RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 RNF139Q8WU17 664 aa3.05□□□□□ -1.92
CD44-235ENST00000532339 CNRIP1Q96F85 164 aaPredicted RBP3.05□□□□□ -1.92
CD44-235ENST00000532339 TNFRSF13CQ96RJ3 184 aa3.05□□□□□ -1.92
CD44-235ENST00000532339 WRAP53Q9BUR4 548 aaKnown RBP3.05□□□□□ -1.92
CD44-235ENST00000532339 NMNAT2Q9BZQ4 307 aa3.05□□□□□ -1.92
CD44-235ENST00000532339 UCK1Q9HA47 277 aa3.05□□□□□ -1.92
CD44-235ENST00000532339 ROPN1Q9HAT0 212 aaPredicted RBP3.05□□□□□ -1.92
CD44-235ENST00000532339 GPATCH2LQ9NWQ4 482 aa3.05□□□□□ -1.92
CD44-235ENST00000532339 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP3.05□□□□□ -1.92
CD44-235ENST00000532339 EIF3LQ9Y262 564 aaKnown RBP3.05□□□□□ -1.92
CD44-235ENST00000532339 MRPS18CQ9Y3D5 142 aaKnown RBP3.05□□□□□ -1.92
CD44-235ENST00000532339 WIPI2Q9Y4P8 454 aa3.05□□□□□ -1.92
CD44-235ENST00000532339 STYXL1Q9Y6J8 313 aa3.05□□□□□ -1.92
CD44-235ENST00000532339 CSMD3Q7Z407 3707 aa3.05□□□□□ -1.92
CD44-235ENST00000532339 PCNX3Q9H6A9 2034 aa3.05□□□□□ -1.92
CD44-235ENST00000532339 CHD5Q8TDI0 1954 aa3.04□□□□□ -1.92
CD44-235ENST00000532339 IGHV3OR16-10A0A075B7F0 116 aa3.04□□□□□ -1.92
CD44-235ENST00000532339 IGHV5-51A0A0C4DH38 117 aa3.04□□□□□ -1.92
CD44-235ENST00000532339 A0A1B0GTH9 108 aa3.04□□□□□ -1.92
CD44-235ENST00000532339 E7ENQ6 273 aa3.04□□□□□ -1.92
CD44-235ENST00000532339 K7ERQ8 282 aa3.04□□□□□ -1.92
CD44-235ENST00000532339 TNFSF12O43508 249 aa3.04□□□□□ -1.92
CD44-235ENST00000532339 BUB1O43683 1085 aa3.04□□□□□ -1.92
CD44-235ENST00000532339 KIAA0513O60268 411 aa3.04□□□□□ -1.92
CD44-235ENST00000532339 PALMO75781 387 aa3.04□□□□□ -1.92
CD44-235ENST00000532339 ANXA9O76027 345 aa3.04□□□□□ -1.92
CD44-235ENST00000532339 NXPH4O95158 308 aa3.04□□□□□ -1.92
CD44-235ENST00000532339 DIRAS3O95661 229 aa3.04□□□□□ -1.92
CD44-235ENST00000532339 F10P00742 488 aa3.04□□□□□ -1.92
CD44-235ENST00000532339 TNNC2P02585 160 aa3.04□□□□□ -1.92
CD44-235ENST00000532339 APRTP07741 180 aa3.04□□□□□ -1.92
CD44-235ENST00000532339 FHP07954 510 aa3.04□□□□□ -1.92
CD44-235ENST00000532339 HIST1H2AGP0C0S8 130 aaPredicted RBP3.04□□□□□ -1.92
CD44-235ENST00000532339 PRDX2P32119 198 aa3.04□□□□□ -1.92
CD44-235ENST00000532339 ACADSBP45954 432 aa3.04□□□□□ -1.92
CD44-235ENST00000532339 MTIF2P46199 727 aaKnown RBP3.04□□□□□ -1.92
CD44-235ENST00000532339 CAPZBP47756 277 aa3.04□□□□□ -1.92
CD44-235ENST00000532339 CCNHP51946 323 aaPredicted RBP3.04□□□□□ -1.92
CD44-235ENST00000532339 RPL27P61353 136 aaKnown RBP3.04□□□□□ -1.92
CD44-235ENST00000532339 MYBPC1Q00872 1141 aa3.04□□□□□ -1.92
CD44-235ENST00000532339 KLHL30Q0D2K2 578 aa3.04□□□□□ -1.92
CD44-235ENST00000532339 KLF5Q13887 457 aaPredicted RBP3.04□□□□□ -1.92
CD44-235ENST00000532339 FASTKD3Q14CZ7 662 aaKnown RBP3.04□□□□□ -1.92
CD44-235ENST00000532339 P2RY14Q15391 338 aa3.04□□□□□ -1.92
CD44-235ENST00000532339 ZSWIM7Q19AV6 140 aa3.04□□□□□ -1.92
CD44-235ENST00000532339 TMEM52BQ4KMG9 183 aa3.04□□□□□ -1.92
CD44-235ENST00000532339 GPRC6AQ5T6X5 926 aa3.04□□□□□ -1.92
CD44-235ENST00000532339 C1orf189Q5VU69 101 aa3.04□□□□□ -1.92
CD44-235ENST00000532339 IL23RQ5VWK5 629 aa3.04□□□□□ -1.92
CD44-235ENST00000532339 MLIPQ5VWP3 458 aa3.04□□□□□ -1.92
CD44-235ENST00000532339 FRRS1Q6ZNA5 592 aa3.04□□□□□ -1.92
CD44-235ENST00000532339 DNM1P46Q6ZS02 220 aa3.04□□□□□ -1.92
CD44-235ENST00000532339 FAM92BQ6ZTR7 304 aa3.04□□□□□ -1.92
CD44-235ENST00000532339 AMZ2Q86W34 360 aa3.04□□□□□ -1.92
CD44-235ENST00000532339 HIST2H2ABQ8IUE6 130 aaPredicted RBP3.04□□□□□ -1.92
CD44-235ENST00000532339 LINC00612Q8N6U2 182 aa3.04□□□□□ -1.92
CD44-235ENST00000532339 RELL2Q8NC24 303 aaPredicted RBP3.04□□□□□ -1.92
CD44-235ENST00000532339 OR52B4Q8NGK2 314 aa3.04□□□□□ -1.92
CD44-235ENST00000532339 OR6F1Q8NGZ6 308 aa3.04□□□□□ -1.92
CD44-235ENST00000532339 LINC01560Q8TB33 94 aa3.04□□□□□ -1.92
CD44-235ENST00000532339 ZNF519Q8TB69 540 aa3.04□□□□□ -1.92
CD44-235ENST00000532339 MRAPQ8TCY5 172 aa3.04□□□□□ -1.92
CD44-235ENST00000532339 SELENOMQ8WWX9 145 aa3.04□□□□□ -1.92
CD44-235ENST00000532339 PSMF1Q92530 271 aa3.04□□□□□ -1.92
CD44-235ENST00000532339 PHYHIPQ92561 330 aa3.04□□□□□ -1.92
CD44-235ENST00000532339 RASL10AQ92737 203 aa3.04□□□□□ -1.92
CD44-235ENST00000532339 HIST1H2ACQ93077 130 aa3.04□□□□□ -1.92
CD44-235ENST00000532339 C11orf52Q96A22 123 aa3.04□□□□□ -1.92
CD44-235ENST00000532339 SYAP1Q96A49 352 aaPredicted RBP3.04□□□□□ -1.92
CD44-235ENST00000532339 ANKRD36BP1Q96IX9 119 aa3.04□□□□□ -1.92
CD44-235ENST00000532339 TTYH2Q9BSA4 534 aa3.04□□□□□ -1.92
CD44-235ENST00000532339 RAB11FIP5Q9BXF6 653 aa3.04□□□□□ -1.92
CD44-235ENST00000532339 RAB33BQ9H082 229 aa3.04□□□□□ -1.92
CD44-235ENST00000532339 ZSCAN16Q9H4T2 348 aaPredicted RBP3.04□□□□□ -1.92
CD44-235ENST00000532339 SUDS3Q9H7L9 328 aaPredicted RBP3.04□□□□□ -1.92
CD44-235ENST00000532339 ACTR8Q9H981 624 aa3.04□□□□□ -1.92
CD44-235ENST00000532339 UBE2TQ9NPD8 197 aaPredicted RBP3.04□□□□□ -1.92
CD44-235ENST00000532339 RBAKQ9NYW8 714 aaPredicted RBP3.04□□□□□ -1.92
CD44-235ENST00000532339 ERVK-18Q9QC07 812 aa3.04□□□□□ -1.92
CD44-235ENST00000532339 LHX3Q9UBR4 397 aa3.04□□□□□ -1.92
CD44-235ENST00000532339 MIOXQ9UGB7 285 aa3.04□□□□□ -1.92
CD44-235ENST00000532339 GNPTGQ9UJJ9 305 aa3.04□□□□□ -1.92
CD44-235ENST00000532339 IKZF3Q9UKT9 509 aa3.04□□□□□ -1.92
CD44-235ENST00000532339 TMCC3Q9ULS5 477 aa3.04□□□□□ -1.92
CD44-235ENST00000532339 KLHDC2Q9Y2U9 406 aa3.04□□□□□ -1.92
CD44-235ENST00000532339 OR51B4Q9Y5P0 310 aa3.04□□□□□ -1.92
CD44-235ENST00000532339 AP1M2Q9Y6Q5 423 aa3.04□□□□□ -1.92
CD44-235ENST00000532339 U3KQV3 271 aa3.04□□□□□ -1.92
CD44-235ENST00000532339 NUP210LQ5VU65 1888 aa3.03□□□□□ -1.92
CD44-235ENST00000532339 KLF18A0A0U1RQI7 1052 aa3.03□□□□□ -1.92
CD44-235ENST00000532339 LOC390937A0A1W2PQ73 354 aa3.03□□□□□ -1.92
CD44-235ENST00000532339 EPM2AB3EWF7 344 aa3.03□□□□□ -1.92
CD44-235ENST00000532339 ANKRD63C9JTQ0 380 aa3.03□□□□□ -1.92
CD44-235ENST00000532339 NDC80O14777 642 aa3.03□□□□□ -1.92
CD44-235ENST00000532339 CASKO14936 926 aa3.03□□□□□ -1.92
CD44-235ENST00000532339 SCAMP2O15127 329 aaKnown RBP3.03□□□□□ -1.92
CD44-235ENST00000532339 IDH3BO43837 385 aa3.03□□□□□ -1.92
CD44-235ENST00000532339 NEMFO60524 1076 aa3.03□□□□□ -1.92
CD44-235ENST00000532339 MTRF1O75570 445 aaKnown RBP3.03□□□□□ -1.92
CD44-235ENST00000532339 CLDN9O95484 217 aa3.03□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 81.2 ms