RNA–Protein interactions for RNA: ENST00000483212.1

USP4-210, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 727 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-210ENST00000483212 HIST1H1CP16403 213 aaKnown RBP7.37□□□□□ -1.23
USP4-210ENST00000483212 MLLT10P55197 1068 aa7.37□□□□□ -1.23
USP4-210ENST00000483212 CTXN1P60606 82 aa7.37□□□□□ -1.23
USP4-210ENST00000483212 RAC3P60763 192 aa7.37□□□□□ -1.23
USP4-210ENST00000483212 CDC42P60953 191 aa7.37□□□□□ -1.23
USP4-210ENST00000483212 PUDPQ08623 228 aa7.37□□□□□ -1.23
USP4-210ENST00000483212 POU4F3Q15319 338 aa7.37□□□□□ -1.23
USP4-210ENST00000483212 OCLNQ16625 522 aa7.37□□□□□ -1.23
USP4-210ENST00000483212 SMN1Q16637 294 aaKnown RBP7.37□□□□□ -1.23
USP4-210ENST00000483212 MESTQ5EB52 335 aa7.37□□□□□ -1.23
USP4-210ENST00000483212 C6orf141Q5SZD1 244 aa7.37□□□□□ -1.23
USP4-210ENST00000483212 ARMC4Q5T2S8 1044 aa7.37□□□□□ -1.23
USP4-210ENST00000483212 DMRTA1Q5VZB9 504 aa7.37□□□□□ -1.23
USP4-210ENST00000483212 HBMQ6B0K9 141 aa7.37□□□□□ -1.23
USP4-210ENST00000483212 ABLIM2Q6H8Q1 611 aa7.37□□□□□ -1.23
USP4-210ENST00000483212 KRT80Q6KB66 452 aa7.37□□□□□ -1.23
USP4-210ENST00000483212 ARHGAP11AQ6P4F7 1023 aa7.37□□□□□ -1.23
USP4-210ENST00000483212 HIST3H2AQ7L7L0 130 aa7.37□□□□□ -1.23
USP4-210ENST00000483212 BCDIN3DQ7Z5W3 292 aaKnown RBP7.37□□□□□ -1.23
USP4-210ENST00000483212 FGD2Q7Z6J4 655 aa7.37□□□□□ -1.23
USP4-210ENST00000483212 KDM8Q8N371 416 aa7.37□□□□□ -1.23
USP4-210ENST00000483212 TCEANCQ8N8B7 351 aa7.37□□□□□ -1.23
USP4-210ENST00000483212 OR10D3Q8NH80 312 aa7.37□□□□□ -1.23
USP4-210ENST00000483212 ZNF519Q8TB69 540 aa7.37□□□□□ -1.23
USP4-210ENST00000483212 TMEM163Q8TC26 289 aa7.37□□□□□ -1.23
USP4-210ENST00000483212 HDAC2Q92769 488 aaKnown RBP7.37□□□□□ -1.23
USP4-210ENST00000483212 HIST1H2ACQ93077 130 aa7.37□□□□□ -1.23
USP4-210ENST00000483212 ABTB1Q969K4 478 aaPredicted RBP7.37□□□□□ -1.23
USP4-210ENST00000483212 WDYHV1Q96HA8 205 aa7.37□□□□□ -1.23
USP4-210ENST00000483212 ZNF845Q96IR2 970 aaPredicted RBP7.37□□□□□ -1.23
USP4-210ENST00000483212 Q96M85 177 aa7.37□□□□□ -1.23
USP4-210ENST00000483212 ERMAPQ96PL5 475 aaPredicted RBP7.37□□□□□ -1.23
USP4-210ENST00000483212 NR1H4Q96RI1 486 aaPredicted RBP7.37□□□□□ -1.23
USP4-210ENST00000483212 UCN2Q96RP3 112 aa7.37□□□□□ -1.23
USP4-210ENST00000483212 IL4I1Q96RQ9 567 aa7.37□□□□□ -1.23
USP4-210ENST00000483212 TIMP4Q99727 224 aa7.37□□□□□ -1.23
USP4-210ENST00000483212 HCAR1Q9BXC0 346 aa7.37□□□□□ -1.23
USP4-210ENST00000483212 PRDM14Q9GZV8 571 aa7.37□□□□□ -1.23
USP4-210ENST00000483212 TSPAN10Q9H1Z9 355 aaPredicted RBP7.37□□□□□ -1.23
USP4-210ENST00000483212 FN3KQ9H479 309 aa7.37□□□□□ -1.23
USP4-210ENST00000483212 HINT3Q9NQE9 182 aaKnown RBP7.37□□□□□ -1.23
USP4-210ENST00000483212 ZNF71Q9NQZ8 489 aaPredicted RBP7.37□□□□□ -1.23
USP4-210ENST00000483212 INIPQ9NRY2 104 aa7.37□□□□□ -1.23
USP4-210ENST00000483212 LUZP4Q9P127 313 aa7.37□□□□□ -1.23
USP4-210ENST00000483212 ING1Q9UK53 422 aaPredicted RBP7.37□□□□□ -1.23
USP4-210ENST00000483212 ZNF346Q9UL40 294 aaKnown RBP7.37□□□□□ -1.23
USP4-210ENST00000483212 ZMIZ1Q9ULJ6 1067 aa7.37□□□□□ -1.23
USP4-210ENST00000483212 GPR52Q9Y2T5 361 aa7.37□□□□□ -1.23
USP4-210ENST00000483212 DSPP15924 2871 aaKnown RBP7.36□□□□□ -1.23
USP4-210ENST00000483212 IGHV3-15A0A0B4J1V0 119 aa7.36□□□□□ -1.23
USP4-210ENST00000483212 ZNF716A6NP11 495 aa7.36□□□□□ -1.23
USP4-210ENST00000483212 NPIPA5E9PKD4 350 aa7.36□□□□□ -1.23
USP4-210ENST00000483212 C11orf98E9PRG8 122 aa7.36□□□□□ -1.23
USP4-210ENST00000483212 SLC1A7O00341 560 aa7.36□□□□□ -1.23
USP4-210ENST00000483212 TLX2O43763 284 aaPredicted RBP7.36□□□□□ -1.23
USP4-210ENST00000483212 MPZL2O60487 215 aa7.36□□□□□ -1.23
USP4-210ENST00000483212 EIF1BO60739 113 aaKnown RBP7.36□□□□□ -1.23
USP4-210ENST00000483212 ENTPD6O75354 484 aa7.36□□□□□ -1.23
USP4-210ENST00000483212 LYNP07948 512 aa7.36□□□□□ -1.23
USP4-210ENST00000483212 ENPP1P22413 925 aa7.36□□□□□ -1.23
USP4-210ENST00000483212 SLC2A5P22732 501 aa7.36□□□□□ -1.23
USP4-210ENST00000483212 CRHBPP24387 322 aa7.36□□□□□ -1.23
USP4-210ENST00000483212 GTF2E2P29084 291 aaKnown RBP7.36□□□□□ -1.23
USP4-210ENST00000483212 NOS3P29474 1203 aa7.36□□□□□ -1.23
USP4-210ENST00000483212 SDHAP31040 664 aa7.36□□□□□ -1.23
USP4-210ENST00000483212 FMO3P31513 532 aa7.36□□□□□ -1.23
USP4-210ENST00000483212 RPL4P36578 427 aaKnown RBP7.36□□□□□ -1.23
USP4-210ENST00000483212 CDKN2AP42771 156 aaKnown RBP7.36□□□□□ -1.23
USP4-210ENST00000483212 CHN2P52757 468 aa7.36□□□□□ -1.23
USP4-210ENST00000483212 CXCR4P61073 352 aa7.36□□□□□ -1.23
USP4-210ENST00000483212 RPL27P61353 136 aaKnown RBP7.36□□□□□ -1.23
USP4-210ENST00000483212 CSNK2A1P68400 391 aaPredicted RBP7.36□□□□□ -1.23
USP4-210ENST00000483212 KHDRBS1Q07666 443 aaKnown RBP eCLIP7.36□□□□□ -1.23
USP4-210ENST00000483212 CRMP1Q14194 572 aa7.36□□□□□ -1.23
USP4-210ENST00000483212 SLC17A1Q14916 467 aa7.36□□□□□ -1.23
USP4-210ENST00000483212 SNAPC1Q16533 368 aa7.36□□□□□ -1.23
USP4-210ENST00000483212 ACKR1Q16570 336 aa7.36□□□□□ -1.23
USP4-210ENST00000483212 C3AR1Q16581 482 aa7.36□□□□□ -1.23
USP4-210ENST00000483212 KCTD21Q4G0X4 260 aa7.36□□□□□ -1.23
USP4-210ENST00000483212 EMC4Q5J8M3 183 aa7.36□□□□□ -1.23
USP4-210ENST00000483212 SLC35F1Q5T1Q4 408 aa7.36□□□□□ -1.23
USP4-210ENST00000483212 GPR139Q6DWJ6 353 aa7.36□□□□□ -1.23
USP4-210ENST00000483212 PCSK4Q6UW60 755 aa7.36□□□□□ -1.23
USP4-210ENST00000483212 CASP12Q6UXS9 341 aa7.36□□□□□ -1.23
USP4-210ENST00000483212 PTCHD4Q6ZW05 846 aa7.36□□□□□ -1.23
USP4-210ENST00000483212 PXKQ7Z7A4 578 aa7.36□□□□□ -1.23
USP4-210ENST00000483212 ADGRE4PQ86SQ3 457 aa7.36□□□□□ -1.23
USP4-210ENST00000483212 UBQLNLQ8IYU4 475 aa7.36□□□□□ -1.23
USP4-210ENST00000483212 ARIH2OSQ8N7S6 290 aa7.36□□□□□ -1.23
USP4-210ENST00000483212 SLC37A3Q8NCC5 494 aa7.36□□□□□ -1.23
USP4-210ENST00000483212 LSM14AQ8ND56 463 aaKnown RBP7.36□□□□□ -1.23
USP4-210ENST00000483212 NPEPL1Q8NDH3 523 aa7.36□□□□□ -1.23
USP4-210ENST00000483212 OR52E2Q8NGJ4 325 aa7.36□□□□□ -1.23
USP4-210ENST00000483212 ZPLD1Q8TCW7 415 aa7.36□□□□□ -1.23
USP4-210ENST00000483212 ASB10Q8WXI3 467 aa7.36□□□□□ -1.23
USP4-210ENST00000483212 PTP4A1Q93096 173 aa7.36□□□□□ -1.23
USP4-210ENST00000483212 KISS1RQ969F8 398 aaPredicted RBP7.36□□□□□ -1.23
USP4-210ENST00000483212 RASD2Q96D21 266 aa7.36□□□□□ -1.23
USP4-210ENST00000483212 ZNF582Q96NG8 517 aaPredicted RBP7.36□□□□□ -1.23
USP4-210ENST00000483212 SLC38A2Q96QD8 506 aa7.36□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms