RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 ERN1O75460 977 aaKnown RBP7.19□□□□□ -1.26
LIMCH1-219ENST00000514096 IGHEP01854 428 aa7.19□□□□□ -1.26
LIMCH1-219ENST00000514096 BMP5P22003 454 aa7.19□□□□□ -1.26
LIMCH1-219ENST00000514096 MAPK1P28482 360 aa7.19□□□□□ -1.26
LIMCH1-219ENST00000514096 TRHRP34981 398 aaPredicted RBP7.19□□□□□ -1.26
LIMCH1-219ENST00000514096 MFAP5Q13361 173 aa7.19□□□□□ -1.26
LIMCH1-219ENST00000514096 ZNHIT3Q15649 155 aaPredicted RBP7.19□□□□□ -1.26
LIMCH1-219ENST00000514096 YIF1BQ5BJH7 314 aa7.19□□□□□ -1.26
LIMCH1-219ENST00000514096 CRB2Q5IJ48 1285 aa7.19□□□□□ -1.26
LIMCH1-219ENST00000514096 C6orf136Q5SQH8 315 aa7.19□□□□□ -1.26
LIMCH1-219ENST00000514096 SLC22A25Q6T423 547 aa7.19□□□□□ -1.26
LIMCH1-219ENST00000514096 TIFABQ6ZNK6 161 aa7.19□□□□□ -1.26
LIMCH1-219ENST00000514096 GALNT5Q7Z7M9 940 aa7.19□□□□□ -1.26
LIMCH1-219ENST00000514096 FAM26EQ8N5C1 309 aa7.19□□□□□ -1.26
LIMCH1-219ENST00000514096 BCORP1Q8N888 145 aa7.19□□□□□ -1.26
LIMCH1-219ENST00000514096 FAM98AQ8NCA5 519 aaKnown RBP7.19□□□□□ -1.26
LIMCH1-219ENST00000514096 OR5J2Q8NH18 312 aa7.19□□□□□ -1.26
LIMCH1-219ENST00000514096 DUSP19Q8WTR2 217 aa7.19□□□□□ -1.26
LIMCH1-219ENST00000514096 TRMOQ9BU70 441 aa7.19□□□□□ -1.26
LIMCH1-219ENST00000514096 NPLQ9BXD5 320 aaPredicted RBP7.19□□□□□ -1.26
LIMCH1-219ENST00000514096 SLC29A3Q9BZD2 475 aa7.19□□□□□ -1.26
LIMCH1-219ENST00000514096 MS4A12Q9NXJ0 267 aa7.19□□□□□ -1.26
LIMCH1-219ENST00000514096 B3GNT2Q9NY97 397 aa7.19□□□□□ -1.26
LIMCH1-219ENST00000514096 GHRLQ9UBU3 117 aa7.19□□□□□ -1.26
LIMCH1-219ENST00000514096 A0A1W2PRB8 838 aa7.19□□□□□ -1.26
LIMCH1-219ENST00000514096 C1orf196B1AJZ1 125 aa7.19□□□□□ -1.26
LIMCH1-219ENST00000514096 TGOLN2O43493 480 aa7.19□□□□□ -1.26
LIMCH1-219ENST00000514096 PLOD3O60568 738 aa7.19□□□□□ -1.26
LIMCH1-219ENST00000514096 DDAH2O95865 285 aa7.19□□□□□ -1.26
LIMCH1-219ENST00000514096 MAGEA2P43356 314 aa7.19□□□□□ -1.26
LIMCH1-219ENST00000514096 PSME3P61289 254 aa7.19□□□□□ -1.26
LIMCH1-219ENST00000514096 SELPLGQ14242 412 aa7.19□□□□□ -1.26
LIMCH1-219ENST00000514096 GPAT3Q53EU6 434 aa7.19□□□□□ -1.26
LIMCH1-219ENST00000514096 FHL5Q5TD97 284 aa7.19□□□□□ -1.26
LIMCH1-219ENST00000514096 NRARPQ7Z6K4 114 aa7.19□□□□□ -1.26
LIMCH1-219ENST00000514096 COX18Q8N8Q8 333 aa7.19□□□□□ -1.26
LIMCH1-219ENST00000514096 TMEM178AQ8NBL3 297 aa7.19□□□□□ -1.26
LIMCH1-219ENST00000514096 SLC16A11Q8NCK7 471 aa7.19□□□□□ -1.26
LIMCH1-219ENST00000514096 OR4Q3Q8NH05 313 aa7.19□□□□□ -1.26
LIMCH1-219ENST00000514096 PHOSPHO1Q8TCT1 267 aa7.19□□□□□ -1.26
LIMCH1-219ENST00000514096 ZC3HAV1LQ96H79 300 aaKnown RBP7.19□□□□□ -1.26
LIMCH1-219ENST00000514096 AMDHD1Q96NU7 426 aa7.19□□□□□ -1.26
LIMCH1-219ENST00000514096 TBL1XR1Q9BZK7 514 aa7.19□□□□□ -1.26
LIMCH1-219ENST00000514096 GLIPR2Q9H4G4 154 aa7.19□□□□□ -1.26
LIMCH1-219ENST00000514096 EXOSC4Q9NPD3 245 aaKnown RBP7.19□□□□□ -1.26
LIMCH1-219ENST00000514096 FLRT3Q9NZU0 649 aa7.19□□□□□ -1.26
LIMCH1-219ENST00000514096 LIPGQ9Y5X9 500 aa7.19□□□□□ -1.26
LIMCH1-219ENST00000514096 PRRC2AP48634 2157 aaKnown RBP7.19□□□□□ -1.26
LIMCH1-219ENST00000514096 CXorf65A6NEN9 183 aa7.18□□□□□ -1.26
LIMCH1-219ENST00000514096 SP1P08047 785 aa7.18□□□□□ -1.26
LIMCH1-219ENST00000514096 CD1EP15812 388 aa7.18□□□□□ -1.26
LIMCH1-219ENST00000514096 SIRPAP78324 504 aa7.18□□□□□ -1.26
LIMCH1-219ENST00000514096 GPR176Q14439 515 aa7.18□□□□□ -1.26
LIMCH1-219ENST00000514096 SGCBQ16585 318 aa7.18□□□□□ -1.26
LIMCH1-219ENST00000514096 GTDC1Q4AE62 458 aa7.18□□□□□ -1.26
LIMCH1-219ENST00000514096 EIPR1Q53HC9 387 aa7.18□□□□□ -1.26
LIMCH1-219ENST00000514096 SLC22A10Q63ZE4 541 aa7.18□□□□□ -1.26
LIMCH1-219ENST00000514096 QSOX2Q6ZRP7 698 aa7.18□□□□□ -1.26
LIMCH1-219ENST00000514096 MSANTD1Q6ZTZ1 278 aa7.18□□□□□ -1.26
LIMCH1-219ENST00000514096 MARCH3Q86UD3 253 aa7.18□□□□□ -1.26
LIMCH1-219ENST00000514096 CATSPERDQ86XM0 798 aa7.18□□□□□ -1.26
LIMCH1-219ENST00000514096 CNEP1R1Q8N9A8 125 aa7.18□□□□□ -1.26
LIMCH1-219ENST00000514096 OR56B2PQ8NGI1 322 aa7.18□□□□□ -1.26
LIMCH1-219ENST00000514096 OR4A15Q8NGL6 344 aa7.18□□□□□ -1.26
LIMCH1-219ENST00000514096 ZNF596Q8TC21 504 aa7.18□□□□□ -1.26
LIMCH1-219ENST00000514096 ERRFI1Q9UJM3 462 aaPredicted RBP7.18□□□□□ -1.26
LIMCH1-219ENST00000514096 STUB1Q9UNE7 303 aa7.18□□□□□ -1.26
LIMCH1-219ENST00000514096 NPFFR2Q9Y5X5 522 aa7.18□□□□□ -1.26
LIMCH1-219ENST00000514096 SHANK1Q9Y566 2161 aa7.18□□□□□ -1.26
LIMCH1-219ENST00000514096 A0A0A6YYD5 115 aa7.18□□□□□ -1.26
LIMCH1-219ENST00000514096 TYROBPO43914 113 aa7.18□□□□□ -1.26
LIMCH1-219ENST00000514096 CYTIPO60759 359 aa7.18□□□□□ -1.26
LIMCH1-219ENST00000514096 UGT2B11O75310 529 aa7.18□□□□□ -1.26
LIMCH1-219ENST00000514096 WISP1O95388 367 aa7.18□□□□□ -1.26
LIMCH1-219ENST00000514096 CRATP43155 626 aa7.18□□□□□ -1.26
LIMCH1-219ENST00000514096 RAD52P43351 418 aa7.18□□□□□ -1.26
LIMCH1-219ENST00000514096 MAGEA12P43365 314 aa7.18□□□□□ -1.26
LIMCH1-219ENST00000514096 PPP5CP53041 499 aa7.18□□□□□ -1.26
LIMCH1-219ENST00000514096 RAE1P78406 368 aaKnown RBP7.18□□□□□ -1.26
LIMCH1-219ENST00000514096 SERTAD2Q14140 314 aa7.18□□□□□ -1.26
LIMCH1-219ENST00000514096 DMRTA1Q5VZB9 504 aa7.18□□□□□ -1.26
LIMCH1-219ENST00000514096 SLC48A1Q6P1K1 146 aa7.18□□□□□ -1.26
LIMCH1-219ENST00000514096 ZNF613Q6PF04 617 aa7.18□□□□□ -1.26
LIMCH1-219ENST00000514096 TMEM205Q6UW68 189 aa7.18□□□□□ -1.26
LIMCH1-219ENST00000514096 R3HCC1LQ7Z5L2 792 aaKnown RBP7.18□□□□□ -1.26
LIMCH1-219ENST00000514096 DHFR2Q86XF0 187 aa7.18□□□□□ -1.26
LIMCH1-219ENST00000514096 HORMAD2Q8N7B1 307 aa7.18□□□□□ -1.26
LIMCH1-219ENST00000514096 OR4K17Q8NGC6 315 aa7.18□□□□□ -1.26
LIMCH1-219ENST00000514096 OR5L2Q8NGL0 311 aa7.18□□□□□ -1.26
LIMCH1-219ENST00000514096 ADAMTS15Q8TE58 950 aa7.18□□□□□ -1.26
LIMCH1-219ENST00000514096 TP53INP1Q96A56 240 aa7.18□□□□□ -1.26
LIMCH1-219ENST00000514096 PANX1Q96RD7 426 aa7.18□□□□□ -1.26
LIMCH1-219ENST00000514096 ACOXLQ9NUZ1 547 aa7.18□□□□□ -1.26
LIMCH1-219ENST00000514096 EXD2Q9NVH0 621 aa7.18□□□□□ -1.26
LIMCH1-219ENST00000514096 LYARQ9NX58 379 aaKnown RBP7.18□□□□□ -1.26
LIMCH1-219ENST00000514096 C7orf72A4D263 438 aa7.18□□□□□ -1.26
LIMCH1-219ENST00000514096 ZNF705EA8MWA4 302 aaPredicted RBP7.18□□□□□ -1.26
LIMCH1-219ENST00000514096 GTPBP1O00178 669 aaKnown RBP7.18□□□□□ -1.26
LIMCH1-219ENST00000514096 IFNA7P01567 189 aa7.18□□□□□ -1.26
LIMCH1-219ENST00000514096 MAPK3P27361 379 aaPredicted RBP7.18□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms