RNA–Protein interactions for RNA: ENST00000478214.1

HMGA1-206, Transcript of high mobility group AT-hook 1, humanhuman

TSL 1 (best)

Gene HMGA1, Length 716 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-206ENST00000478214 ALKBH3Q96Q83 286 aaPredicted RBP13.7□□□□□ -0.22
HMGA1-206ENST00000478214 SLC19A3Q9BZV2 496 aa13.7□□□□□ -0.22
HMGA1-206ENST00000478214 AMBRA1Q9C0C7 1298 aa13.7□□□□□ -0.22
HMGA1-206ENST00000478214 UBTD1Q9HAC8 227 aa13.7□□□□□ -0.22
HMGA1-206ENST00000478214 NGBQ9NPG2 151 aa13.7□□□□□ -0.22
HMGA1-206ENST00000478214 NPAP1Q9NZP6 1156 aa13.7□□□□□ -0.22
HMGA1-206ENST00000478214 A4GNTQ9UNA3 340 aa13.7□□□□□ -0.22
HMGA1-206ENST00000478214 DPRXA6NFQ7 191 aa13.69□□□□□ -0.22
HMGA1-206ENST00000478214 OR6C65A6NJZ3 312 aa13.69□□□□□ -0.22
HMGA1-206ENST00000478214 SERPINI2O75830 405 aa13.69□□□□□ -0.22
HMGA1-206ENST00000478214 IFNW1P05000 195 aa13.69□□□□□ -0.22
HMGA1-206ENST00000478214 ADORA3P0DMS8 318 aa13.69□□□□□ -0.22
HMGA1-206ENST00000478214 CDH2P19022 906 aaPredicted RBP13.69□□□□□ -0.22
HMGA1-206ENST00000478214 FUT4P22083 530 aa13.69□□□□□ -0.22
HMGA1-206ENST00000478214 ART1P52961 327 aa13.69□□□□□ -0.22
HMGA1-206ENST00000478214 POU3F1Q03052 451 aaPredicted RBP13.69□□□□□ -0.22
HMGA1-206ENST00000478214 TGFBR3Q03167 851 aa13.69□□□□□ -0.22
HMGA1-206ENST00000478214 KRT72Q14CN4 511 aa13.69□□□□□ -0.22
HMGA1-206ENST00000478214 IFI44LQ53G44 452 aa13.69□□□□□ -0.22
HMGA1-206ENST00000478214 NCMAPQ5T1S8 102 aa13.69□□□□□ -0.22
HMGA1-206ENST00000478214 GLYATQ6IB77 296 aa13.69□□□□□ -0.22
HMGA1-206ENST00000478214 FKBP9P1Q75LS8 142 aa13.69□□□□□ -0.22
HMGA1-206ENST00000478214 SLC46A3Q7Z3Q1 461 aa13.69□□□□□ -0.22
HMGA1-206ENST00000478214 LURAP1LQ8IV03 231 aa13.69□□□□□ -0.22
HMGA1-206ENST00000478214 PGAM4Q8N0Y7 254 aa13.69□□□□□ -0.22
HMGA1-206ENST00000478214 CCDC197Q8NCU1 140 aa13.69□□□□□ -0.22
HMGA1-206ENST00000478214 RBM15BQ8NDT2 890 aaKnown RBP13.69□□□□□ -0.22
HMGA1-206ENST00000478214 TMEM239Q8WW34 195 aa13.69□□□□□ -0.22
HMGA1-206ENST00000478214 GEMIN6Q8WXD5 167 aaKnown RBP13.69□□□□□ -0.22
HMGA1-206ENST00000478214 TXNDC15Q96J42 360 aa13.69□□□□□ -0.22
HMGA1-206ENST00000478214 PRRC1Q96M27 445 aa13.69□□□□□ -0.22
HMGA1-206ENST00000478214 OR2M2Q96R28 347 aa13.69□□□□□ -0.22
HMGA1-206ENST00000478214 TMEM204Q9BSN7 226 aa13.69□□□□□ -0.22
HMGA1-206ENST00000478214 EMC6Q9BV81 110 aa13.69□□□□□ -0.22
HMGA1-206ENST00000478214 FKRPQ9H9S5 495 aa13.69□□□□□ -0.22
HMGA1-206ENST00000478214 NANSQ9NR45 359 aa13.69□□□□□ -0.22
HMGA1-206ENST00000478214 MED29Q9NX70 200 aa13.69□□□□□ -0.22
HMGA1-206ENST00000478214 ADAM21Q9UKJ8 722 aa13.69□□□□□ -0.22
HMGA1-206ENST00000478214 NOX1Q9Y5S8 564 aa13.69□□□□□ -0.22
HMGA1-206ENST00000478214 SLC25A15Q9Y619 301 aa13.69□□□□□ -0.22
HMGA1-206ENST00000478214 ZNF587BE7ETH6 402 aa13.68□□□□□ -0.22
HMGA1-206ENST00000478214 C11orf98E9PRG8 122 aa13.68□□□□□ -0.22
HMGA1-206ENST00000478214 J3KTA2 159 aa13.68□□□□□ -0.22
HMGA1-206ENST00000478214 CLOCKO15516 846 aa13.68□□□□□ -0.22
HMGA1-206ENST00000478214 SLC43A1O75387 559 aa13.68□□□□□ -0.22
HMGA1-206ENST00000478214 MT-ND1P03886 318 aa13.68□□□□□ -0.22
HMGA1-206ENST00000478214 THRBP10828 461 aa13.68□□□□□ -0.22
HMGA1-206ENST00000478214 CD53P19397 219 aa13.68□□□□□ -0.22
HMGA1-206ENST00000478214 TCN1P20061 433 aaPredicted RBP13.68□□□□□ -0.22
HMGA1-206ENST00000478214 AHCYP23526 432 aa13.68□□□□□ -0.22
HMGA1-206ENST00000478214 MSX2P35548 267 aaPredicted RBP13.68□□□□□ -0.22
HMGA1-206ENST00000478214 RBM34P42696 430 aaKnown RBP13.68□□□□□ -0.22
HMGA1-206ENST00000478214 BSPH1Q075Z2 132 aa13.68□□□□□ -0.22
HMGA1-206ENST00000478214 ACKR1Q16570 336 aa13.68□□□□□ -0.22
HMGA1-206ENST00000478214 ABHD12BQ7Z5M8 362 aaPredicted RBP13.68□□□□□ -0.22
HMGA1-206ENST00000478214 PXKQ7Z7A4 578 aa13.68□□□□□ -0.22
HMGA1-206ENST00000478214 WDFY1Q8IWB7 410 aa13.68□□□□□ -0.22
HMGA1-206ENST00000478214 TMEM123Q8N131 208 aa13.68□□□□□ -0.22
HMGA1-206ENST00000478214 WDR31Q8NA23 367 aa13.68□□□□□ -0.22
HMGA1-206ENST00000478214 C1orf162Q8NEQ5 155 aaPredicted RBP13.68□□□□□ -0.22
HMGA1-206ENST00000478214 CDRT15Q96T59 188 aa13.68□□□□□ -0.22
HMGA1-206ENST00000478214 LINC00470Q9BZP3 86 aa13.68□□□□□ -0.22
HMGA1-206ENST00000478214 ESRP2Q9H6T0 727 aaKnown RBP13.68□□□□□ -0.22
HMGA1-206ENST00000478214 SLC17A5Q9NRA2 495 aa13.68□□□□□ -0.22
HMGA1-206ENST00000478214 TAS2R5Q9NYW4 299 aa13.68□□□□□ -0.22
HMGA1-206ENST00000478214 RHCGQ9UBD6 479 aa13.68□□□□□ -0.22
HMGA1-206ENST00000478214 ZNF229Q9UJW7 825 aa13.68□□□□□ -0.22
HMGA1-206ENST00000478214 RNF115Q9Y4L5 304 aa13.68□□□□□ -0.22
HMGA1-206ENST00000478214 ALPK2Q86TB3 2170 aa13.67□□□□□ -0.22
HMGA1-206ENST00000478214 SLC35F4A4IF30 521 aa13.67□□□□□ -0.22
HMGA1-206ENST00000478214 FFAR1O14842 300 aa13.67□□□□□ -0.22
HMGA1-206ENST00000478214 AKAP8O43823 692 aaKnown RBP13.67□□□□□ -0.22
HMGA1-206ENST00000478214 OR7A10O76100 309 aa13.67□□□□□ -0.22
HMGA1-206ENST00000478214 OR6A2O95222 327 aa13.67□□□□□ -0.22
HMGA1-206ENST00000478214 CD3EP07766 207 aa13.67□□□□□ -0.22
HMGA1-206ENST00000478214 ASAH2BP0C7U1 165 aa13.67□□□□□ -0.22
HMGA1-206ENST00000478214 UMPSP11172 480 aa13.67□□□□□ -0.22
HMGA1-206ENST00000478214 ZNF83P51522 516 aa13.67□□□□□ -0.22
HMGA1-206ENST00000478214 LSM11P83369 360 aaKnown RBP eCLIP13.67□□□□□ -0.22
HMGA1-206ENST00000478214 MXRA7P84157 204 aa13.67□□□□□ -0.22
HMGA1-206ENST00000478214 ROR2Q01974 943 aaKnown RBP13.67□□□□□ -0.22
HMGA1-206ENST00000478214 ST3GAL3Q11203 375 aa13.67□□□□□ -0.22
HMGA1-206ENST00000478214 HIKESHIQ53FT3 197 aa13.67□□□□□ -0.22
HMGA1-206ENST00000478214 SAMD4BQ5PRF9 694 aaKnown RBP13.67□□□□□ -0.22
HMGA1-206ENST00000478214 CARD17Q5XLA6 110 aa13.67□□□□□ -0.22
HMGA1-206ENST00000478214 HMBOX1Q6NT76 420 aa13.67□□□□□ -0.22
HMGA1-206ENST00000478214 C16orf89Q6UX73 402 aa13.67□□□□□ -0.22
HMGA1-206ENST00000478214 SSX8Q7RTT4 187 aa13.67□□□□□ -0.22
HMGA1-206ENST00000478214 TSEN54Q7Z6J9 526 aaKnown RBP13.67□□□□□ -0.22
HMGA1-206ENST00000478214 DEFB107AQ8IZN7 70 aa13.67□□□□□ -0.22
HMGA1-206ENST00000478214 PIK3C3Q8NEB9 887 aa13.67□□□□□ -0.22
HMGA1-206ENST00000478214 MBD6Q96DN6 1003 aa13.67□□□□□ -0.22
HMGA1-206ENST00000478214 SGTBQ96EQ0 304 aa13.67□□□□□ -0.22
HMGA1-206ENST00000478214 HS6ST2Q96MM7 605 aa13.67□□□□□ -0.22
HMGA1-206ENST00000478214 FOXC2Q99958 501 aa13.67□□□□□ -0.22
HMGA1-206ENST00000478214 C1QTNF6Q9BXI9 259 aa13.67□□□□□ -0.22
HMGA1-206ENST00000478214 MAN2C1Q9NTJ4 1040 aa13.67□□□□□ -0.22
HMGA1-206ENST00000478214 C20orf141Q9NUB4 165 aa13.67□□□□□ -0.22
HMGA1-206ENST00000478214 CD300AQ9UGN4 299 aa13.67□□□□□ -0.22
HMGA1-206ENST00000478214 RPS6KA6Q9UK32 745 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms