RNA–Protein interactions for RNA: ENST00000494728.5

VTI1A-208, Transcript of vesicle transport through interaction with t-SNAREs 1A, human

TSL 2

Gene VTI1A, Length 463 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VTI1A-208	ENST00000494728	GPX2	P18283	190 aa		10.11	□□□□□ -0.79
VTI1A-208	ENST00000494728	ATP4B	P51164	291 aa		10.11	□□□□□ -0.79
VTI1A-208	ENST00000494728	PCBP3	P57721	371 aa	Known RBP	10.11	□□□□□ -0.79
VTI1A-208	ENST00000494728	RGS8	P57771	180 aa	Predicted RBP	10.11	□□□□□ -0.79
VTI1A-208	ENST00000494728	MTPN	P58546	118 aa		10.11	□□□□□ -0.79
VTI1A-208	ENST00000494728	ARF1	P84077	181 aa	Known RBP	10.11	□□□□□ -0.79
VTI1A-208	ENST00000494728	HGFAC	Q04756	655 aa		10.11	□□□□□ -0.79
VTI1A-208	ENST00000494728	SQLE	Q14534	574 aa		10.11	□□□□□ -0.79
VTI1A-208	ENST00000494728	RAB35	Q15286	201 aa		10.11	□□□□□ -0.79
VTI1A-208	ENST00000494728	ADIPOQ	Q15848	244 aa		10.11	□□□□□ -0.79
VTI1A-208	ENST00000494728	CEACAM16	Q2WEN9	425 aa		10.11	□□□□□ -0.79
VTI1A-208	ENST00000494728	MS4A18	Q3C1V0	323 aa		10.11	□□□□□ -0.79
VTI1A-208	ENST00000494728	VHLL	Q6RSH7	139 aa		10.11	□□□□□ -0.79
VTI1A-208	ENST00000494728	WDR88	Q6ZMY6	472 aa		10.11	□□□□□ -0.79
VTI1A-208	ENST00000494728	CXXC5	Q7LFL8	322 aa	Known RBP	10.11	□□□□□ -0.79
VTI1A-208	ENST00000494728	DEPDC4	Q8N2C3	294 aa		10.11	□□□□□ -0.79
VTI1A-208	ENST00000494728	SMYD1	Q8NB12	490 aa		10.11	□□□□□ -0.79
VTI1A-208	ENST00000494728	GPR32P1	Q8NGA4	272 aa		10.11	□□□□□ -0.79
VTI1A-208	ENST00000494728	OR4D11	Q8NGI4	311 aa		10.11	□□□□□ -0.79
VTI1A-208	ENST00000494728	FAM168A	Q92567	244 aa		10.11	□□□□□ -0.79
VTI1A-208	ENST00000494728	SLC38A4	Q969I6	547 aa		10.11	□□□□□ -0.79
VTI1A-208	ENST00000494728	SLC41A3	Q96GZ6	507 aa		10.11	□□□□□ -0.79
VTI1A-208	ENST00000494728	OXGR1	Q96P68	337 aa		10.11	□□□□□ -0.79
VTI1A-208	ENST00000494728	TNFRSF13C	Q96RJ3	184 aa		10.11	□□□□□ -0.79
VTI1A-208	ENST00000494728	EMC6	Q9BV81	110 aa		10.11	□□□□□ -0.79
VTI1A-208	ENST00000494728	KATNB1	Q9BVA0	655 aa		10.11	□□□□□ -0.79
VTI1A-208	ENST00000494728	TMEM38A	Q9H6F2	299 aa		10.11	□□□□□ -0.79
VTI1A-208	ENST00000494728	ARMC7	Q9H6L4	198 aa		10.11	□□□□□ -0.79
VTI1A-208	ENST00000494728	CACYBP	Q9HB71	228 aa	Known RBP	10.11	□□□□□ -0.79
VTI1A-208	ENST00000494728	GPR35	Q9HC97	309 aa		10.11	□□□□□ -0.79
VTI1A-208	ENST00000494728	OBP2B	Q9NPH6	170 aa		10.11	□□□□□ -0.79
VTI1A-208	ENST00000494728	MED29	Q9NX70	200 aa		10.11	□□□□□ -0.79
VTI1A-208	ENST00000494728	RPS6KB2	Q9UBS0	482 aa		10.11	□□□□□ -0.79
VTI1A-208	ENST00000494728	NIPSNAP3A	Q9UFN0	247 aa	Predicted RBP	10.11	□□□□□ -0.79
VTI1A-208	ENST00000494728	TES	Q9UGI8	421 aa	Known RBP	10.11	□□□□□ -0.79
VTI1A-208	ENST00000494728		A0A087WUJ7	227 aa		10.1	□□□□□ -0.79
VTI1A-208	ENST00000494728	VWC2L	B2RUY7	222 aa		10.1	□□□□□ -0.79
VTI1A-208	ENST00000494728	RPL36A-HNRNPH2	H7BZ11	118 aa		10.1	□□□□□ -0.79
VTI1A-208	ENST00000494728	MFN2	O95140	757 aa		10.1	□□□□□ -0.79
VTI1A-208	ENST00000494728	LYPD3	O95274	346 aa		10.1	□□□□□ -0.79
VTI1A-208	ENST00000494728	TP53	P04637	393 aa	Predicted RBP	10.1	□□□□□ -0.79
VTI1A-208	ENST00000494728	IGHV4-31	P0DP07	118 aa		10.1	□□□□□ -0.79
VTI1A-208	ENST00000494728	ZNF43	P17038	809 aa		10.1	□□□□□ -0.79
VTI1A-208	ENST00000494728	GTF2E2	P29084	291 aa	Known RBP	10.1	□□□□□ -0.79
VTI1A-208	ENST00000494728	IDH3G	P51553	393 aa	Predicted RBP	10.1	□□□□□ -0.79
VTI1A-208	ENST00000494728	EFNA4	P52798	201 aa		10.1	□□□□□ -0.79
VTI1A-208	ENST00000494728	CRYBA2	P53672	197 aa		10.1	□□□□□ -0.79
VTI1A-208	ENST00000494728	CDH12	P55289	794 aa		10.1	□□□□□ -0.79
VTI1A-208	ENST00000494728	VLDLR	P98155	873 aa		10.1	□□□□□ -0.79
VTI1A-208	ENST00000494728	POU3F1	Q03052	451 aa	Predicted RBP	10.1	□□□□□ -0.79
VTI1A-208	ENST00000494728	LOXL1	Q08397	574 aa	Predicted RBP	10.1	□□□□□ -0.79
VTI1A-208	ENST00000494728	OR1Q1	Q15612	314 aa		10.1	□□□□□ -0.79
VTI1A-208	ENST00000494728	MSMP	Q1L6U9	139 aa		10.1	□□□□□ -0.79
VTI1A-208	ENST00000494728	RUNDC3A	Q59EK9	446 aa		10.1	□□□□□ -0.79
VTI1A-208	ENST00000494728	CARD17	Q5XLA6	110 aa		10.1	□□□□□ -0.79
VTI1A-208	ENST00000494728	HMBOX1	Q6NT76	420 aa		10.1	□□□□□ -0.79
VTI1A-208	ENST00000494728	ANKRD16	Q6P6B7	361 aa		10.1	□□□□□ -0.79
VTI1A-208	ENST00000494728	ABHD12B	Q7Z5M8	362 aa	Predicted RBP	10.1	□□□□□ -0.79
VTI1A-208	ENST00000494728	DHDDS	Q86SQ9	333 aa		10.1	□□□□□ -0.79
VTI1A-208	ENST00000494728	HIPK1	Q86Z02	1210 aa		10.1	□□□□□ -0.79
VTI1A-208	ENST00000494728	RBM45	Q8IUH3	476 aa	Known RBP	10.1	□□□□□ -0.79
VTI1A-208	ENST00000494728	MAGEE2	Q8TD90	523 aa	Predicted RBP	10.1	□□□□□ -0.79
VTI1A-208	ENST00000494728	CRLF2	Q9HC73	371 aa		10.1	□□□□□ -0.79
VTI1A-208	ENST00000494728	ZNF224	Q9NZL3	707 aa		10.1	□□□□□ -0.79
VTI1A-208	ENST00000494728	PRDM4	Q9UKN5	801 aa		10.1	□□□□□ -0.79
VTI1A-208	ENST00000494728	IGHV2OR16-5	A0A0B4J2B6	119 aa		10.09	□□□□□ -0.79
VTI1A-208	ENST00000494728		A8MV72	311 aa	Predicted RBP	10.09	□□□□□ -0.79
VTI1A-208	ENST00000494728		M0R3G1	203 aa		10.09	□□□□□ -0.79
VTI1A-208	ENST00000494728	SLC43A1	O75387	559 aa		10.09	□□□□□ -0.79
VTI1A-208	ENST00000494728	OR4A8	P0C604	315 aa		10.09	□□□□□ -0.79
VTI1A-208	ENST00000494728	SLC25A16	P16260	332 aa		10.09	□□□□□ -0.79
VTI1A-208	ENST00000494728	PPIB	P23284	216 aa	Known RBP	10.09	□□□□□ -0.79
VTI1A-208	ENST00000494728	SH3BGR	P55822	239 aa	Predicted RBP	10.09	□□□□□ -0.79
VTI1A-208	ENST00000494728	UBE2N	P61088	152 aa	Known RBP	10.09	□□□□□ -0.79
VTI1A-208	ENST00000494728	DUSP7	Q16829	419 aa		10.09	□□□□□ -0.79
VTI1A-208	ENST00000494728	FAM91A1	Q658Y4	838 aa		10.09	□□□□□ -0.79
VTI1A-208	ENST00000494728	ULK3	Q6PHR2	472 aa		10.09	□□□□□ -0.79
VTI1A-208	ENST00000494728	H1FNT	Q75WM6	255 aa	Predicted RBP	10.09	□□□□□ -0.79
VTI1A-208	ENST00000494728	MDP1	Q86V88	176 aa		10.09	□□□□□ -0.79
VTI1A-208	ENST00000494728	KRT73	Q86Y46	540 aa		10.09	□□□□□ -0.79
VTI1A-208	ENST00000494728	ARMC8	Q8IUR7	673 aa		10.09	□□□□□ -0.79
VTI1A-208	ENST00000494728	ZCCHC24	Q8N2G6	241 aa	Known RBP	10.09	□□□□□ -0.79
VTI1A-208	ENST00000494728	ARIH2OS	Q8N7S6	290 aa		10.09	□□□□□ -0.79
VTI1A-208	ENST00000494728	ADPRHL1	Q8NDY3	354 aa		10.09	□□□□□ -0.79
VTI1A-208	ENST00000494728	HIPK4	Q8NE63	616 aa		10.09	□□□□□ -0.79
VTI1A-208	ENST00000494728	DNAJA4	Q8WW22	397 aa	Predicted RBP	10.09	□□□□□ -0.79
VTI1A-208	ENST00000494728	TXNDC15	Q96J42	360 aa		10.09	□□□□□ -0.79
VTI1A-208	ENST00000494728	ARHGDIG	Q99819	225 aa		10.09	□□□□□ -0.79
VTI1A-208	ENST00000494728	SOX7	Q9BT81	388 aa		10.09	□□□□□ -0.79
VTI1A-208	ENST00000494728	IGHV4-61	A0A0C4DH41	118 aa		10.08	□□□□□ -0.8
VTI1A-208	ENST00000494728	LOC102725191	A0A1B0GVB3	256 aa		10.08	□□□□□ -0.8
VTI1A-208	ENST00000494728	SLC35F4	A4IF30	521 aa		10.08	□□□□□ -0.8
VTI1A-208	ENST00000494728	OR6C65	A6NJZ3	312 aa		10.08	□□□□□ -0.8
VTI1A-208	ENST00000494728	OR2T1	O43869	369 aa		10.08	□□□□□ -0.8
VTI1A-208	ENST00000494728	SERPINI2	O75830	405 aa		10.08	□□□□□ -0.8
VTI1A-208	ENST00000494728	F12	P00748	615 aa	Predicted RBP	10.08	□□□□□ -0.8
VTI1A-208	ENST00000494728	HLA-H	P01893	362 aa		10.08	□□□□□ -0.8
VTI1A-208	ENST00000494728	CRYAA	P02489	173 aa		10.08	□□□□□ -0.8
VTI1A-208	ENST00000494728	NQO1	P15559	274 aa	Known RBP	10.08	□□□□□ -0.8
VTI1A-208	ENST00000494728	CD247	P20963	164 aa		10.08	□□□□□ -0.8

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