RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 ADRM1Q16186 407 aa12.18□□□□□ -0.46
USP4-206ENST00000461553 ANKRD16Q6P6B7 361 aa12.18□□□□□ -0.46
USP4-206ENST00000461553 DNM1P46Q6ZS02 220 aa12.18□□□□□ -0.46
USP4-206ENST00000461553 H1FNTQ75WM6 255 aaPredicted RBP12.18□□□□□ -0.46
USP4-206ENST00000461553 LINGO2Q7L985 606 aa12.18□□□□□ -0.46
USP4-206ENST00000461553 PTOV1Q86YD1 416 aa12.18□□□□□ -0.46
USP4-206ENST00000461553 SLC30A8Q8IWU4 369 aa12.18□□□□□ -0.46
USP4-206ENST00000461553 UEVLDQ8IX04 471 aa12.18□□□□□ -0.46
USP4-206ENST00000461553 SCAIQ8N9R8 606 aa12.18□□□□□ -0.46
USP4-206ENST00000461553 SMYD1Q8NB12 490 aa12.18□□□□□ -0.46
USP4-206ENST00000461553 PIK3C3Q8NEB9 887 aa12.18□□□□□ -0.46
USP4-206ENST00000461553 OR6S1Q8NH40 331 aa12.18□□□□□ -0.46
USP4-206ENST00000461553 MAGEE2Q8TD90 523 aaPredicted RBP12.18□□□□□ -0.46
USP4-206ENST00000461553 TSPEARQ8WU66 669 aa12.18□□□□□ -0.46
USP4-206ENST00000461553 ANKRD27Q96NW4 1050 aa12.18□□□□□ -0.46
USP4-206ENST00000461553 CGREF1Q99674 301 aa12.18□□□□□ -0.46
USP4-206ENST00000461553 RHNO1Q9BSD3 238 aa12.18□□□□□ -0.46
USP4-206ENST00000461553 KATNB1Q9BVA0 655 aa12.18□□□□□ -0.46
USP4-206ENST00000461553 RSPO3Q9BXY4 272 aaPredicted RBP12.18□□□□□ -0.46
USP4-206ENST00000461553 MOKQ9UQ07 419 aa12.18□□□□□ -0.46
USP4-206ENST00000461553 A0A096LPE4 126 aa12.17□□□□□ -0.46
USP4-206ENST00000461553 IGHV1-18A0A0C4DH31 117 aa12.17□□□□□ -0.46
USP4-206ENST00000461553 A0A1W2PPZ6 126 aa12.17□□□□□ -0.46
USP4-206ENST00000461553 M0R3H8 397 aa12.17□□□□□ -0.46
USP4-206ENST00000461553 TRAF3IP2O43734 574 aaPredicted RBP12.17□□□□□ -0.46
USP4-206ENST00000461553 FMO6PO60774 539 aa12.17□□□□□ -0.46
USP4-206ENST00000461553 ZNF432O94892 652 aa12.17□□□□□ -0.46
USP4-206ENST00000461553 MFN2O95140 757 aa12.17□□□□□ -0.46
USP4-206ENST00000461553 CRYAAP02489 173 aa12.17□□□□□ -0.46
USP4-206ENST00000461553 OPN1SWP03999 348 aa12.17□□□□□ -0.46
USP4-206ENST00000461553 VIMP08670 466 aaKnown RBP12.17□□□□□ -0.46
USP4-206ENST00000461553 CBLP22681 906 aa12.17□□□□□ -0.46
USP4-206ENST00000461553 APOBEC3AP31941 199 aaPredicted RBP12.17□□□□□ -0.46
USP4-206ENST00000461553 DSCR9P59020 149 aa12.17□□□□□ -0.46
USP4-206ENST00000461553 SNRPD2P62316 118 aaKnown RBP12.17□□□□□ -0.46
USP4-206ENST00000461553 TUBA1BP68363 451 aa12.17□□□□□ -0.46
USP4-206ENST00000461553 TUBA4AP68366 448 aa12.17□□□□□ -0.46
USP4-206ENST00000461553 POU3F1Q03052 451 aaPredicted RBP12.17□□□□□ -0.46
USP4-206ENST00000461553 KRTAP1-1Q07627 177 aa12.17□□□□□ -0.46
USP4-206ENST00000461553 SELPLGQ14242 412 aa12.17□□□□□ -0.46
USP4-206ENST00000461553 TUBA1AQ71U36 451 aa12.17□□□□□ -0.46
USP4-206ENST00000461553 C10orf53Q8N6V4 93 aa12.17□□□□□ -0.46
USP4-206ENST00000461553 ANKK1Q8NFD2 765 aa12.17□□□□□ -0.46
USP4-206ENST00000461553 BCL2L2Q92843 193 aaPredicted RBP12.17□□□□□ -0.46
USP4-206ENST00000461553 PRR14Q9BWN1 585 aa12.17□□□□□ -0.46
USP4-206ENST00000461553 NELFAQ9H3P2 528 aa12.17□□□□□ -0.46
USP4-206ENST00000461553 FKBP7Q9Y680 259 aa12.17□□□□□ -0.46
USP4-206ENST00000461553 PMF1-BGLAPU3KQ54 211 aa12.17□□□□□ -0.46
USP4-206ENST00000461553 RPL36A-HNRNPH2H7BZ11 118 aa12.16□□□□□ -0.46
USP4-206ENST00000461553 CHP2O43745 196 aa12.16□□□□□ -0.46
USP4-206ENST00000461553 BGLAPP02818 100 aa12.16□□□□□ -0.46
USP4-206ENST00000461553 CSF3P09919 207 aa12.16□□□□□ -0.46
USP4-206ENST00000461553 TROVE2P10155 538 aaKnown RBP eCLIP12.16□□□□□ -0.46
USP4-206ENST00000461553 HOXB1P14653 301 aaPredicted RBP12.16□□□□□ -0.46
USP4-206ENST00000461553 PCGF2P35227 344 aa12.16□□□□□ -0.46
USP4-206ENST00000461553 CDH12P55289 794 aa12.16□□□□□ -0.46
USP4-206ENST00000461553 PUDPQ08623 228 aa12.16□□□□□ -0.46
USP4-206ENST00000461553 CEACAM16Q2WEN9 425 aa12.16□□□□□ -0.46
USP4-206ENST00000461553 TRMT5Q32P41 509 aaKnown RBP12.16□□□□□ -0.46
USP4-206ENST00000461553 C3orf36Q3SXR2 165 aa12.16□□□□□ -0.46
USP4-206ENST00000461553 INTS11Q5TA45 600 aaKnown RBP12.16□□□□□ -0.46
USP4-206ENST00000461553 ZNF613Q6PF04 617 aa12.16□□□□□ -0.46
USP4-206ENST00000461553 PATL1Q86TB9 770 aaKnown RBP12.16□□□□□ -0.46
USP4-206ENST00000461553 RETREG3Q86VR2 466 aa12.16□□□□□ -0.46
USP4-206ENST00000461553 SLC26A7Q8TE54 656 aa12.16□□□□□ -0.46
USP4-206ENST00000461553 HTRA1Q92743 480 aa12.16□□□□□ -0.46
USP4-206ENST00000461553 FBXO17Q96EF6 278 aa12.16□□□□□ -0.46
USP4-206ENST00000461553 OR2M2Q96R28 347 aa12.16□□□□□ -0.46
USP4-206ENST00000461553 MCHR1Q99705 422 aa12.16□□□□□ -0.46
USP4-206ENST00000461553 ARHGDIGQ99819 225 aa12.16□□□□□ -0.46
USP4-206ENST00000461553 TMEM43Q9BTV4 400 aa12.16□□□□□ -0.46
USP4-206ENST00000461553 TMEM120AQ9BXJ8 343 aa12.16□□□□□ -0.46
USP4-206ENST00000461553 GPR35Q9HC97 309 aa12.16□□□□□ -0.46
USP4-206ENST00000461553 B3GAT2Q9NPZ5 323 aa12.16□□□□□ -0.46
USP4-206ENST00000461553 MRGBPQ9NV56 204 aa12.16□□□□□ -0.46
USP4-206ENST00000461553 CRNNQ9UBG3 495 aaPredicted RBP12.16□□□□□ -0.46
USP4-206ENST00000461553 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.15□□□□□ -0.464e-9■■■■■ 34.1
USP4-206ENST00000461553 IGHV4-30-2A0A087WSY4 118 aa12.15□□□□□ -0.46
USP4-206ENST00000461553 LOC102725191A0A1B0GVB3 256 aa12.15□□□□□ -0.46
USP4-206ENST00000461553 CPSF4LA6NMK7 179 aaKnown RBP12.15□□□□□ -0.46
USP4-206ENST00000461553 ZNF99A8MXY4 864 aaPredicted RBP12.15□□□□□ -0.46
USP4-206ENST00000461553 M0R3G1 203 aa12.15□□□□□ -0.46
USP4-206ENST00000461553 C8BP07358 591 aa12.15□□□□□ -0.46
USP4-206ENST00000461553 CECR9P0C854 216 aa12.15□□□□□ -0.46
USP4-206ENST00000461553 CAPZA2P47755 286 aa12.15□□□□□ -0.46
USP4-206ENST00000461553 ARF1P84077 181 aaKnown RBP12.15□□□□□ -0.46
USP4-206ENST00000461553 NAAAQ02083 359 aa12.15□□□□□ -0.46
USP4-206ENST00000461553 PMS2P3Q13401 168 aa12.15□□□□□ -0.46
USP4-206ENST00000461553 METTL21CQ5VZV1 264 aa12.15□□□□□ -0.46
USP4-206ENST00000461553 CARD17Q5XLA6 110 aa12.15□□□□□ -0.46
USP4-206ENST00000461553 TMEM123Q8N131 208 aa12.15□□□□□ -0.46
USP4-206ENST00000461553 ZNF525Q8N782 197 aa12.15□□□□□ -0.46
USP4-206ENST00000461553 OR10A6Q8NH74 314 aa12.15□□□□□ -0.46
USP4-206ENST00000461553 VANGL1Q8TAA9 524 aaPredicted RBP12.15□□□□□ -0.46
USP4-206ENST00000461553 RASSF5Q8WWW0 418 aa12.15□□□□□ -0.46
USP4-206ENST00000461553 SLC41A3Q96GZ6 507 aa12.15□□□□□ -0.46
USP4-206ENST00000461553 MOGAT1Q96PD6 335 aa12.15□□□□□ -0.46
USP4-206ENST00000461553 WFDC6Q9BQY6 131 aa12.15□□□□□ -0.46
USP4-206ENST00000461553 KAT8Q9H7Z6 458 aaKnown RBP12.15□□□□□ -0.46
USP4-206ENST00000461553 CRLF2Q9HC73 371 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms