RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 ZNF432O94892 652 aa14.73□□□□□ -0.05
CLK3-210ENST00000563112 OPN1SWP03999 348 aa14.73□□□□□ -0.05
CLK3-210ENST00000563112 BMP4P12644 408 aa14.73□□□□□ -0.05
CLK3-210ENST00000563112 PCGF2P35227 344 aa14.73□□□□□ -0.05
CLK3-210ENST00000563112 CDH12P55289 794 aa14.73□□□□□ -0.05
CLK3-210ENST00000563112 ROR2Q01974 943 aaKnown RBP14.73□□□□□ -0.05
CLK3-210ENST00000563112 LGALS3BPQ08380 585 aa14.73□□□□□ -0.05
CLK3-210ENST00000563112 TNK1Q13470 666 aa14.73□□□□□ -0.05
CLK3-210ENST00000563112 MAPRE2Q15555 327 aa14.73□□□□□ -0.05
CLK3-210ENST00000563112 DUSP7Q16829 419 aa14.73□□□□□ -0.05
CLK3-210ENST00000563112 TRMT5Q32P41 509 aaKnown RBP14.73□□□□□ -0.05
CLK3-210ENST00000563112 ANKRD16Q6P6B7 361 aa14.73□□□□□ -0.05
CLK3-210ENST00000563112 ZNF613Q6PF04 617 aa14.73□□□□□ -0.05
CLK3-210ENST00000563112 SCAIQ8N9R8 606 aa14.73□□□□□ -0.05
CLK3-210ENST00000563112 PIK3C3Q8NEB9 887 aa14.73□□□□□ -0.05
CLK3-210ENST00000563112 RASSF5Q8WWW0 418 aa14.73□□□□□ -0.05
CLK3-210ENST00000563112 BCL2L2Q92843 193 aaPredicted RBP14.73□□□□□ -0.05
CLK3-210ENST00000563112 ARHGDIGQ99819 225 aa14.73□□□□□ -0.05
CLK3-210ENST00000563112 TMEM43Q9BTV4 400 aa14.73□□□□□ -0.05
CLK3-210ENST00000563112 FGFR1OP2Q9NVK5 253 aa14.73□□□□□ -0.05
CLK3-210ENST00000563112 B3GAT1Q9P2W7 334 aa14.73□□□□□ -0.05
CLK3-210ENST00000563112 RPL36A-HNRNPH2H7BZ11 118 aa14.72□□□□□ -0.05
CLK3-210ENST00000563112 IGHV4-39P01824 125 aa14.72□□□□□ -0.05
CLK3-210ENST00000563112 CHRNB3Q05901 458 aa14.72□□□□□ -0.05
CLK3-210ENST00000563112 PMS2P3Q13401 168 aa14.72□□□□□ -0.05
CLK3-210ENST00000563112 VMACQ2NL98 169 aa14.72□□□□□ -0.05
CLK3-210ENST00000563112 HSP90B2PQ58FF3 399 aa14.72□□□□□ -0.05
CLK3-210ENST00000563112 COQ5Q5HYK3 327 aa14.72□□□□□ -0.05
CLK3-210ENST00000563112 NANOGP8Q6NSW7 305 aa14.72□□□□□ -0.05
CLK3-210ENST00000563112 B3GLCTQ6Y288 498 aa14.72□□□□□ -0.05
CLK3-210ENST00000563112 MAGEE2Q8TD90 523 aaPredicted RBP14.72□□□□□ -0.05
CLK3-210ENST00000563112 SLC41A3Q96GZ6 507 aa14.72□□□□□ -0.05
CLK3-210ENST00000563112 SLC38A2Q96QD8 506 aa14.72□□□□□ -0.05
CLK3-210ENST00000563112 ECSITQ9BQ95 431 aa14.72□□□□□ -0.05
CLK3-210ENST00000563112 WFDC6Q9BQY6 131 aa14.72□□□□□ -0.05
CLK3-210ENST00000563112 CACNG6Q9BXT2 260 aa14.72□□□□□ -0.05
CLK3-210ENST00000563112 NANOGQ9H9S0 305 aa14.72□□□□□ -0.05
CLK3-210ENST00000563112 NOX1Q9Y5S8 564 aa14.72□□□□□ -0.05
CLK3-210ENST00000563112 A0A096LPE4 126 aa14.71□□□□□ -0.05
CLK3-210ENST00000563112 ARPC4-TTLL3A0A0A6YYG9 625 aa14.71□□□□□ -0.05
CLK3-210ENST00000563112 A0A1W2PPZ6 126 aa14.71□□□□□ -0.05
CLK3-210ENST00000563112 CPSF4LA6NMK7 179 aaKnown RBP14.71□□□□□ -0.05
CLK3-210ENST00000563112 BBIP1A8MTZ0 92 aa14.71□□□□□ -0.05
CLK3-210ENST00000563112 RNF223E7ERA6 249 aa14.71□□□□□ -0.05
CLK3-210ENST00000563112 ATP6V1G2-DDX39BF2Z307 99 aa14.71□□□□□ -0.05
CLK3-210ENST00000563112 MS4A18H0YCH9 400 aa14.71□□□□□ -0.05
CLK3-210ENST00000563112 FBP2O00757 339 aa14.71□□□□□ -0.05
CLK3-210ENST00000563112 CHP2O43745 196 aa14.71□□□□□ -0.05
CLK3-210ENST00000563112 MT-ATP6P00846 226 aa14.71□□□□□ -0.05
CLK3-210ENST00000563112 NPPAP01160 153 aa14.71□□□□□ -0.05
CLK3-210ENST00000563112 CRYAAP02489 173 aa14.71□□□□□ -0.05
CLK3-210ENST00000563112 BGLAPP02818 100 aa14.71□□□□□ -0.05
CLK3-210ENST00000563112 APOBEC3AP31941 199 aaPredicted RBP14.71□□□□□ -0.05
CLK3-210ENST00000563112 ACVR1BP36896 505 aa14.71□□□□□ -0.05
CLK3-210ENST00000563112 ARF1P84077 181 aaKnown RBP14.71□□□□□ -0.05
CLK3-210ENST00000563112 KLF10Q13118 480 aa14.71□□□□□ -0.05
CLK3-210ENST00000563112 RAB35Q15286 201 aa14.71□□□□□ -0.05
CLK3-210ENST00000563112 MS4A18Q3C1V0 323 aa14.71□□□□□ -0.05
CLK3-210ENST00000563112 ENTPD8Q5MY95 495 aa14.71□□□□□ -0.05
CLK3-210ENST00000563112 LINGO2Q7L985 606 aa14.71□□□□□ -0.05
CLK3-210ENST00000563112 GPR32P1Q8NGA4 272 aa14.71□□□□□ -0.05
CLK3-210ENST00000563112 OR6T1Q8NGN1 323 aa14.71□□□□□ -0.05
CLK3-210ENST00000563112 VANGL1Q8TAA9 524 aaPredicted RBP14.71□□□□□ -0.05
CLK3-210ENST00000563112 LRRC58Q96CX6 371 aa14.71□□□□□ -0.05
CLK3-210ENST00000563112 REG4Q9BYZ8 158 aa14.71□□□□□ -0.05
CLK3-210ENST00000563112 GPR35Q9HC97 309 aa14.71□□□□□ -0.05
CLK3-210ENST00000563112 B3GAT2Q9NPZ5 323 aa14.71□□□□□ -0.05
CLK3-210ENST00000563112 MRPL39Q9NYK5 338 aaKnown RBP14.71□□□□□ -0.05
CLK3-210ENST00000563112 GDF2Q9UK05 429 aaPredicted RBP14.71□□□□□ -0.05
CLK3-210ENST00000563112 MOKQ9UQ07 419 aa14.71□□□□□ -0.05
CLK3-210ENST00000563112 PMF1-BGLAPU3KQ54 211 aa14.71□□□□□ -0.05
CLK3-210ENST00000563112 ALPK2Q86TB3 2170 aa14.7□□□□□ -0.06
CLK3-210ENST00000563112 ZNF726A6NNF4 738 aa14.7□□□□□ -0.06
CLK3-210ENST00000563112 MRASO14807 208 aa14.7□□□□□ -0.06
CLK3-210ENST00000563112 TRAF3IP2O43734 574 aaPredicted RBP14.7□□□□□ -0.06
CLK3-210ENST00000563112 SSX4O60224 188 aa14.7□□□□□ -0.06
CLK3-210ENST00000563112 NDUFS7O75251 213 aa14.7□□□□□ -0.06
CLK3-210ENST00000563112 OR6A2O95222 327 aa14.7□□□□□ -0.06
CLK3-210ENST00000563112 CD247P20963 164 aa14.7□□□□□ -0.06
CLK3-210ENST00000563112 AHCYP23526 432 aa14.7□□□□□ -0.06
CLK3-210ENST00000563112 NUDT6P53370 316 aa14.7□□□□□ -0.06
CLK3-210ENST00000563112 PPP2R2BQ00005 443 aa14.7□□□□□ -0.06
CLK3-210ENST00000563112 POU3F1Q03052 451 aaPredicted RBP14.7□□□□□ -0.06
CLK3-210ENST00000563112 PUDPQ08623 228 aa14.7□□□□□ -0.06
CLK3-210ENST00000563112 SF3A3Q12874 501 aaKnown RBP eCLIP14.7□□□□□ -0.062e-6■■□□□ 13.3
CLK3-210ENST00000563112 CEACAM16Q2WEN9 425 aa14.7□□□□□ -0.06
CLK3-210ENST00000563112 C11orf71Q6IPW1 123 aa14.7□□□□□ -0.06
CLK3-210ENST00000563112 TTC33Q6PID6 262 aaPredicted RBP14.7□□□□□ -0.06
CLK3-210ENST00000563112 LINC00114Q6XXX2 140 aa14.7□□□□□ -0.06
CLK3-210ENST00000563112 CCDC80Q76M96 950 aa14.7□□□□□ -0.06
CLK3-210ENST00000563112 CCDC36Q8IYA8 594 aa14.7□□□□□ -0.06
CLK3-210ENST00000563112 PCYOX1LQ8NBM8 494 aa14.7□□□□□ -0.06
CLK3-210ENST00000563112 OR8J3Q8NGG0 315 aa14.7□□□□□ -0.06
CLK3-210ENST00000563112 PROX1Q92786 737 aa14.7□□□□□ -0.06
CLK3-210ENST00000563112 TAMM41Q96BW9 452 aa14.7□□□□□ -0.06
CLK3-210ENST00000563112 OR2M2Q96R28 347 aa14.7□□□□□ -0.06
CLK3-210ENST00000563112 RHNO1Q9BSD3 238 aa14.7□□□□□ -0.06
CLK3-210ENST00000563112 CRLF2Q9HC73 371 aa14.7□□□□□ -0.06
CLK3-210ENST00000563112 SAR1AQ9NR31 198 aa14.7□□□□□ -0.06
CLK3-210ENST00000563112 GID8Q9NWU2 228 aa14.7□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms