RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 MT-ND4P03905 459 aa6.03□□□□□ -1.44
USP28-202ENST00000535607 CHRM5P08912 532 aaPredicted RBP6.03□□□□□ -1.44
USP28-202ENST00000535607 C1GALT1C1LP0DN25 315 aa6.03□□□□□ -1.44
USP28-202ENST00000535607 ALPPL2P10696 532 aa6.03□□□□□ -1.44
USP28-202ENST00000535607 RPA2P15927 270 aa6.03□□□□□ -1.44
USP28-202ENST00000535607 MMP11P24347 488 aa6.03□□□□□ -1.44
USP28-202ENST00000535607 FPR3P25089 353 aa6.03□□□□□ -1.44
USP28-202ENST00000535607 MAT2AP31153 395 aaKnown RBP6.03□□□□□ -1.44
USP28-202ENST00000535607 RPL35P42766 123 aaKnown RBP6.03□□□□□ -1.44
USP28-202ENST00000535607 VEGFCP49767 419 aa6.03□□□□□ -1.44
USP28-202ENST00000535607 PTTG1IPP53801 180 aa6.03□□□□□ -1.44
USP28-202ENST00000535607 GAS1P54826 345 aa6.03□□□□□ -1.44
USP28-202ENST00000535607 RAB5BP61020 215 aa6.03□□□□□ -1.44
USP28-202ENST00000535607 SSTP61278 116 aa6.03□□□□□ -1.44
USP28-202ENST00000535607 RPS13P62277 151 aaKnown RBP6.03□□□□□ -1.44
USP28-202ENST00000535607 ACTA2P62736 377 aa6.03□□□□□ -1.44
USP28-202ENST00000535607 ACTG2P63267 376 aa6.03□□□□□ -1.44
USP28-202ENST00000535607 KLF9Q13886 244 aaPredicted RBP6.03□□□□□ -1.44
USP28-202ENST00000535607 PUM1Q14671 1186 aaKnown RBP eCLIP6.03□□□□□ -1.44
USP28-202ENST00000535607 MICBQ29980 383 aa6.03□□□□□ -1.44
USP28-202ENST00000535607 METRNLQ641Q3 311 aa6.03□□□□□ -1.44
USP28-202ENST00000535607 OLFML2AQ68BL7 652 aa6.03□□□□□ -1.44
USP28-202ENST00000535607 LRRN1Q6UXK5 716 aa6.03□□□□□ -1.44
USP28-202ENST00000535607 TPRG1Q6ZUI0 275 aa6.03□□□□□ -1.44
USP28-202ENST00000535607 COMMD6Q7Z4G1 85 aa6.03□□□□□ -1.44
USP28-202ENST00000535607 WDR53Q7Z5U6 358 aaPredicted RBP6.03□□□□□ -1.44
USP28-202ENST00000535607 PPP1R32Q7Z5V6 425 aa6.03□□□□□ -1.44
USP28-202ENST00000535607 KLBQ86Z14 1044 aa6.03□□□□□ -1.44
USP28-202ENST00000535607 CDK20Q8IZL9 346 aa6.03□□□□□ -1.44
USP28-202ENST00000535607 SLC43A2Q8N370 569 aa6.03□□□□□ -1.44
USP28-202ENST00000535607 C12orf45Q8N5I9 185 aaPredicted RBP6.03□□□□□ -1.44
USP28-202ENST00000535607 TBC1D19Q8N5T2 526 aa6.03□□□□□ -1.44
USP28-202ENST00000535607 IQCF1Q8N6M8 205 aa6.03□□□□□ -1.44
USP28-202ENST00000535607 HORMAD2Q8N7B1 307 aa6.03□□□□□ -1.44
USP28-202ENST00000535607 DCAF4L2Q8NA75 395 aa6.03□□□□□ -1.44
USP28-202ENST00000535607 ZNF485Q8NCK3 441 aa6.03□□□□□ -1.44
USP28-202ENST00000535607 OR2T33Q8NG76 320 aa6.03□□□□□ -1.44
USP28-202ENST00000535607 OR56A3Q8NH54 315 aa6.03□□□□□ -1.44
USP28-202ENST00000535607 IL17DQ8TAD2 202 aa6.03□□□□□ -1.44
USP28-202ENST00000535607 SUN3Q8TAQ9 357 aa6.03□□□□□ -1.44
USP28-202ENST00000535607 LKAAEAR1Q8TD35 194 aa6.03□□□□□ -1.44
USP28-202ENST00000535607 SLC38A5Q8WUX1 472 aa6.03□□□□□ -1.44
USP28-202ENST00000535607 APOBEC4Q8WW27 367 aaKnown RBP6.03□□□□□ -1.44
USP28-202ENST00000535607 MRPS31Q92665 395 aaKnown RBP6.03□□□□□ -1.44
USP28-202ENST00000535607 ECHDC3Q96DC8 303 aa6.03□□□□□ -1.44
USP28-202ENST00000535607 WDR34Q96EX3 536 aa6.03□□□□□ -1.44
USP28-202ENST00000535607 NARS2Q96I59 477 aaKnown RBP6.03□□□□□ -1.44
USP28-202ENST00000535607 SLC35G5Q96KT7 338 aa6.03□□□□□ -1.44
USP28-202ENST00000535607 FCRL4Q96PJ5 515 aa6.03□□□□□ -1.44
USP28-202ENST00000535607 LYSMD1Q96S90 227 aa6.03□□□□□ -1.44
USP28-202ENST00000535607 DDOQ99489 341 aa6.03□□□□□ -1.44
USP28-202ENST00000535607 TSNAXQ99598 290 aaKnown RBP6.03□□□□□ -1.44
USP28-202ENST00000535607 TREX2Q9BQ50 279 aaPredicted RBP6.03□□□□□ -1.44
USP28-202ENST00000535607 ZNF251Q9BRH9 671 aa6.03□□□□□ -1.44
USP28-202ENST00000535607 ALG8Q9BVK2 526 aa6.03□□□□□ -1.44
USP28-202ENST00000535607 KRTAP4-8Q9BYQ9 185 aa6.03□□□□□ -1.44
USP28-202ENST00000535607 ATG10Q9H0Y0 220 aa6.03□□□□□ -1.44
USP28-202ENST00000535607 SLC38A1Q9H2H9 487 aa6.03□□□□□ -1.44
USP28-202ENST00000535607 ZNF703Q9H7S9 590 aaPredicted RBP6.03□□□□□ -1.44
USP28-202ENST00000535607 EVA1AQ9H8M9 152 aa6.03□□□□□ -1.44
USP28-202ENST00000535607 NOX3Q9HBY0 568 aa6.03□□□□□ -1.44
USP28-202ENST00000535607 BCL2L10Q9HD36 194 aa6.03□□□□□ -1.44
USP28-202ENST00000535607 TMEM138Q9NPI0 162 aa6.03□□□□□ -1.44
USP28-202ENST00000535607 EQTNQ9NQ60 294 aa6.03□□□□□ -1.44
USP28-202ENST00000535607 SLC35C2Q9NQQ7 365 aa6.03□□□□□ -1.44
USP28-202ENST00000535607 KLHL1Q9NR64 748 aa6.03□□□□□ -1.44
USP28-202ENST00000535607 ACSS1Q9NUB1 689 aaPredicted RBP6.03□□□□□ -1.44
USP28-202ENST00000535607 TAS2R10Q9NYW0 307 aa6.03□□□□□ -1.44
USP28-202ENST00000535607 COMMD9Q9P000 198 aa6.03□□□□□ -1.44
USP28-202ENST00000535607 ENTPD4Q9Y227 616 aa6.03□□□□□ -1.44
USP28-202ENST00000535607 CA5BQ9Y2D0 317 aa6.03□□□□□ -1.44
USP28-202ENST00000535607 YARS2Q9Y2Z4 477 aaKnown RBP6.03□□□□□ -1.44
USP28-202ENST00000535607 PRSS21Q9Y6M0 314 aa6.03□□□□□ -1.44
USP28-202ENST00000535607 HELZP42694 1942 aaKnown RBP6.03□□□□□ -1.44
USP28-202ENST00000535607 SZT2Q5T011 3432 aa6.02□□□□□ -1.45
USP28-202ENST00000535607 C2orf92A0A1B0GVN3 265 aa6.02□□□□□ -1.45
USP28-202ENST00000535607 EPOPA6NHQ4 379 aa6.02□□□□□ -1.45
USP28-202ENST00000535607 LRRC72A6NJI9 287 aa6.02□□□□□ -1.45
USP28-202ENST00000535607 ANXA2P2A6NMY6 339 aa6.02□□□□□ -1.45
USP28-202ENST00000535607 E7EQ34 232 aa6.02□□□□□ -1.45
USP28-202ENST00000535607 SURF4O15260 269 aa6.02□□□□□ -1.45
USP28-202ENST00000535607 YY2O15391 372 aa6.02□□□□□ -1.45
USP28-202ENST00000535607 SSX5O60225 188 aa6.02□□□□□ -1.45
USP28-202ENST00000535607 SELENOFO60613 162 aa6.02□□□□□ -1.45
USP28-202ENST00000535607 GALR3O60755 368 aaPredicted RBP6.02□□□□□ -1.45
USP28-202ENST00000535607 ZNF821O75541 412 aaPredicted RBP6.02□□□□□ -1.45
USP28-202ENST00000535607 CDC123O75794 336 aaPredicted RBP6.02□□□□□ -1.45
USP28-202ENST00000535607 SLCO2B1O94956 709 aa6.02□□□□□ -1.45
USP28-202ENST00000535607 CLDN7O95471 211 aa6.02□□□□□ -1.45
USP28-202ENST00000535607 PAK4O96013 591 aaPredicted RBP6.02□□□□□ -1.45
USP28-202ENST00000535607 HPP00738 406 aa6.02□□□□□ -1.45
USP28-202ENST00000535607 ATP1B1P05026 303 aa6.02□□□□□ -1.45
USP28-202ENST00000535607 CSF1P09603 554 aa6.02□□□□□ -1.45
USP28-202ENST00000535607 CD3GP09693 182 aa6.02□□□□□ -1.45
USP28-202ENST00000535607 ACP5P13686 325 aa6.02□□□□□ -1.45
USP28-202ENST00000535607 PRG2P13727 222 aa6.02□□□□□ -1.45
USP28-202ENST00000535607 ZNF8P17098 575 aaPredicted RBP6.02□□□□□ -1.45
USP28-202ENST00000535607 S100PP25815 95 aa6.02□□□□□ -1.45
USP28-202ENST00000535607 GABRR2P28476 465 aa6.02□□□□□ -1.45
USP28-202ENST00000535607 PRKAR1BP31321 381 aa6.02□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms