RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 NOX3Q9HBY0 568 aa14.17□□□□□ -0.14
CLN3-208ENST00000561505 ZNF232Q9UNY5 417 aa14.17□□□□□ -0.14
CLN3-208ENST00000561505 ZNF99A8MXY4 864 aaPredicted RBP14.16□□□□□ -0.14
CLN3-208ENST00000561505 RFXANKO14593 260 aa14.16□□□□□ -0.14
CLN3-208ENST00000561505 OR2T1O43869 369 aa14.16□□□□□ -0.14
CLN3-208ENST00000561505 SLC43A1O75387 559 aa14.16□□□□□ -0.14
CLN3-208ENST00000561505 ERCC1P07992 297 aaPredicted RBP14.16□□□□□ -0.14
CLN3-208ENST00000561505 ZNF35P13682 527 aa14.16□□□□□ -0.14
CLN3-208ENST00000561505 PCMT1P22061 227 aa14.16□□□□□ -0.14
CLN3-208ENST00000561505 COMPP49747 757 aaPredicted RBP14.16□□□□□ -0.14
CLN3-208ENST00000561505 DSTNP60981 165 aa14.16□□□□□ -0.14
CLN3-208ENST00000561505 BST1Q10588 318 aa14.16□□□□□ -0.14
CLN3-208ENST00000561505 STX3Q13277 289 aa14.16□□□□□ -0.14
CLN3-208ENST00000561505 TRIP10Q15642 601 aa14.16□□□□□ -0.14
CLN3-208ENST00000561505 ADRM1Q16186 407 aa14.16□□□□□ -0.14
CLN3-208ENST00000561505 CEACAM16Q2WEN9 425 aa14.16□□□□□ -0.14
CLN3-208ENST00000561505 SLC9B1Q4ZJI4 515 aa14.16□□□□□ -0.14
CLN3-208ENST00000561505 PDCD4Q53EL6 469 aaKnown RBP14.16□□□□□ -0.14
CLN3-208ENST00000561505 FAM69AQ5T7M9 428 aa14.16□□□□□ -0.14
CLN3-208ENST00000561505 CDK20Q8IZL9 346 aa14.16□□□□□ -0.14
CLN3-208ENST00000561505 PIK3C3Q8NEB9 887 aa14.16□□□□□ -0.14
CLN3-208ENST00000561505 SEMA6DQ8NFY4 1073 aa14.16□□□□□ -0.14
CLN3-208ENST00000561505 CKAP2Q8WWK9 683 aa14.16□□□□□ -0.14
CLN3-208ENST00000561505 MRPL24Q96A35 216 aaKnown RBP14.16□□□□□ -0.14
CLN3-208ENST00000561505 TMEM19Q96HH6 336 aa14.16□□□□□ -0.14
CLN3-208ENST00000561505 MAELQ96JY0 434 aaKnown RBP14.16□□□□□ -0.14
CLN3-208ENST00000561505 OR2M2Q96R28 347 aa14.16□□□□□ -0.14
CLN3-208ENST00000561505 DENND2DQ9H6A0 471 aaPredicted RBP14.16□□□□□ -0.14
CLN3-208ENST00000561505 ARMC7Q9H6L4 198 aa14.16□□□□□ -0.14
CLN3-208ENST00000561505 CRLF2Q9HC73 371 aa14.16□□□□□ -0.14
CLN3-208ENST00000561505 SEC14L4Q9UDX3 406 aa14.16□□□□□ -0.14
CLN3-208ENST00000561505 USP22Q9UPT9 525 aa14.16□□□□□ -0.14
CLN3-208ENST00000561505 IGKV1D-42A0A075B6H8 117 aa14.15□□□□□ -0.14
CLN3-208ENST00000561505 B4DSR2 109 aa14.15□□□□□ -0.14
CLN3-208ENST00000561505 SYNGR3O43761 229 aa14.15□□□□□ -0.14
CLN3-208ENST00000561505 BCHEP06276 602 aa14.15□□□□□ -0.14
CLN3-208ENST00000561505 ZNF14P17017 642 aaPredicted RBP14.15□□□□□ -0.14
CLN3-208ENST00000561505 HOXB9P17482 250 aaPredicted RBP14.15□□□□□ -0.14
CLN3-208ENST00000561505 BGNP21810 368 aa14.15□□□□□ -0.14
CLN3-208ENST00000561505 RPS5P46782 204 aaKnown RBP14.15□□□□□ -0.14
CLN3-208ENST00000561505 NME5P56597 212 aa14.15□□□□□ -0.14
CLN3-208ENST00000561505 MRPS11P82912 194 aaKnown RBP14.15□□□□□ -0.14
CLN3-208ENST00000561505 DAG1Q14118 895 aa14.15□□□□□ -0.14
CLN3-208ENST00000561505 FXNQ16595 210 aa14.15□□□□□ -0.14
CLN3-208ENST00000561505 ELFN2Q5R3F8 820 aa14.15□□□□□ -0.14
CLN3-208ENST00000561505 WDR93Q6P2C0 686 aa14.15□□□□□ -0.14
CLN3-208ENST00000561505 MDP1Q86V88 176 aa14.15□□□□□ -0.14
CLN3-208ENST00000561505 TAAR8Q969N4 342 aa14.15□□□□□ -0.14
CLN3-208ENST00000561505 SNX18Q96RF0 628 aa14.15□□□□□ -0.14
CLN3-208ENST00000561505 MS4A5Q9H3V2 200 aa14.15□□□□□ -0.14
CLN3-208ENST00000561505 ZNF224Q9NZL3 707 aa14.15□□□□□ -0.14
CLN3-208ENST00000561505 CMAHPQ9Y471 501 aa14.15□□□□□ -0.14
CLN3-208ENST00000561505 MS4A18H0YCH9 400 aa14.14□□□□□ -0.15
CLN3-208ENST00000561505 AIM2O14862 343 aa14.14□□□□□ -0.15
CLN3-208ENST00000561505 HDAC3O15379 428 aa14.14□□□□□ -0.15
CLN3-208ENST00000561505 SNNO75324 88 aaPredicted RBP14.14□□□□□ -0.15
CLN3-208ENST00000561505 VENTXO95231 258 aa14.14□□□□□ -0.15
CLN3-208ENST00000561505 ADRA2AP08913 450 aa14.14□□□□□ -0.15
CLN3-208ENST00000561505 IFNGR1P15260 489 aa14.14□□□□□ -0.15
CLN3-208ENST00000561505 NCF2P19878 526 aaPredicted RBP14.14□□□□□ -0.15
CLN3-208ENST00000561505 CFPP27918 469 aa14.14□□□□□ -0.15
CLN3-208ENST00000561505 GLRXP35754 106 aa14.14□□□□□ -0.15
CLN3-208ENST00000561505 MS4A18Q3C1V0 323 aa14.14□□□□□ -0.15
CLN3-208ENST00000561505 RPS26P11Q5JNZ5 115 aaPredicted RBP14.14□□□□□ -0.15
CLN3-208ENST00000561505 PHYHD1Q5SRE7 291 aa14.14□□□□□ -0.15
CLN3-208ENST00000561505 H1FNTQ75WM6 255 aaPredicted RBP14.14□□□□□ -0.15
CLN3-208ENST00000561505 C20orf196Q8IYI0 205 aa14.14□□□□□ -0.15
CLN3-208ENST00000561505 GPR137CQ8N3F9 429 aa14.14□□□□□ -0.15
CLN3-208ENST00000561505 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP14.14□□□□□ -0.15
CLN3-208ENST00000561505 VPS33AQ96AX1 596 aa14.14□□□□□ -0.15
CLN3-208ENST00000561505 SLC25A36Q96CQ1 311 aa14.14□□□□□ -0.15
CLN3-208ENST00000561505 MRPL37Q9BZE1 423 aaKnown RBP14.14□□□□□ -0.15
CLN3-208ENST00000561505 WDR55Q9H6Y2 383 aaPredicted RBP14.14□□□□□ -0.15
CLN3-208ENST00000561505 A4GALTQ9NPC4 353 aa14.14□□□□□ -0.15
CLN3-208ENST00000561505 SDR39U1Q9NRG7 319 aaPredicted RBP14.14□□□□□ -0.15
CLN3-208ENST00000561505 SPEF1Q9Y4P9 236 aa14.14□□□□□ -0.15
CLN3-208ENST00000561505 GMEB1Q9Y692 573 aa14.14□□□□□ -0.15
CLN3-208ENST00000561505 LYNX1G3V0Z9 82 aa14.13□□□□□ -0.15
CLN3-208ENST00000561505 M0R082 166 aa14.13□□□□□ -0.15
CLN3-208ENST00000561505 SLC22A3O75751 556 aa14.13□□□□□ -0.15
CLN3-208ENST00000561505 LYNX1P0DP58 116 aa14.13□□□□□ -0.15
CLN3-208ENST00000561505 IDO1P14902 403 aa14.13□□□□□ -0.15
CLN3-208ENST00000561505 ETS2P15036 469 aa14.13□□□□□ -0.15
CLN3-208ENST00000561505 EPHA3P29320 983 aa14.13□□□□□ -0.15
CLN3-208ENST00000561505 GRPRP30550 384 aa14.13□□□□□ -0.15
CLN3-208ENST00000561505 SRP14P37108 136 aaKnown RBP14.13□□□□□ -0.15
CLN3-208ENST00000561505 CRATP43155 626 aa14.13□□□□□ -0.15
CLN3-208ENST00000561505 RUNX1T1Q06455 604 aa14.13□□□□□ -0.15
CLN3-208ENST00000561505 SNTB2Q13425 540 aaKnown RBP14.13□□□□□ -0.15
CLN3-208ENST00000561505 GTDC1Q4AE62 458 aa14.13□□□□□ -0.15
CLN3-208ENST00000561505 ZNF311Q5JNZ3 666 aa14.13□□□□□ -0.15
CLN3-208ENST00000561505 ZNF417Q8TAU3 575 aa14.13□□□□□ -0.15
CLN3-208ENST00000561505 SLC38A4Q969I6 547 aa14.13□□□□□ -0.15
CLN3-208ENST00000561505 ZNF587Q96SQ5 575 aaPredicted RBP14.13□□□□□ -0.15
CLN3-208ENST00000561505 ZBTB18Q99592 522 aa14.13□□□□□ -0.15
CLN3-208ENST00000561505 ZIM2Q9NZV7 527 aa14.13□□□□□ -0.15
CLN3-208ENST00000561505 METRNQ9UJH8 293 aa14.13□□□□□ -0.15
CLN3-208ENST00000561505 TRPC5OSA6NMA1 111 aa14.12□□□□□ -0.15
CLN3-208ENST00000561505 HPRP00739 348 aa14.12□□□□□ -0.15
CLN3-208ENST00000561505 ACHEP22303 614 aa14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 120.1 ms