RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 ZNF671Q8TAW3 534 aa8.14□□□□□ -1.11
SYNE1-217ENST00000466159 LGALS14Q8TCE9 139 aa8.14□□□□□ -1.11
SYNE1-217ENST00000466159 HAVCR2Q8TDQ0 301 aa8.14□□□□□ -1.11
SYNE1-217ENST00000466159 LIPHQ8WWY8 451 aa8.14□□□□□ -1.11
SYNE1-217ENST00000466159 RGP1Q92546 391 aaPredicted RBP8.14□□□□□ -1.11
SYNE1-217ENST00000466159 TAAR8Q969N4 342 aa8.14□□□□□ -1.11
SYNE1-217ENST00000466159 ELF4Q99607 663 aaPredicted RBP8.14□□□□□ -1.11
SYNE1-217ENST00000466159 NUDT9Q9BW91 350 aa8.14□□□□□ -1.11
SYNE1-217ENST00000466159 TSPAN10Q9H1Z9 355 aaPredicted RBP8.14□□□□□ -1.11
SYNE1-217ENST00000466159 EPHA6Q9UF33 1036 aa8.14□□□□□ -1.11
SYNE1-217ENST00000466159 IGKV3D-11A0A0A0MRZ8 115 aa8.13□□□□□ -1.11
SYNE1-217ENST00000466159 A0A0A6YYJ9 748 aa8.13□□□□□ -1.11
SYNE1-217ENST00000466159 FRG2CA6NGY1 282 aa8.13□□□□□ -1.11
SYNE1-217ENST00000466159 TVP23AA6NH52 213 aa8.13□□□□□ -1.11
SYNE1-217ENST00000466159 ZNF879B4DU55 563 aa8.13□□□□□ -1.11
SYNE1-217ENST00000466159 KHNYNO15037 678 aaKnown RBP8.13□□□□□ -1.11
SYNE1-217ENST00000466159 MBTPS2O43462 519 aa8.13□□□□□ -1.11
SYNE1-217ENST00000466159 HCRTR2O43614 444 aa8.13□□□□□ -1.11
SYNE1-217ENST00000466159 TRIM3O75382 744 aaPredicted RBP8.13□□□□□ -1.11
SYNE1-217ENST00000466159 CD1AP06126 327 aa8.13□□□□□ -1.11
SYNE1-217ENST00000466159 CSNK1EP49674 416 aaKnown RBP8.13□□□□□ -1.11
SYNE1-217ENST00000466159 RPL6Q02878 288 aaKnown RBP8.13□□□□□ -1.11
SYNE1-217ENST00000466159 CFHR1Q03591 330 aa8.13□□□□□ -1.11
SYNE1-217ENST00000466159 ZNF117Q03924 483 aa8.13□□□□□ -1.11
SYNE1-217ENST00000466159 FAPQ12884 760 aa8.13□□□□□ -1.11
SYNE1-217ENST00000466159 TDGQ13569 410 aa8.13□□□□□ -1.11
SYNE1-217ENST00000466159 UBXN2BQ14CS0 331 aa8.13□□□□□ -1.11
SYNE1-217ENST00000466159 MESTQ5EB52 335 aa8.13□□□□□ -1.11
SYNE1-217ENST00000466159 C6orf183Q5T699 404 aa8.13□□□□□ -1.11
SYNE1-217ENST00000466159 C1QL3Q5VWW1 255 aa8.13□□□□□ -1.11
SYNE1-217ENST00000466159 OGFOD3Q6PK18 319 aa8.13□□□□□ -1.11
SYNE1-217ENST00000466159 MARCH3Q86UD3 253 aa8.13□□□□□ -1.11
SYNE1-217ENST00000466159 SIAH3Q8IW03 269 aa8.13□□□□□ -1.11
SYNE1-217ENST00000466159 OR6V1Q8N148 313 aa8.13□□□□□ -1.11
SYNE1-217ENST00000466159 TOMM5Q8N4H5 51 aa8.13□□□□□ -1.11
SYNE1-217ENST00000466159 ZNF433Q8N7K0 673 aaPredicted RBP8.13□□□□□ -1.11
SYNE1-217ENST00000466159 OR1L3Q8NH93 324 aa8.13□□□□□ -1.11
SYNE1-217ENST00000466159 RELTQ969Z4 430 aa8.13□□□□□ -1.11
SYNE1-217ENST00000466159 ADAD1Q96M93 576 aaKnown RBP8.13□□□□□ -1.11
SYNE1-217ENST00000466159 TSPAN32Q96QS1 320 aa8.13□□□□□ -1.11
SYNE1-217ENST00000466159 CCNL2Q96S94 520 aaPredicted RBP8.13□□□□□ -1.11
SYNE1-217ENST00000466159 EXOSC3Q9NQT5 275 aaKnown RBP8.13□□□□□ -1.11
SYNE1-217ENST00000466159 NUDT15Q9NV35 164 aa8.13□□□□□ -1.11
SYNE1-217ENST00000466159 GRHPRQ9UBQ7 328 aa8.13□□□□□ -1.11
SYNE1-217ENST00000466159 TEKT2Q9UIF3 430 aa8.13□□□□□ -1.11
SYNE1-217ENST00000466159 SPATA2Q9UM82 520 aa8.13□□□□□ -1.11
SYNE1-217ENST00000466159 ZNF281Q9Y2X9 895 aa8.13□□□□□ -1.11
SYNE1-217ENST00000466159 FER1L5A0AVI2 2057 aa8.13□□□□□ -1.11
SYNE1-217ENST00000466159 A0A1B0GTH9 108 aa8.13□□□□□ -1.11
SYNE1-217ENST00000466159 ANKRD61A6NGH8 418 aa8.13□□□□□ -1.11
SYNE1-217ENST00000466159 GPRIN2O60269 458 aa8.13□□□□□ -1.11
SYNE1-217ENST00000466159 GPANK1O95872 356 aa8.13□□□□□ -1.11
SYNE1-217ENST00000466159 ITPKBP27987 946 aa8.13□□□□□ -1.11
SYNE1-217ENST00000466159 MMP15P51511 669 aa8.13□□□□□ -1.11
SYNE1-217ENST00000466159 NR0B1P51843 470 aaKnown RBP8.13□□□□□ -1.11
SYNE1-217ENST00000466159 SLC25A1P53007 311 aa8.13□□□□□ -1.11
SYNE1-217ENST00000466159 CLDN12P56749 244 aa8.13□□□□□ -1.11
SYNE1-217ENST00000466159 HNRNPKP61978 463 aaKnown RBP eCLIP8.13□□□□□ -1.11
SYNE1-217ENST00000466159 BTG1P62324 171 aa8.13□□□□□ -1.11
SYNE1-217ENST00000466159 HSF2Q03933 536 aa8.13□□□□□ -1.11
SYNE1-217ENST00000466159 BIKQ13323 160 aa8.13□□□□□ -1.11
SYNE1-217ENST00000466159 YIF1BQ5BJH7 314 aa8.13□□□□□ -1.11
SYNE1-217ENST00000466159 LIPNQ5VXI9 398 aa8.13□□□□□ -1.11
SYNE1-217ENST00000466159 OTPQ5XKR4 325 aa8.13□□□□□ -1.11
SYNE1-217ENST00000466159 TIGD3Q6B0B8 471 aa8.13□□□□□ -1.11
SYNE1-217ENST00000466159 SLC16A9Q7RTY1 509 aa8.13□□□□□ -1.11
SYNE1-217ENST00000466159 C9orf40Q8IXQ3 194 aa8.13□□□□□ -1.11
SYNE1-217ENST00000466159 SLC35F3Q8IY50 421 aa8.13□□□□□ -1.11
SYNE1-217ENST00000466159 CMTM4Q8IZR5 234 aa8.13□□□□□ -1.11
SYNE1-217ENST00000466159 CEP76Q8TAP6 659 aa8.13□□□□□ -1.11
SYNE1-217ENST00000466159 RPS4Y2Q8TD47 263 aa8.13□□□□□ -1.11
SYNE1-217ENST00000466159 AKAP1Q92667 903 aaKnown RBP eCLIP8.13□□□□□ -1.11
SYNE1-217ENST00000466159 MRPL48Q96GC5 212 aaKnown RBP8.13□□□□□ -1.11
SYNE1-217ENST00000466159 CHRNA10Q9GZZ6 450 aa8.13□□□□□ -1.11
SYNE1-217ENST00000466159 ADAM19Q9H013 955 aa8.13□□□□□ -1.11
SYNE1-217ENST00000466159 ING3Q9NXR8 418 aa8.13□□□□□ -1.11
SYNE1-217ENST00000466159 MRM2Q9UI43 246 aaKnown RBP8.13□□□□□ -1.11
SYNE1-217ENST00000466159 MMACHCQ9Y4U1 282 aa8.13□□□□□ -1.11
SYNE1-217ENST00000466159 PCDHGA9Q9Y5G4 932 aaKnown RBP8.13□□□□□ -1.11
SYNE1-217ENST00000466159 UPK3AO75631 287 aa8.12□□□□□ -1.11
SYNE1-217ENST00000466159 IGF2P01344 180 aa8.12□□□□□ -1.11
SYNE1-217ENST00000466159 ANKRD34CP0C6C1 535 aa8.12□□□□□ -1.11
SYNE1-217ENST00000466159 APEHP13798 732 aaKnown RBP8.12□□□□□ -1.11
SYNE1-217ENST00000466159 FOLR1P15328 257 aa8.12□□□□□ -1.11
SYNE1-217ENST00000466159 S100A1P23297 94 aa8.12□□□□□ -1.11
SYNE1-217ENST00000466159 GIFP27352 417 aa8.12□□□□□ -1.11
SYNE1-217ENST00000466159 ARL4DP49703 201 aa8.12□□□□□ -1.11
SYNE1-217ENST00000466159 GZMKP49863 264 aa8.12□□□□□ -1.11
SYNE1-217ENST00000466159 FOXL2P58012 376 aa8.12□□□□□ -1.11
SYNE1-217ENST00000466159 HSD11B2P80365 405 aa8.12□□□□□ -1.11
SYNE1-217ENST00000466159 NSDHLQ15738 373 aa8.12□□□□□ -1.11
SYNE1-217ENST00000466159 CLPPQ16740 277 aaPredicted RBP8.12□□□□□ -1.11
SYNE1-217ENST00000466159 STPG1Q5TH74 334 aa8.12□□□□□ -1.11
SYNE1-217ENST00000466159 C1orf189Q5VU69 101 aa8.12□□□□□ -1.11
SYNE1-217ENST00000466159 BICRALQ6AI39 1079 aa8.12□□□□□ -1.11
SYNE1-217ENST00000466159 THOC7Q6I9Y2 204 aaKnown RBP8.12□□□□□ -1.11
SYNE1-217ENST00000466159 NANOGNBQ7Z5D8 188 aa8.12□□□□□ -1.11
SYNE1-217ENST00000466159 TIGD4Q8IY51 512 aa8.12□□□□□ -1.11
SYNE1-217ENST00000466159 TDHQ8IZJ6 230 aa8.12□□□□□ -1.11
SYNE1-217ENST00000466159 GCDHQ92947 438 aaPredicted RBP8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms