RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 POU2F1P14859 743 aa10.85□□□□□ -0.67
PTPRF-208ENST00000437607 ZNF26P17031 533 aaPredicted RBP10.85□□□□□ -0.67
PTPRF-208ENST00000437607 CD53P19397 219 aa10.85□□□□□ -0.67
PTPRF-208ENST00000437607 GSTM3P21266 225 aa10.85□□□□□ -0.67
PTPRF-208ENST00000437607 FPR3P25089 353 aa10.85□□□□□ -0.67
PTPRF-208ENST00000437607 CTSSP25774 331 aa10.85□□□□□ -0.67
PTPRF-208ENST00000437607 GTF2E2P29084 291 aaKnown RBP10.85□□□□□ -0.67
PTPRF-208ENST00000437607 MAP2K6P52564 334 aa10.85□□□□□ -0.67
PTPRF-208ENST00000437607 FOXF2Q12947 444 aa10.85□□□□□ -0.67
PTPRF-208ENST00000437607 KEAP1Q14145 624 aa10.85□□□□□ -0.67
PTPRF-208ENST00000437607 TAF11Q15544 211 aa10.85□□□□□ -0.67
PTPRF-208ENST00000437607 GLYR1Q49A26 553 aaPredicted RBP10.85□□□□□ -0.67
PTPRF-208ENST00000437607 KDM4DQ6B0I6 523 aa10.85□□□□□ -0.67
PTPRF-208ENST00000437607 ZNF770Q6IQ21 691 aaPredicted RBP10.85□□□□□ -0.67
PTPRF-208ENST00000437607 PLXDC2Q6UX71 529 aa10.85□□□□□ -0.67
PTPRF-208ENST00000437607 GALNT5Q7Z7M9 940 aa10.85□□□□□ -0.67
PTPRF-208ENST00000437607 BIVMQ86UB2 503 aa10.85□□□□□ -0.67
PTPRF-208ENST00000437607 P3H2Q8IVL5 708 aa10.85□□□□□ -0.67
PTPRF-208ENST00000437607 FAM83FQ8NEG4 500 aaPredicted RBP10.85□□□□□ -0.67
PTPRF-208ENST00000437607 FANK1Q8TC84 345 aa10.85□□□□□ -0.67
PTPRF-208ENST00000437607 STK35Q8TDR2 534 aa10.85□□□□□ -0.67
PTPRF-208ENST00000437607 SMPDL3BQ92485 455 aa10.85□□□□□ -0.67
PTPRF-208ENST00000437607 SGTBQ96EQ0 304 aa10.85□□□□□ -0.67
PTPRF-208ENST00000437607 C18orf12Q96KH6 178 aa10.85□□□□□ -0.67
PTPRF-208ENST00000437607 SLC29A1Q99808 456 aa10.85□□□□□ -0.67
PTPRF-208ENST00000437607 NIPSNAP1Q9BPW8 284 aa10.85□□□□□ -0.67
PTPRF-208ENST00000437607 NDEL1Q9GZM8 345 aa10.85□□□□□ -0.67
PTPRF-208ENST00000437607 RIBC2Q9H4K1 309 aa10.85□□□□□ -0.67
PTPRF-208ENST00000437607 CALHM2Q9HA72 323 aa10.85□□□□□ -0.67
PTPRF-208ENST00000437607 ROS1P08922 2347 aa10.85□□□□□ -0.67
PTPRF-208ENST00000437607 TRAV36DV7A0A075B6V5 113 aa10.84□□□□□ -0.67
PTPRF-208ENST00000437607 HTR3EA5X5Y0 456 aa10.84□□□□□ -0.67
PTPRF-208ENST00000437607 GJE1A6NN92 205 aa10.84□□□□□ -0.67
PTPRF-208ENST00000437607 EFCAB9A8MZ26 197 aa10.84□□□□□ -0.67
PTPRF-208ENST00000437607 EEF1E1-BLOC1S5C9J1V9 151 aa10.84□□□□□ -0.67
PTPRF-208ENST00000437607 H0YJX3 145 aa10.84□□□□□ -0.67
PTPRF-208ENST00000437607 H3BML4 177 aa10.84□□□□□ -0.67
PTPRF-208ENST00000437607 EEF1E1O43324 174 aaKnown RBP10.84□□□□□ -0.67
PTPRF-208ENST00000437607 ZNF208O43345 1280 aa10.84□□□□□ -0.67
PTPRF-208ENST00000437607 IL18BPO95998 194 aa10.84□□□□□ -0.67
PTPRF-208ENST00000437607 IGF2P01344 180 aa10.84□□□□□ -0.67
PTPRF-208ENST00000437607 PEPDP12955 493 aa10.84□□□□□ -0.67
PTPRF-208ENST00000437607 OPRM1P35372 400 aa10.84□□□□□ -0.67
PTPRF-208ENST00000437607 OMPP47874 163 aa10.84□□□□□ -0.67
PTPRF-208ENST00000437607 DAPP51397 102 aa10.84□□□□□ -0.67
PTPRF-208ENST00000437607 CTBP2P56545 445 aa10.84□□□□□ -0.67
PTPRF-208ENST00000437607 PRKCDQ05655 676 aa10.84□□□□□ -0.67
PTPRF-208ENST00000437607 TSPAN31Q12999 210 aa10.84□□□□□ -0.67
PTPRF-208ENST00000437607 POU4F3Q15319 338 aa10.84□□□□□ -0.67
PTPRF-208ENST00000437607 SYT14P1Q58G82 188 aa10.84□□□□□ -0.67
PTPRF-208ENST00000437607 C1orf140Q5VVS0 124 aa10.84□□□□□ -0.67
PTPRF-208ENST00000437607 C1orf94Q6P1W5 598 aa10.84□□□□□ -0.67
PTPRF-208ENST00000437607 LINC00114Q6XXX2 140 aa10.84□□□□□ -0.67
PTPRF-208ENST00000437607 ZER1Q7Z7L7 766 aa10.84□□□□□ -0.67
PTPRF-208ENST00000437607 ADGRE4PQ86SQ3 457 aa10.84□□□□□ -0.67
PTPRF-208ENST00000437607 YRDCQ86U90 279 aaKnown RBP10.84□□□□□ -0.67
PTPRF-208ENST00000437607 CXorf67Q86X51 503 aaPredicted RBP10.84□□□□□ -0.67
PTPRF-208ENST00000437607 KIF18BQ86Y91 864 aa10.84□□□□□ -0.67
PTPRF-208ENST00000437607 PARP8Q8N3A8 854 aa10.84□□□□□ -0.67
PTPRF-208ENST00000437607 ATP6V1C2Q8NEY4 427 aa10.84□□□□□ -0.67
PTPRF-208ENST00000437607 OR5M1Q8NGP8 315 aa10.84□□□□□ -0.67
PTPRF-208ENST00000437607 POC1BQ8TC44 478 aa10.84□□□□□ -0.67
PTPRF-208ENST00000437607 ZPLD1Q8TCW7 415 aa10.84□□□□□ -0.67
PTPRF-208ENST00000437607 ABTB1Q969K4 478 aaPredicted RBP10.84□□□□□ -0.67
PTPRF-208ENST00000437607 ZNF524Q96C55 264 aa10.84□□□□□ -0.67
PTPRF-208ENST00000437607 BPIFA2Q96DR5 249 aa10.84□□□□□ -0.67
PTPRF-208ENST00000437607 NPAS1Q99742 590 aa10.84□□□□□ -0.67
PTPRF-208ENST00000437607 Q9H521 79 aa10.84□□□□□ -0.67
PTPRF-208ENST00000437607 TMEM185BQ9H7F4 350 aa10.84□□□□□ -0.67
PTPRF-208ENST00000437607 MEPEQ9NQ76 525 aaPredicted RBP10.84□□□□□ -0.67
PTPRF-208ENST00000437607 C20orf141Q9NUB4 165 aa10.84□□□□□ -0.67
PTPRF-208ENST00000437607 TMEFF2Q9UIK5 374 aaPredicted RBP10.84□□□□□ -0.67
PTPRF-208ENST00000437607 FBN1P35555 2871 aaKnown RBP10.84□□□□□ -0.67
PTPRF-208ENST00000437607 OR2M5A3KFT3 312 aa10.83□□□□□ -0.68
PTPRF-208ENST00000437607 UNC119BA6NIH7 251 aa10.83□□□□□ -0.68
PTPRF-208ENST00000437607 H3BN98 237 aa10.83□□□□□ -0.68
PTPRF-208ENST00000437607 MITFO75030 526 aaPredicted RBP10.83□□□□□ -0.68
PTPRF-208ENST00000437607 OR7A10O76100 309 aa10.83□□□□□ -0.68
PTPRF-208ENST00000437607 GOSR1O95249 250 aa10.83□□□□□ -0.68
PTPRF-208ENST00000437607 SOX14O95416 240 aa10.83□□□□□ -0.68
PTPRF-208ENST00000437607 GASTP01350 101 aa10.83□□□□□ -0.68
PTPRF-208ENST00000437607 INHBBP09529 407 aa10.83□□□□□ -0.68
PTPRF-208ENST00000437607 TMIGD3P0DMS9 266 aaPredicted RBP10.83□□□□□ -0.68
PTPRF-208ENST00000437607 FKBP2P26885 142 aaKnown RBP10.83□□□□□ -0.68
PTPRF-208ENST00000437607 SFTPDP35247 375 aa10.83□□□□□ -0.68
PTPRF-208ENST00000437607 IDUAP35475 653 aa10.83□□□□□ -0.68
PTPRF-208ENST00000437607 RPS5P46782 204 aaKnown RBP10.83□□□□□ -0.68
PTPRF-208ENST00000437607 GSSP48637 474 aa10.83□□□□□ -0.68
PTPRF-208ENST00000437607 SLC9A3P48764 834 aa10.83□□□□□ -0.68
PTPRF-208ENST00000437607 TPD52P55327 224 aaPredicted RBP10.83□□□□□ -0.68
PTPRF-208ENST00000437607 LSM11P83369 360 aaKnown RBP eCLIP10.83□□□□□ -0.68
PTPRF-208ENST00000437607 COX10Q12887 443 aa10.83□□□□□ -0.68
PTPRF-208ENST00000437607 FAM69AQ5T7M9 428 aa10.83□□□□□ -0.68
PTPRF-208ENST00000437607 RPL13AP3Q6NVV1 102 aa10.83□□□□□ -0.68
PTPRF-208ENST00000437607 KLHL17Q6TDP4 642 aa10.83□□□□□ -0.68
PTPRF-208ENST00000437607 ZNF620Q6ZNG0 422 aa10.83□□□□□ -0.68
PTPRF-208ENST00000437607 NANOGNBQ7Z5D8 188 aa10.83□□□□□ -0.68
PTPRF-208ENST00000437607 MEX3DQ86XN8 651 aaKnown RBP10.83□□□□□ -0.68
PTPRF-208ENST00000437607 ADGRG3Q86Y34 549 aa10.83□□□□□ -0.68
PTPRF-208ENST00000437607 ZNF555Q8NEP9 628 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms