RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, human

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP4-213	ENST00000488520	GTF2E2	P29084	291 aa	Known RBP	7.78	□□□□□ -1.16
USP4-213	ENST00000488520	NR1H2	P55055	460 aa		7.78	□□□□□ -1.16
USP4-213	ENST00000488520	MS4A2	Q01362	244 aa		7.78	□□□□□ -1.16
USP4-213	ENST00000488520	SELENBP1	Q13228	472 aa		7.78	□□□□□ -1.16
USP4-213	ENST00000488520	ACKR1	Q16570	336 aa		7.78	□□□□□ -1.16
USP4-213	ENST00000488520	TMEM176B	Q3YBM2	270 aa	Predicted RBP	7.78	□□□□□ -1.16
USP4-213	ENST00000488520	SLC25A53	Q5H9E4	307 aa		7.78	□□□□□ -1.16
USP4-213	ENST00000488520	ALG10B	Q5I7T1	473 aa		7.78	□□□□□ -1.16
USP4-213	ENST00000488520	GTF2IRD2B	Q6EKJ0	949 aa		7.78	□□□□□ -1.16
USP4-213	ENST00000488520	LCN8	Q6JVE9	175 aa		7.78	□□□□□ -1.16
USP4-213	ENST00000488520	ZNF613	Q6PF04	617 aa		7.78	□□□□□ -1.16
USP4-213	ENST00000488520	P4HA3	Q7Z4N8	544 aa		7.78	□□□□□ -1.16
USP4-213	ENST00000488520	VTCN1	Q7Z7D3	282 aa		7.78	□□□□□ -1.16
USP4-213	ENST00000488520	GTF2IRD2	Q86UP8	949 aa		7.78	□□□□□ -1.16
USP4-213	ENST00000488520	C10orf53	Q8N6V4	93 aa		7.78	□□□□□ -1.16
USP4-213	ENST00000488520	LSMEM1	Q8N8F7	131 aa		7.78	□□□□□ -1.16
USP4-213	ENST00000488520	FAM71C	Q8NEG0	241 aa		7.78	□□□□□ -1.16
USP4-213	ENST00000488520	GPR32P1	Q8NGA4	272 aa		7.78	□□□□□ -1.16
USP4-213	ENST00000488520	OR6T1	Q8NGN1	323 aa		7.78	□□□□□ -1.16
USP4-213	ENST00000488520	SLC25A43	Q8WUT9	341 aa	Predicted RBP	7.78	□□□□□ -1.16
USP4-213	ENST00000488520	ZHX1-C8orf76	Q96EF9	292 aa		7.78	□□□□□ -1.16
USP4-213	ENST00000488520	HS6ST2	Q96MM7	605 aa		7.78	□□□□□ -1.16
USP4-213	ENST00000488520	EPYC	Q99645	322 aa		7.78	□□□□□ -1.16
USP4-213	ENST00000488520	TM9SF2	Q99805	663 aa		7.78	□□□□□ -1.16
USP4-213	ENST00000488520	SFXN3	Q9BWM7	321 aa		7.78	□□□□□ -1.16
USP4-213	ENST00000488520	TAPBPL	Q9BX59	468 aa		7.78	□□□□□ -1.16
USP4-213	ENST00000488520	C12orf10	Q9HB07	376 aa		7.78	□□□□□ -1.16
USP4-213	ENST00000488520	CTPS2	Q9NRF8	586 aa		7.78	□□□□□ -1.16
USP4-213	ENST00000488520	RIMS3	Q9UJD0	308 aa		7.78	□□□□□ -1.16
USP4-213	ENST00000488520	TMCC3	Q9ULS5	477 aa		7.78	□□□□□ -1.16
USP4-213	ENST00000488520	AURKC	Q9UQB9	309 aa		7.78	□□□□□ -1.16
USP4-213	ENST00000488520	TMED7	Q9Y3B3	224 aa		7.78	□□□□□ -1.16
USP4-213	ENST00000488520	TESMIN	Q9Y4I5	508 aa		7.78	□□□□□ -1.16
USP4-213	ENST00000488520	CAD	P27708	2225 aa		7.78	□□□□□ -1.16
USP4-213	ENST00000488520	C7orf72	A4D263	438 aa		7.77	□□□□□ -1.17
USP4-213	ENST00000488520		A8MVM7	634 aa		7.77	□□□□□ -1.17
USP4-213	ENST00000488520	DEFB108A	A8MXU0	73 aa		7.77	□□□□□ -1.17
USP4-213	ENST00000488520	SEC14L5	O43304	696 aa		7.77	□□□□□ -1.17
USP4-213	ENST00000488520	TPST2	O60704	377 aa		7.77	□□□□□ -1.17
USP4-213	ENST00000488520	OR5F1	O95221	314 aa		7.77	□□□□□ -1.17
USP4-213	ENST00000488520	OPN1LW	P04000	364 aa		7.77	□□□□□ -1.17
USP4-213	ENST00000488520	HIST1H2AB	P04908	130 aa		7.77	□□□□□ -1.17
USP4-213	ENST00000488520	GPI	P06744	558 aa		7.77	□□□□□ -1.17
USP4-213	ENST00000488520	THRB	P10828	461 aa		7.77	□□□□□ -1.17
USP4-213	ENST00000488520	CPN1	P15169	458 aa		7.77	□□□□□ -1.17
USP4-213	ENST00000488520	NQO1	P15559	274 aa	Known RBP	7.77	□□□□□ -1.17
USP4-213	ENST00000488520	RHCE	P18577	417 aa		7.77	□□□□□ -1.17
USP4-213	ENST00000488520	TNFRSF1B	P20333	461 aa		7.77	□□□□□ -1.17
USP4-213	ENST00000488520	FPR1	P21462	350 aa		7.77	□□□□□ -1.17
USP4-213	ENST00000488520	SFTPD	P35247	375 aa		7.77	□□□□□ -1.17
USP4-213	ENST00000488520	YAP1	P46937	504 aa	Known RBP	7.77	□□□□□ -1.17
USP4-213	ENST00000488520	PTH2R	P49190	550 aa		7.77	□□□□□ -1.17
USP4-213	ENST00000488520	ARHGDIA	P52565	204 aa		7.77	□□□□□ -1.17
USP4-213	ENST00000488520	GFRA1	P56159	465 aa		7.77	□□□□□ -1.17
USP4-213	ENST00000488520	CSNK2A1	P68400	391 aa	Predicted RBP	7.77	□□□□□ -1.17
USP4-213	ENST00000488520	FOXF1	Q12946	379 aa		7.77	□□□□□ -1.17
USP4-213	ENST00000488520	TAF11	Q15544	211 aa		7.77	□□□□□ -1.17
USP4-213	ENST00000488520	HBM	Q6B0K9	141 aa		7.77	□□□□□ -1.17
USP4-213	ENST00000488520	C3orf33	Q6P1S2	294 aa		7.77	□□□□□ -1.17
USP4-213	ENST00000488520	VWA1	Q6PCB0	445 aa		7.77	□□□□□ -1.17
USP4-213	ENST00000488520	C5orf46	Q6UWT4	87 aa		7.77	□□□□□ -1.17
USP4-213	ENST00000488520	PRSS57	Q6UWY2	283 aa		7.77	□□□□□ -1.17
USP4-213	ENST00000488520	ESPNL	Q6ZVH7	1005 aa		7.77	□□□□□ -1.17
USP4-213	ENST00000488520	ASRGL1	Q7L266	308 aa		7.77	□□□□□ -1.17
USP4-213	ENST00000488520	HIST3H2A	Q7L7L0	130 aa		7.77	□□□□□ -1.17
USP4-213	ENST00000488520	ADGRG3	Q86Y34	549 aa		7.77	□□□□□ -1.17
USP4-213	ENST00000488520	RBM45	Q8IUH3	476 aa	Known RBP	7.77	□□□□□ -1.17
USP4-213	ENST00000488520	ZDHHC21	Q8IVQ6	265 aa		7.77	□□□□□ -1.17
USP4-213	ENST00000488520	CNEP1R1	Q8N9A8	125 aa		7.77	□□□□□ -1.17
USP4-213	ENST00000488520	MAPK1IP1L	Q8NDC0	245 aa		7.77	□□□□□ -1.17
USP4-213	ENST00000488520	ADAMTS16	Q8TE57	1224 aa		7.77	□□□□□ -1.17
USP4-213	ENST00000488520	HIST1H2AC	Q93077	130 aa		7.77	□□□□□ -1.17
USP4-213	ENST00000488520	SLC41A3	Q96GZ6	507 aa		7.77	□□□□□ -1.17
USP4-213	ENST00000488520	MPP4	Q96JB8	637 aa		7.77	□□□□□ -1.17
USP4-213	ENST00000488520	OR5B2	Q96R09	309 aa		7.77	□□□□□ -1.17
USP4-213	ENST00000488520	NAA11	Q9BSU3	229 aa	Predicted RBP	7.77	□□□□□ -1.17
USP4-213	ENST00000488520	MED18	Q9BUE0	208 aa		7.77	□□□□□ -1.17
USP4-213	ENST00000488520	AMBRA1	Q9C0C7	1298 aa		7.77	□□□□□ -1.17
USP4-213	ENST00000488520	PIGM	Q9H3S5	423 aa		7.77	□□□□□ -1.17
USP4-213	ENST00000488520	MAGIX	Q9H6Y5	334 aa		7.77	□□□□□ -1.17
USP4-213	ENST00000488520	TMEM185B	Q9H7F4	350 aa		7.77	□□□□□ -1.17
USP4-213	ENST00000488520	KRCC1	Q9NPI7	259 aa	Predicted RBP	7.77	□□□□□ -1.17
USP4-213	ENST00000488520	CHRNA9	Q9UGM1	479 aa		7.77	□□□□□ -1.17
USP4-213	ENST00000488520	SLC7A8	Q9UHI5	535 aa		7.77	□□□□□ -1.17
USP4-213	ENST00000488520	OSGIN1	Q9UJX0	560 aa		7.77	□□□□□ -1.17
USP4-213	ENST00000488520	MCTS1	Q9ULC4	181 aa	Known RBP	7.77	□□□□□ -1.17
USP4-213	ENST00000488520	SLC7A7	Q9UM01	511 aa		7.77	□□□□□ -1.17
USP4-213	ENST00000488520	CHST2	Q9Y4C5	530 aa		7.77	□□□□□ -1.17
USP4-213	ENST00000488520	MALRD1	Q5VYJ5	2156 aa		7.77	□□□□□ -1.17
USP4-213	ENST00000488520		A0A1B0GWA3	101 aa		7.76	□□□□□ -1.17
USP4-213	ENST00000488520		A0A1W2PNV4	684 aa		7.76	□□□□□ -1.17
USP4-213	ENST00000488520	DHRS12	A0PJE2	317 aa		7.76	□□□□□ -1.17
USP4-213	ENST00000488520	RNF212B	A8MTL3	300 aa		7.76	□□□□□ -1.17
USP4-213	ENST00000488520	hCG_2039718	K7EN88	272 aa		7.76	□□□□□ -1.17
USP4-213	ENST00000488520	SULT2B1	O00204	365 aa		7.76	□□□□□ -1.17
USP4-213	ENST00000488520	ACOT8	O14734	319 aa		7.76	□□□□□ -1.17
USP4-213	ENST00000488520	ZNF208	O43345	1280 aa		7.76	□□□□□ -1.17
USP4-213	ENST00000488520	CHP2	O43745	196 aa		7.76	□□□□□ -1.17
USP4-213	ENST00000488520	OR2T1	O43869	369 aa		7.76	□□□□□ -1.17
USP4-213	ENST00000488520	BCAS1	O75363	584 aa	Predicted RBP	7.76	□□□□□ -1.17

Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms