RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 USF1P22415 310 aaPredicted RBP15.27■□□□□ 0.04
COL7A1-206ENST00000466591 AHCYP23526 432 aa15.27■□□□□ 0.04
COL7A1-206ENST00000466591 P2RY4P51582 365 aa15.27■□□□□ 0.04
COL7A1-206ENST00000466591 NAAAQ02083 359 aa15.27■□□□□ 0.04
COL7A1-206ENST00000466591 EGR4Q05215 589 aa15.27■□□□□ 0.04
COL7A1-206ENST00000466591 LOXL1Q08397 574 aaPredicted RBP15.27■□□□□ 0.04
COL7A1-206ENST00000466591 PMS2P3Q13401 168 aa15.27■□□□□ 0.04
COL7A1-206ENST00000466591 CEACAM16Q2WEN9 425 aa15.27■□□□□ 0.04
COL7A1-206ENST00000466591 PAGE3Q5JUK9 113 aa15.27■□□□□ 0.04
COL7A1-206ENST00000466591 C6orf52Q5T4I8 152 aa15.27■□□□□ 0.04
COL7A1-206ENST00000466591 DHRS4L2Q6PKH6 230 aa15.27■□□□□ 0.04
COL7A1-206ENST00000466591 C6orf89Q6UWU4 347 aa15.27■□□□□ 0.04
COL7A1-206ENST00000466591 LSMEM1Q8N8F7 131 aa15.27■□□□□ 0.04
COL7A1-206ENST00000466591 OR6N1Q8NGY5 312 aa15.27■□□□□ 0.04
COL7A1-206ENST00000466591 MAGEE2Q8TD90 523 aaPredicted RBP15.27■□□□□ 0.04
COL7A1-206ENST00000466591 MDFIQ99750 246 aa15.27■□□□□ 0.04
COL7A1-206ENST00000466591 PTDSS2Q9BVG9 487 aa15.27■□□□□ 0.04
COL7A1-206ENST00000466591 BEX2Q9BXY8 128 aa15.27■□□□□ 0.04
COL7A1-206ENST00000466591 RAB1BQ9H0U4 201 aa15.27■□□□□ 0.04
COL7A1-206ENST00000466591 DYNLRB1Q9NP97 96 aa15.27■□□□□ 0.04
COL7A1-206ENST00000466591 SLAMF8Q9P0V8 285 aa15.27■□□□□ 0.04
COL7A1-206ENST00000466591 SEC14L4Q9UDX3 406 aa15.27■□□□□ 0.04
COL7A1-206ENST00000466591 LEF1Q9UJU2 399 aaPredicted RBP15.27■□□□□ 0.04
COL7A1-206ENST00000466591 FBXO9Q9UK97 447 aaPredicted RBP15.27■□□□□ 0.04
COL7A1-206ENST00000466591 CDC42EP3Q9UKI2 254 aa15.27■□□□□ 0.04
COL7A1-206ENST00000466591 ADAM21Q9UKJ8 722 aa15.27■□□□□ 0.04
COL7A1-206ENST00000466591 POFUT2Q9Y2G5 429 aa15.27■□□□□ 0.04
COL7A1-206ENST00000466591 CORINQ9Y5Q5 1042 aa15.27■□□□□ 0.04
COL7A1-206ENST00000466591 TLN2Q9Y4G6 2542 aa15.26■□□□□ 0.03
COL7A1-206ENST00000466591 LY6HO94772 140 aa15.26■□□□□ 0.03
COL7A1-206ENST00000466591 CECR9P0C854 216 aa15.26■□□□□ 0.03
COL7A1-206ENST00000466591 HTR2AP28223 471 aa15.26■□□□□ 0.03
COL7A1-206ENST00000466591 ARR3P36575 388 aa15.26■□□□□ 0.03
COL7A1-206ENST00000466591 MRPL19P49406 292 aaKnown RBP15.26■□□□□ 0.03
COL7A1-206ENST00000466591 ATP4BP51164 291 aa15.26■□□□□ 0.03
COL7A1-206ENST00000466591 POU3F1Q03052 451 aaPredicted RBP15.26■□□□□ 0.03
COL7A1-206ENST00000466591 OR1Q1Q15612 314 aa15.26■□□□□ 0.03
COL7A1-206ENST00000466591 DHDDSQ86SQ9 333 aa15.26■□□□□ 0.03
COL7A1-206ENST00000466591 HIPK1Q86Z02 1210 aa15.26■□□□□ 0.03
COL7A1-206ENST00000466591 FUNDC1Q8IVP5 155 aa15.26■□□□□ 0.03
COL7A1-206ENST00000466591 SMYD1Q8NB12 490 aa15.26■□□□□ 0.03
COL7A1-206ENST00000466591 C11orf65Q8NCR3 313 aa15.26■□□□□ 0.03
COL7A1-206ENST00000466591 C10orf105Q8TEF2 133 aa15.26■□□□□ 0.03
COL7A1-206ENST00000466591 NANOS1Q8WY41 292 aaKnown RBP15.26■□□□□ 0.03
COL7A1-206ENST00000466591 THOC1Q96FV9 657 aaKnown RBP15.26■□□□□ 0.03
COL7A1-206ENST00000466591 PRR14Q9BWN1 585 aa15.26■□□□□ 0.03
COL7A1-206ENST00000466591 TMEM38AQ9H6F2 299 aa15.26■□□□□ 0.03
COL7A1-206ENST00000466591 EVA1AQ9H8M9 152 aa15.26■□□□□ 0.03
COL7A1-206ENST00000466591 GPR35Q9HC97 309 aa15.26■□□□□ 0.03
COL7A1-206ENST00000466591 USP22Q9UPT9 525 aa15.26■□□□□ 0.03
COL7A1-206ENST00000466591 NDUFAF1Q9Y375 327 aa15.26■□□□□ 0.03
COL7A1-206ENST00000466591 NOX1Q9Y5S8 564 aa15.26■□□□□ 0.03
COL7A1-206ENST00000466591 HEATR1Q9H583 2144 aaKnown RBP15.25■□□□□ 0.03
COL7A1-206ENST00000466591 RNF212BA8MTL3 300 aa15.25■□□□□ 0.03
COL7A1-206ENST00000466591 NDUFS8O00217 210 aa15.25■□□□□ 0.03
COL7A1-206ENST00000466591 SEC14L2O76054 403 aa15.25■□□□□ 0.03
COL7A1-206ENST00000466591 CD79AP11912 226 aa15.25■□□□□ 0.03
COL7A1-206ENST00000466591 LSP1P33241 339 aa15.25■□□□□ 0.03
COL7A1-206ENST00000466591 LSM11P83369 360 aaKnown RBP eCLIP15.25■□□□□ 0.037e-7■■■■■ 30.5
COL7A1-206ENST00000466591 GLIPR1L2Q4G1C9 344 aa15.25■□□□□ 0.03
COL7A1-206ENST00000466591 LINGO2Q7L985 606 aa15.25■□□□□ 0.03
COL7A1-206ENST00000466591 CXXC5Q7LFL8 322 aaKnown RBP15.25■□□□□ 0.03
COL7A1-206ENST00000466591 CCDC36Q8IYA8 594 aa15.25■□□□□ 0.03
COL7A1-206ENST00000466591 ANKK1Q8NFD2 765 aa15.25■□□□□ 0.03
COL7A1-206ENST00000466591 ANKRD27Q96NW4 1050 aa15.25■□□□□ 0.03
COL7A1-206ENST00000466591 REPIN1Q9BWE0 567 aaKnown RBP15.25■□□□□ 0.03
COL7A1-206ENST00000466591 SHARPINQ9H0F6 387 aa15.25■□□□□ 0.03
COL7A1-206ENST00000466591 MYOZ1Q9NP98 299 aaPredicted RBP15.25■□□□□ 0.03
COL7A1-206ENST00000466591 ARGLU1Q9NWB6 273 aaPredicted RBP15.25■□□□□ 0.03
COL7A1-206ENST00000466591 KLHL14Q9P2G3 628 aa15.25■□□□□ 0.03
COL7A1-206ENST00000466591 SPEF1Q9Y4P9 236 aa15.25■□□□□ 0.03
COL7A1-206ENST00000466591 CHD3Q12873 2000 aaKnown RBP15.25■□□□□ 0.03
COL7A1-206ENST00000466591 A0A087WUJ7 227 aa15.24■□□□□ 0.03
COL7A1-206ENST00000466591 ZNF99A8MXY4 864 aaPredicted RBP15.24■□□□□ 0.03
COL7A1-206ENST00000466591 TPST1O60507 370 aa15.24■□□□□ 0.03
COL7A1-206ENST00000466591 PDE5AO76074 875 aa15.24■□□□□ 0.03
COL7A1-206ENST00000466591 CBR1P16152 277 aa15.24■□□□□ 0.03
COL7A1-206ENST00000466591 ZNF16P17020 682 aaPredicted RBP15.24■□□□□ 0.03
COL7A1-206ENST00000466591 NPR2P20594 1047 aa15.24■□□□□ 0.03
COL7A1-206ENST00000466591 GZMKP49863 264 aa15.24■□□□□ 0.03
COL7A1-206ENST00000466591 VLDLRP98155 873 aa15.24■□□□□ 0.03
COL7A1-206ENST00000466591 NFYCQ13952 458 aa15.24■□□□□ 0.03
COL7A1-206ENST00000466591 C3orf36Q3SXR2 165 aa15.24■□□□□ 0.03
COL7A1-206ENST00000466591 SPATA21Q7Z572 469 aa15.24■□□□□ 0.03
COL7A1-206ENST00000466591 MSRB3Q8IXL7 192 aa15.24■□□□□ 0.03
COL7A1-206ENST00000466591 ANKS4BQ8N8V4 417 aa15.24■□□□□ 0.03
COL7A1-206ENST00000466591 SCAIQ8N9R8 606 aa15.24■□□□□ 0.03
COL7A1-206ENST00000466591 ZNF540Q8NDQ6 660 aa15.24■□□□□ 0.03
COL7A1-206ENST00000466591 BOD1Q96IK1 185 aa15.24■□□□□ 0.03
COL7A1-206ENST00000466591 SORCS2Q96PQ0 1159 aa15.24■□□□□ 0.03
COL7A1-206ENST00000466591 OR2M2Q96R28 347 aa15.24■□□□□ 0.03
COL7A1-206ENST00000466591 MCHR1Q99705 422 aa15.24■□□□□ 0.03
COL7A1-206ENST00000466591 EMC6Q9BV81 110 aa15.24■□□□□ 0.03
COL7A1-206ENST00000466591 ULBP2Q9BZM5 246 aa15.24■□□□□ 0.03
COL7A1-206ENST00000466591 CHODLQ9H9P2 273 aa15.24■□□□□ 0.03
COL7A1-206ENST00000466591 LPAR3Q9UBY5 353 aa15.24■□□□□ 0.03
COL7A1-206ENST00000466591 KCNS2Q9ULS6 477 aa15.24■□□□□ 0.03
COL7A1-206ENST00000466591 JMJD1CQ15652 2540 aa15.24■□□□□ 0.03
COL7A1-206ENST00000466591 CR1P17927 2039 aa15.24■□□□□ 0.03
COL7A1-206ENST00000466591 SH3PXD2BA1X283 911 aa15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms