RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 BCL6BQ8N143 479 aaPredicted RBP6.25□□□□□ -1.41
VPS4A-203ENST00000564399 KDM8Q8N371 416 aa6.25□□□□□ -1.41
VPS4A-203ENST00000564399 CADM2Q8N3J6 435 aa6.25□□□□□ -1.41
VPS4A-203ENST00000564399 SYT14Q8NB59 555 aa6.25□□□□□ -1.41
VPS4A-203ENST00000564399 ANKK1Q8NFD2 765 aa6.25□□□□□ -1.41
VPS4A-203ENST00000564399 OR4A15Q8NGL6 344 aa6.25□□□□□ -1.41
VPS4A-203ENST00000564399 ACMSDQ8TDX5 336 aa6.25□□□□□ -1.41
VPS4A-203ENST00000564399 SNX33Q8WV41 574 aa6.25□□□□□ -1.41
VPS4A-203ENST00000564399 TWIST2Q8WVJ9 160 aa6.25□□□□□ -1.41
VPS4A-203ENST00000564399 IFT81Q8WYA0 676 aa6.25□□□□□ -1.41
VPS4A-203ENST00000564399 RAB1CQ92928 201 aa6.25□□□□□ -1.41
VPS4A-203ENST00000564399 UBE2FQ969M7 185 aa6.25□□□□□ -1.41
VPS4A-203ENST00000564399 SLC25A36Q96CQ1 311 aa6.25□□□□□ -1.41
VPS4A-203ENST00000564399 ZNF837Q96EG3 531 aaPredicted RBP6.25□□□□□ -1.41
VPS4A-203ENST00000564399 FMO2Q99518 471 aa6.25□□□□□ -1.41
VPS4A-203ENST00000564399 GAL3ST1Q99999 423 aa6.25□□□□□ -1.41
VPS4A-203ENST00000564399 KCNF1Q9H3M0 494 aa6.25□□□□□ -1.41
VPS4A-203ENST00000564399 HINT3Q9NQE9 182 aaKnown RBP6.25□□□□□ -1.41
VPS4A-203ENST00000564399 UBAP1Q9NZ09 502 aa6.25□□□□□ -1.41
VPS4A-203ENST00000564399 PDP1Q9P0J1 537 aaPredicted RBP6.25□□□□□ -1.41
VPS4A-203ENST00000564399 TAAR3PQ9P1P4 343 aa6.25□□□□□ -1.41
VPS4A-203ENST00000564399 NUP50Q9UKX7 468 aa6.25□□□□□ -1.41
VPS4A-203ENST00000564399 EMCNQ9ULC0 261 aa6.25□□□□□ -1.41
VPS4A-203ENST00000564399 WIPI2Q9Y4P8 454 aa6.25□□□□□ -1.41
VPS4A-203ENST00000564399 DNAJC15Q9Y5T4 150 aa6.25□□□□□ -1.41
VPS4A-203ENST00000564399 PRKDCP78527 4128 aaKnown RBP6.25□□□□□ -1.41
VPS4A-203ENST00000564399 IGHV1-69-2A0A0G2JMI3 117 aa6.24□□□□□ -1.41
VPS4A-203ENST00000564399 ISPDA4D126 451 aa6.24□□□□□ -1.41
VPS4A-203ENST00000564399 C17orf100A8MU93 164 aa6.24□□□□□ -1.41
VPS4A-203ENST00000564399 ZNF99A8MXY4 864 aaPredicted RBP6.24□□□□□ -1.41
VPS4A-203ENST00000564399 TMEM233B4DJY2 109 aa6.24□□□□□ -1.41
VPS4A-203ENST00000564399 M0QZ24 198 aa6.24□□□□□ -1.41
VPS4A-203ENST00000564399 M0R3G1 203 aa6.24□□□□□ -1.41
VPS4A-203ENST00000564399 FAAHO00519 579 aa6.24□□□□□ -1.41
VPS4A-203ENST00000564399 FRS3O43559 492 aa6.24□□□□□ -1.41
VPS4A-203ENST00000564399 AKAP8O43823 692 aaKnown RBP6.24□□□□□ -1.41
VPS4A-203ENST00000564399 GLRA3O75311 464 aa6.24□□□□□ -1.41
VPS4A-203ENST00000564399 AHSA1O95433 338 aa6.24□□□□□ -1.41
VPS4A-203ENST00000564399 CPSF4O95639 269 aaKnown RBP6.24□□□□□ -1.41
VPS4A-203ENST00000564399 RAB36O95755 333 aa6.24□□□□□ -1.41
VPS4A-203ENST00000564399 PROCP04070 461 aa6.24□□□□□ -1.41
VPS4A-203ENST00000564399 GUSBP08236 651 aa6.24□□□□□ -1.41
VPS4A-203ENST00000564399 CPA3P15088 417 aa6.24□□□□□ -1.41
VPS4A-203ENST00000564399 IL7RP16871 459 aa6.24□□□□□ -1.41
VPS4A-203ENST00000564399 GCAP28676 217 aa6.24□□□□□ -1.41
VPS4A-203ENST00000564399 GTF2E2P29084 291 aaKnown RBP6.24□□□□□ -1.41
VPS4A-203ENST00000564399 CRYBB2P43320 205 aa6.24□□□□□ -1.41
VPS4A-203ENST00000564399 PTDSS1P48651 473 aaKnown RBP6.24□□□□□ -1.41
VPS4A-203ENST00000564399 ATP4BP51164 291 aa6.24□□□□□ -1.41
VPS4A-203ENST00000564399 COPZ1P61923 177 aa6.24□□□□□ -1.41
VPS4A-203ENST00000564399 FUT5Q11128 374 aa6.24□□□□□ -1.41
VPS4A-203ENST00000564399 EPS8Q12929 822 aa6.24□□□□□ -1.41
VPS4A-203ENST00000564399 GNA13Q14344 377 aa6.24□□□□□ -1.41
VPS4A-203ENST00000564399 GSTA3Q16772 222 aa6.24□□□□□ -1.41
VPS4A-203ENST00000564399 HFEQ30201 348 aa6.24□□□□□ -1.41
VPS4A-203ENST00000564399 CCDC153Q494R4 210 aa6.24□□□□□ -1.41
VPS4A-203ENST00000564399 MMEL1Q495T6 779 aa6.24□□□□□ -1.41
VPS4A-203ENST00000564399 C1orf140Q5VVS0 124 aa6.24□□□□□ -1.41
VPS4A-203ENST00000564399 IL23RQ5VWK5 629 aa6.24□□□□□ -1.41
VPS4A-203ENST00000564399 AP1ARQ63HQ0 302 aa6.24□□□□□ -1.41
VPS4A-203ENST00000564399 KANK2Q63ZY3 851 aa6.24□□□□□ -1.41
VPS4A-203ENST00000564399 OR4F3Q6IEY1 312 aa6.24□□□□□ -1.41
VPS4A-203ENST00000564399 RGS7BPQ6MZT1 257 aaPredicted RBP6.24□□□□□ -1.41
VPS4A-203ENST00000564399 ZNF813Q6ZN06 617 aa6.24□□□□□ -1.41
VPS4A-203ENST00000564399 RNF165Q6ZSG1 346 aa6.24□□□□□ -1.41
VPS4A-203ENST00000564399 ZCCHC23Q6ZST2 131 aa6.24□□□□□ -1.41
VPS4A-203ENST00000564399 SPATC1Q76KD6 591 aa6.24□□□□□ -1.41
VPS4A-203ENST00000564399 HOMEZQ8IX15 550 aa6.24□□□□□ -1.41
VPS4A-203ENST00000564399 CMIPQ8IY22 773 aa6.24□□□□□ -1.41
VPS4A-203ENST00000564399 FNDC5Q8NAU1 212 aa6.24□□□□□ -1.41
VPS4A-203ENST00000564399 GLB1L3Q8NCI6 653 aaPredicted RBP6.24□□□□□ -1.41
VPS4A-203ENST00000564399 PIK3C3Q8NEB9 887 aa6.24□□□□□ -1.41
VPS4A-203ENST00000564399 MIPOL1Q8TD10 442 aa6.24□□□□□ -1.41
VPS4A-203ENST00000564399 ST7LQ8TDW4 575 aa6.24□□□□□ -1.41
VPS4A-203ENST00000564399 POP5Q969H6 163 aaKnown RBP6.24□□□□□ -1.41
VPS4A-203ENST00000564399 TMIGD2Q96BF3 282 aa6.24□□□□□ -1.41
VPS4A-203ENST00000564399 C1orf147Q96MC9 270 aaPredicted RBP6.24□□□□□ -1.41
VPS4A-203ENST00000564399 DPY30Q9C005 99 aa6.24□□□□□ -1.41
VPS4A-203ENST00000564399 MS4A7Q9GZW8 240 aaPredicted RBP6.24□□□□□ -1.41
VPS4A-203ENST00000564399 MMP27Q9H306 513 aa6.24□□□□□ -1.41
VPS4A-203ENST00000564399 DECR2Q9NUI1 292 aa6.24□□□□□ -1.41
VPS4A-203ENST00000564399 B3GNT2Q9NY97 397 aa6.24□□□□□ -1.41
VPS4A-203ENST00000564399 PLEK2Q9NYT0 353 aa6.24□□□□□ -1.41
VPS4A-203ENST00000564399 TESQ9UGI8 421 aaKnown RBP6.24□□□□□ -1.41
VPS4A-203ENST00000564399 TBK1Q9UHD2 729 aa6.24□□□□□ -1.41
VPS4A-203ENST00000564399 MID2Q9UJV3 735 aa6.24□□□□□ -1.41
VPS4A-203ENST00000564399 RCE1Q9Y256 329 aa6.24□□□□□ -1.41
VPS4A-203ENST00000564399 AUP1Q9Y679 476 aa6.24□□□□□ -1.41
VPS4A-203ENST00000564399 A0A1B0GUS0 222 aa6.23□□□□□ -1.41
VPS4A-203ENST00000564399 A0A1W2PPM1 405 aa6.23□□□□□ -1.41
VPS4A-203ENST00000564399 AGAP5A6NIR3 686 aa6.23□□□□□ -1.41
VPS4A-203ENST00000564399 PLIN3O60664 434 aa6.23□□□□□ -1.41
VPS4A-203ENST00000564399 GPANK1O95872 356 aa6.23□□□□□ -1.41
VPS4A-203ENST00000564399 CLPTM1O96005 669 aa6.23□□□□□ -1.41
VPS4A-203ENST00000564399 TFPTP0C1Z6 253 aa6.23□□□□□ -1.41
VPS4A-203ENST00000564399 GKN3PP0CG01 181 aa6.23□□□□□ -1.41
VPS4A-203ENST00000564399 PNMTP11086 282 aa6.23□□□□□ -1.41
VPS4A-203ENST00000564399 ZNF14P17017 642 aaPredicted RBP6.23□□□□□ -1.41
VPS4A-203ENST00000564399 NCF2P19878 526 aaPredicted RBP6.23□□□□□ -1.41
VPS4A-203ENST00000564399 UQCRC2P22695 453 aa6.23□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms