RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 KLHL17Q6TDP4 642 aa7.71□□□□□ -1.18
USP3-208ENST00000558285 C16orf89Q6UX73 402 aa7.71□□□□□ -1.18
USP3-208ENST00000558285 C20orf204Q6ZNR8 217 aa7.71□□□□□ -1.18
USP3-208ENST00000558285 AMIGO2Q86SJ2 522 aa7.71□□□□□ -1.18
USP3-208ENST00000558285 CLVS1Q8IUQ0 354 aaPredicted RBP7.71□□□□□ -1.18
USP3-208ENST00000558285 TUSC5Q8IXB3 177 aa7.71□□□□□ -1.18
USP3-208ENST00000558285 PACRGLQ8N7B6 248 aa7.71□□□□□ -1.18
USP3-208ENST00000558285 LSMEM1Q8N8F7 131 aa7.71□□□□□ -1.18
USP3-208ENST00000558285 POMGNT2Q8NAT1 580 aa7.71□□□□□ -1.18
USP3-208ENST00000558285 SUN5Q8TC36 379 aa7.71□□□□□ -1.18
USP3-208ENST00000558285 MAL2Q969L2 176 aa7.71□□□□□ -1.18
USP3-208ENST00000558285 PIGTQ969N2 578 aa7.71□□□□□ -1.18
USP3-208ENST00000558285 ZG16BQ96DA0 208 aa7.71□□□□□ -1.18
USP3-208ENST00000558285 ZNF347Q96SE7 839 aa7.71□□□□□ -1.18
USP3-208ENST00000558285 CPPED1Q9BRF8 314 aaPredicted RBP7.71□□□□□ -1.18
USP3-208ENST00000558285 SRXN1Q9BYN0 137 aa7.71□□□□□ -1.18
USP3-208ENST00000558285 ANKRD60Q9BZ19 345 aa7.71□□□□□ -1.18
USP3-208ENST00000558285 POLR2J2Q9GZM3 115 aaKnown RBP7.71□□□□□ -1.18
USP3-208ENST00000558285 ACTR6Q9GZN1 396 aa7.71□□□□□ -1.18
USP3-208ENST00000558285 ADAM19Q9H013 955 aa7.71□□□□□ -1.18
USP3-208ENST00000558285 POLR2J3Q9H1A7 115 aaKnown RBP7.71□□□□□ -1.18
USP3-208ENST00000558285 EFCAB1Q9HAE3 211 aa7.71□□□□□ -1.18
USP3-208ENST00000558285 SRA1Q9HD15 236 aaKnown RBP7.71□□□□□ -1.18
USP3-208ENST00000558285 DIABLOQ9NR28 239 aa7.71□□□□□ -1.18
USP3-208ENST00000558285 SLC6A13Q9NSD5 602 aa7.71□□□□□ -1.18
USP3-208ENST00000558285 ASB6Q9NWX5 421 aa7.71□□□□□ -1.18
USP3-208ENST00000558285 SLC25A37Q9NYZ2 338 aa7.71□□□□□ -1.18
USP3-208ENST00000558285 ARMCX1Q9P291 453 aa7.71□□□□□ -1.18
USP3-208ENST00000558285 CORINQ9Y5Q5 1042 aa7.71□□□□□ -1.18
USP3-208ENST00000558285 PKDREJQ9NTG1 2253 aa7.71□□□□□ -1.18
USP3-208ENST00000558285 INTS1Q8N201 2190 aaKnown RBP7.71□□□□□ -1.18
USP3-208ENST00000558285 FREM3P0C091 2139 aa7.71□□□□□ -1.18
USP3-208ENST00000558285 MAST4O15021 2626 aa7.7□□□□□ -1.18
USP3-208ENST00000558285 ANKHD1Q8IWZ3 2542 aaKnown RBP7.7□□□□□ -1.18
USP3-208ENST00000558285 TRBV5-3A0A0A0MS03 114 aa7.7□□□□□ -1.18
USP3-208ENST00000558285 CENPVL1A0A0U1RR11 272 aa7.7□□□□□ -1.18
USP3-208ENST00000558285 CIB4A0PJX0 185 aa7.7□□□□□ -1.18
USP3-208ENST00000558285 AIM2O14862 343 aa7.7□□□□□ -1.18
USP3-208ENST00000558285 SMAD9O15198 467 aaKnown RBP7.7□□□□□ -1.18
USP3-208ENST00000558285 ARHGEF9O43307 516 aa7.7□□□□□ -1.18
USP3-208ENST00000558285 GKN3PP0CG01 181 aa7.7□□□□□ -1.18
USP3-208ENST00000558285 ATF4P18848 351 aaPredicted RBP7.7□□□□□ -1.18
USP3-208ENST00000558285 MMP16P51512 607 aa7.7□□□□□ -1.18
USP3-208ENST00000558285 TMBIM6P55061 237 aa7.7□□□□□ -1.18
USP3-208ENST00000558285 KLF10Q13118 480 aa7.7□□□□□ -1.18
USP3-208ENST00000558285 C1DQ13901 141 aaKnown RBP7.7□□□□□ -1.18
USP3-208ENST00000558285 VEZF1Q14119 521 aa7.7□□□□□ -1.18
USP3-208ENST00000558285 OTUD3Q5T2D3 398 aaPredicted RBP7.7□□□□□ -1.18
USP3-208ENST00000558285 SFRP5Q5T4F7 317 aa7.7□□□□□ -1.18
USP3-208ENST00000558285 C1orf140Q5VVS0 124 aa7.7□□□□□ -1.18
USP3-208ENST00000558285 FBXW9Q5XUX1 488 aa7.7□□□□□ -1.18
USP3-208ENST00000558285 ABLIM2Q6H8Q1 611 aa7.7□□□□□ -1.18
USP3-208ENST00000558285 ZNF474Q6S9Z5 364 aaPredicted RBP7.7□□□□□ -1.18
USP3-208ENST00000558285 CASP12Q6UXS9 341 aa7.7□□□□□ -1.18
USP3-208ENST00000558285 DLEU7Q6UYE1 221 aa7.7□□□□□ -1.18
USP3-208ENST00000558285 TFAP2EQ6VUC0 442 aa7.7□□□□□ -1.18
USP3-208ENST00000558285 VASH1Q7L8A9 365 aaPredicted RBP7.7□□□□□ -1.18
USP3-208ENST00000558285 OLIG3Q7RTU3 272 aa7.7□□□□□ -1.18
USP3-208ENST00000558285 HMGN2P46Q86SG4 172 aa7.7□□□□□ -1.18
USP3-208ENST00000558285 CDC20BQ86Y33 519 aa7.7□□□□□ -1.18
USP3-208ENST00000558285 SLC7A5P1Q8MH63 180 aa7.7□□□□□ -1.18
USP3-208ENST00000558285 POU5F2Q8N7G0 328 aa7.7□□□□□ -1.18
USP3-208ENST00000558285 OR6S1Q8NH40 331 aa7.7□□□□□ -1.18
USP3-208ENST00000558285 MFSD8Q8NHS3 518 aa7.7□□□□□ -1.18
USP3-208ENST00000558285 TRIM63Q969Q1 353 aa7.7□□□□□ -1.18
USP3-208ENST00000558285 LRRC58Q96CX6 371 aa7.7□□□□□ -1.18
USP3-208ENST00000558285 RADILQ96JH8 1075 aa7.7□□□□□ -1.18
USP3-208ENST00000558285 HOPXQ9BPY8 73 aaPredicted RBP7.7□□□□□ -1.18
USP3-208ENST00000558285 ASPNQ9BXN1 380 aa7.7□□□□□ -1.18
USP3-208ENST00000558285 ZNF385DQ9H6B1 395 aa7.7□□□□□ -1.18
USP3-208ENST00000558285 HMG20AQ9NP66 347 aa7.7□□□□□ -1.18
USP3-208ENST00000558285 RLIMQ9NVW2 624 aa7.7□□□□□ -1.18
USP3-208ENST00000558285 IL20Q9NYY1 176 aa7.7□□□□□ -1.18
USP3-208ENST00000558285 B3GALT5Q9Y2C3 310 aa7.7□□□□□ -1.18
USP3-208ENST00000558285 NUP214P35658 2090 aaPredicted RBP7.7□□□□□ -1.18
USP3-208ENST00000558285 TMEM72A0PK05 275 aa7.69□□□□□ -1.18
USP3-208ENST00000558285 CLDN24A6NM45 220 aa7.69□□□□□ -1.18
USP3-208ENST00000558285 GSTA4O15217 222 aa7.69□□□□□ -1.18
USP3-208ENST00000558285 OR6A2O95222 327 aa7.69□□□□□ -1.18
USP3-208ENST00000558285 GGT1P19440 569 aa7.69□□□□□ -1.18
USP3-208ENST00000558285 CD247P20963 164 aa7.69□□□□□ -1.18
USP3-208ENST00000558285 SHC1P29353 583 aa7.69□□□□□ -1.18
USP3-208ENST00000558285 BMXP51813 675 aa7.69□□□□□ -1.18
USP3-208ENST00000558285 MTPNP58546 118 aa7.69□□□□□ -1.18
USP3-208ENST00000558285 IL1RL1Q01638 556 aa7.69□□□□□ -1.18
USP3-208ENST00000558285 CEACAM7Q14002 265 aa7.69□□□□□ -1.18
USP3-208ENST00000558285 OR7A5Q15622 319 aa7.69□□□□□ -1.18
USP3-208ENST00000558285 VMACQ2NL98 169 aa7.69□□□□□ -1.18
USP3-208ENST00000558285 FAM69AQ5T7M9 428 aa7.69□□□□□ -1.18
USP3-208ENST00000558285 ZNF613Q6PF04 617 aa7.69□□□□□ -1.18
USP3-208ENST00000558285 BHLHA15Q7RTS1 189 aaPredicted RBP7.69□□□□□ -1.18
USP3-208ENST00000558285 C17orf78Q8N4C9 275 aa7.69□□□□□ -1.18
USP3-208ENST00000558285 C10orf53Q8N6V4 93 aa7.69□□□□□ -1.18
USP3-208ENST00000558285 PIK3IP1Q96FE7 263 aa7.69□□□□□ -1.18
USP3-208ENST00000558285 TXNDC15Q96J42 360 aa7.69□□□□□ -1.18
USP3-208ENST00000558285 DOCK7Q96N67 2140 aa7.69□□□□□ -1.18
USP3-208ENST00000558285 WFIKKN1Q96NZ8 548 aa7.69□□□□□ -1.18
USP3-208ENST00000558285 BCL7BQ9BQE9 202 aa7.69□□□□□ -1.18
USP3-208ENST00000558285 KAT8Q9H7Z6 458 aaKnown RBP7.69□□□□□ -1.18
USP3-208ENST00000558285 B3GAT2Q9NPZ5 323 aa7.69□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 66 ms