RNA–Protein interactions for RNA: ENST00000515516.1

TCOF1-215, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 661 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-215ENST00000515516 PATL1Q86TB9 770 aaKnown RBP11.93□□□□□ -0.5
TCOF1-215ENST00000515516 COMTD1Q86VU5 262 aa11.93□□□□□ -0.5
TCOF1-215ENST00000515516 SCAIQ8N9R8 606 aa11.93□□□□□ -0.5
TCOF1-215ENST00000515516 ADPRHL1Q8NDY3 354 aa11.93□□□□□ -0.5
TCOF1-215ENST00000515516 MCHR1Q99705 422 aa11.93□□□□□ -0.5
TCOF1-215ENST00000515516 KATNB1Q9BVA0 655 aa11.93□□□□□ -0.5
TCOF1-215ENST00000515516 B3GAT2Q9NPZ5 323 aa11.93□□□□□ -0.5
TCOF1-215ENST00000515516 MRGBPQ9NV56 204 aa11.93□□□□□ -0.5
TCOF1-215ENST00000515516 SEC14L4Q9UDX3 406 aa11.93□□□□□ -0.5
TCOF1-215ENST00000515516 NIPBLQ6KC79 2804 aaeCLIP11.93□□□□□ -0.53e-7■■■■■ 27.8
TCOF1-215ENST00000515516 IGKV1D-42A0A075B6H8 117 aa11.92□□□□□ -0.5
TCOF1-215ENST00000515516 ZNF726A6NNF4 738 aa11.92□□□□□ -0.5
TCOF1-215ENST00000515516 RPL36A-HNRNPH2H7BZ11 118 aa11.92□□□□□ -0.5
TCOF1-215ENST00000515516 H7C417 338 aa11.92□□□□□ -0.5
TCOF1-215ENST00000515516 FMO6PO60774 539 aa11.92□□□□□ -0.5
TCOF1-215ENST00000515516 FZD7O75084 574 aa11.92□□□□□ -0.5
TCOF1-215ENST00000515516 OR6A2O95222 327 aa11.92□□□□□ -0.5
TCOF1-215ENST00000515516 C8BP07358 591 aa11.92□□□□□ -0.5
TCOF1-215ENST00000515516 TROVE2P10155 538 aaKnown RBP eCLIP11.92□□□□□ -0.5
TCOF1-215ENST00000515516 CAPZA2P47755 286 aa11.92□□□□□ -0.5
TCOF1-215ENST00000515516 CDH12P55289 794 aa11.92□□□□□ -0.5
TCOF1-215ENST00000515516 SNRPD2P62316 118 aaKnown RBP11.92□□□□□ -0.5
TCOF1-215ENST00000515516 ARF1P84077 181 aaKnown RBP11.92□□□□□ -0.5
TCOF1-215ENST00000515516 CYLC2Q14093 348 aaPredicted RBP11.92□□□□□ -0.5
TCOF1-215ENST00000515516 C3orf36Q3SXR2 165 aa11.92□□□□□ -0.5
TCOF1-215ENST00000515516 CARD17Q5XLA6 110 aa11.92□□□□□ -0.5
TCOF1-215ENST00000515516 ZNF613Q6PF04 617 aa11.92□□□□□ -0.5
TCOF1-215ENST00000515516 LINGO2Q7L985 606 aa11.92□□□□□ -0.5
TCOF1-215ENST00000515516 SNX32Q86XE0 403 aa11.92□□□□□ -0.5
TCOF1-215ENST00000515516 PTOV1Q86YD1 416 aa11.92□□□□□ -0.5
TCOF1-215ENST00000515516 CCDC36Q8IYA8 594 aa11.92□□□□□ -0.5
TCOF1-215ENST00000515516 FBXO17Q96EF6 278 aa11.92□□□□□ -0.5
TCOF1-215ENST00000515516 OR2M2Q96R28 347 aa11.92□□□□□ -0.5
TCOF1-215ENST00000515516 SH3GL1Q99961 368 aa11.92□□□□□ -0.5
TCOF1-215ENST00000515516 TMEM43Q9BTV4 400 aa11.92□□□□□ -0.5
TCOF1-215ENST00000515516 RSPO3Q9BXY4 272 aaPredicted RBP11.92□□□□□ -0.5
TCOF1-215ENST00000515516 ZNF385DQ9H6B1 395 aa11.92□□□□□ -0.5
TCOF1-215ENST00000515516 CRLF2Q9HC73 371 aa11.92□□□□□ -0.5
TCOF1-215ENST00000515516 GPR35Q9HC97 309 aa11.92□□□□□ -0.5
TCOF1-215ENST00000515516 B3GAT1Q9P2W7 334 aa11.92□□□□□ -0.5
TCOF1-215ENST00000515516 NOX1Q9Y5S8 564 aa11.92□□□□□ -0.5
TCOF1-215ENST00000515516 USF3Q68DE3 2245 aa11.92□□□□□ -0.5
TCOF1-215ENST00000515516 FREM1Q5H8C1 2179 aa11.92□□□□□ -0.5
TCOF1-215ENST00000515516 M0R3G1 203 aa11.91□□□□□ -0.5
TCOF1-215ENST00000515516 M0R3H8 397 aa11.91□□□□□ -0.5
TCOF1-215ENST00000515516 ZNF432O94892 652 aa11.91□□□□□ -0.5
TCOF1-215ENST00000515516 MT-ATP6P00846 226 aa11.91□□□□□ -0.5
TCOF1-215ENST00000515516 BGLAPP02818 100 aa11.91□□□□□ -0.5
TCOF1-215ENST00000515516 OPN1SWP03999 348 aa11.91□□□□□ -0.5
TCOF1-215ENST00000515516 CSF3P09919 207 aa11.91□□□□□ -0.5
TCOF1-215ENST00000515516 H2AFXP16104 143 aaPredicted RBP11.91□□□□□ -0.5
TCOF1-215ENST00000515516 AHCYP23526 432 aa11.91□□□□□ -0.5
TCOF1-215ENST00000515516 SERPINF1P36955 418 aa11.91□□□□□ -0.5
TCOF1-215ENST00000515516 EFNA4P52798 201 aa11.91□□□□□ -0.5
TCOF1-215ENST00000515516 PCBP3P57721 371 aaKnown RBP11.91□□□□□ -0.5
TCOF1-215ENST00000515516 TUBA1BP68363 451 aa11.91□□□□□ -0.5
TCOF1-215ENST00000515516 TUBA4AP68366 448 aa11.91□□□□□ -0.5
TCOF1-215ENST00000515516 PUDPQ08623 228 aa11.91□□□□□ -0.5
TCOF1-215ENST00000515516 CEACAM16Q2WEN9 425 aa11.91□□□□□ -0.5
TCOF1-215ENST00000515516 MMEL1Q495T6 779 aa11.91□□□□□ -0.5
TCOF1-215ENST00000515516 TTC33Q6PID6 262 aaPredicted RBP11.91□□□□□ -0.5
TCOF1-215ENST00000515516 DNM1P46Q6ZS02 220 aa11.91□□□□□ -0.5
TCOF1-215ENST00000515516 TUBA1AQ71U36 451 aa11.91□□□□□ -0.5
TCOF1-215ENST00000515516 RETREG3Q86VR2 466 aa11.91□□□□□ -0.5
TCOF1-215ENST00000515516 FAM169BQ8N8A8 192 aa11.91□□□□□ -0.5
TCOF1-215ENST00000515516 OR4F15Q8NGB8 312 aa11.91□□□□□ -0.5
TCOF1-215ENST00000515516 OR10A6Q8NH74 314 aa11.91□□□□□ -0.5
TCOF1-215ENST00000515516 RASSF5Q8WWW0 418 aa11.91□□□□□ -0.5
TCOF1-215ENST00000515516 HTRA1Q92743 480 aa11.91□□□□□ -0.5
TCOF1-215ENST00000515516 ARHGDIGQ99819 225 aa11.91□□□□□ -0.5
TCOF1-215ENST00000515516 KAT8Q9H7Z6 458 aaKnown RBP11.91□□□□□ -0.5
TCOF1-215ENST00000515516 YAE1D1Q9NRH1 226 aa11.91□□□□□ -0.5
TCOF1-215ENST00000515516 MRPL39Q9NYK5 338 aaKnown RBP11.91□□□□□ -0.5
TCOF1-215ENST00000515516 POFUT2Q9Y2G5 429 aa11.91□□□□□ -0.5
TCOF1-215ENST00000515516 FKBP7Q9Y680 259 aa11.91□□□□□ -0.5
TCOF1-215ENST00000515516 IGHV4-30-2A0A087WSY4 118 aa11.9□□□□□ -0.5
TCOF1-215ENST00000515516 CPSF4LA6NMK7 179 aaKnown RBP11.9□□□□□ -0.5
TCOF1-215ENST00000515516 MS4A18H0YCH9 400 aa11.9□□□□□ -0.5
TCOF1-215ENST00000515516 TRAF3IP2O43734 574 aaPredicted RBP11.9□□□□□ -0.5
TCOF1-215ENST00000515516 CHP2O43745 196 aa11.9□□□□□ -0.5
TCOF1-215ENST00000515516 TLX2O43763 284 aaPredicted RBP11.9□□□□□ -0.5
TCOF1-215ENST00000515516 CD5LO43866 347 aa11.9□□□□□ -0.5
TCOF1-215ENST00000515516 TPST2O60704 377 aa11.9□□□□□ -0.5
TCOF1-215ENST00000515516 F12P00748 615 aaPredicted RBP11.9□□□□□ -0.5
TCOF1-215ENST00000515516 HIST1H2ABP04908 130 aa11.9□□□□□ -0.5
TCOF1-215ENST00000515516 CECR9P0C854 216 aa11.9□□□□□ -0.5
TCOF1-215ENST00000515516 CBR1P16152 277 aa11.9□□□□□ -0.5
TCOF1-215ENST00000515516 SLC25A16P16260 332 aa11.9□□□□□ -0.5
TCOF1-215ENST00000515516 PCGF2P35227 344 aa11.9□□□□□ -0.5
TCOF1-215ENST00000515516 ARR3P36575 388 aa11.9□□□□□ -0.5
TCOF1-215ENST00000515516 NAAAQ02083 359 aa11.9□□□□□ -0.5
TCOF1-215ENST00000515516 POU3F1Q03052 451 aaPredicted RBP11.9□□□□□ -0.5
TCOF1-215ENST00000515516 SELPLGQ14242 412 aa11.9□□□□□ -0.5
TCOF1-215ENST00000515516 DUSP7Q16829 419 aa11.9□□□□□ -0.5
TCOF1-215ENST00000515516 MS4A18Q3C1V0 323 aa11.9□□□□□ -0.5
TCOF1-215ENST00000515516 ENTPD8Q5MY95 495 aa11.9□□□□□ -0.5
TCOF1-215ENST00000515516 VHLLQ6RSH7 139 aa11.9□□□□□ -0.5
TCOF1-215ENST00000515516 HIST3H2AQ7L7L0 130 aa11.9□□□□□ -0.5
TCOF1-215ENST00000515516 SLC46A3Q7Z3Q1 461 aa11.9□□□□□ -0.5
TCOF1-215ENST00000515516 PXKQ7Z7A4 578 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms