RNA–Protein interactions for RNA: ENST00000436336.6

CPSF4-204, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CPSF4, Length 1,738 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-204ENST00000436336 SRYQ05066 204 aa20.58■□□□□ 0.89
CPSF4-204ENST00000436336 CDK5R2Q13319 367 aa20.58■□□□□ 0.89
CPSF4-204ENST00000436336 SLC35F1Q5T1Q4 408 aa20.58■□□□□ 0.89
CPSF4-204ENST00000436336 KDM8Q8N371 416 aa20.58■□□□□ 0.89
CPSF4-204ENST00000436336 EXD3Q8N9H8 876 aa20.58■□□□□ 0.89
CPSF4-204ENST00000436336 RASD1Q9Y272 281 aa20.58■□□□□ 0.89
CPSF4-204ENST00000436336 LOC102725191A0A1B0GVB3 256 aa20.58■□□□□ 0.88
CPSF4-204ENST00000436336 ZNF814B7Z6K7 855 aa20.58■□□□□ 0.88
CPSF4-204ENST00000436336 VAMP5O95183 116 aa20.58■□□□□ 0.88
CPSF4-204ENST00000436336 TXNDC12O95881 172 aa20.58■□□□□ 0.88
CPSF4-204ENST00000436336 IGHMP01871 453 aa20.58■□□□□ 0.88
CPSF4-204ENST00000436336 SDHAP31040 664 aa20.58■□□□□ 0.88
CPSF4-204ENST00000436336 TEKQ02763 1124 aa20.58■□□□□ 0.88
CPSF4-204ENST00000436336 EMC4Q5J8M3 183 aa20.58■□□□□ 0.88
CPSF4-204ENST00000436336 GPR139Q6DWJ6 353 aa20.58■□□□□ 0.88
CPSF4-204ENST00000436336 UGT2A3Q6UWM9 527 aa20.58■□□□□ 0.88
CPSF4-204ENST00000436336 CNIH3Q8TBE1 160 aa20.58■□□□□ 0.88
CPSF4-204ENST00000436336 TMEM163Q8TC26 289 aa20.58■□□□□ 0.88
CPSF4-204ENST00000436336 APH1BQ8WW43 257 aa20.58■□□□□ 0.88
CPSF4-204ENST00000436336 WDYHV1Q96HA8 205 aa20.58■□□□□ 0.88
CPSF4-204ENST00000436336 OXGR1Q96P68 337 aa20.58■□□□□ 0.88
CPSF4-204ENST00000436336 TSPAN32Q96QS1 320 aa20.58■□□□□ 0.88
CPSF4-204ENST00000436336 NR1H4Q96RI1 486 aaPredicted RBP20.58■□□□□ 0.88
CPSF4-204ENST00000436336 IL4I1Q96RQ9 567 aa20.58■□□□□ 0.88
CPSF4-204ENST00000436336 TXNIPQ9H3M7 391 aa20.58■□□□□ 0.88
CPSF4-204ENST00000436336 B3GAT1Q9P2W7 334 aa20.58■□□□□ 0.88
CPSF4-204ENST00000436336 GRHPRQ9UBQ7 328 aa20.58■□□□□ 0.88
CPSF4-204ENST00000436336 KLHL21Q9UJP4 597 aa20.58■□□□□ 0.88
CPSF4-204ENST00000436336 ZNF346Q9UL40 294 aaKnown RBP20.58■□□□□ 0.88
CPSF4-204ENST00000436336 A0A1W2PRG6 482 aa20.57■□□□□ 0.88
CPSF4-204ENST00000436336 NPIPB13A6NJU9 1138 aa20.57■□□□□ 0.88
CPSF4-204ENST00000436336 NPIPB4C9JG80 1138 aa20.57■□□□□ 0.88
CPSF4-204ENST00000436336 TLX2O43763 284 aaPredicted RBP20.57■□□□□ 0.88
CPSF4-204ENST00000436336 PLGP00747 810 aaPredicted RBP20.57■□□□□ 0.88
CPSF4-204ENST00000436336 IFNGP01579 166 aa20.57■□□□□ 0.88
CPSF4-204ENST00000436336 SFTPCP11686 197 aa20.57■□□□□ 0.88
CPSF4-204ENST00000436336 MLLT10P55197 1068 aa20.57■□□□□ 0.88
CPSF4-204ENST00000436336 C19orf48Q6RUI8 117 aa20.57■□□□□ 0.88
CPSF4-204ENST00000436336 CCDC103Q8IW40 242 aa20.57■□□□□ 0.88
CPSF4-204ENST00000436336 FAM26EQ8N5C1 309 aa20.57■□□□□ 0.88
CPSF4-204ENST00000436336 TEX19Q8NA77 164 aa20.57■□□□□ 0.88
CPSF4-204ENST00000436336 Q96M85 177 aa20.57■□□□□ 0.88
CPSF4-204ENST00000436336 SLC25A18Q9H1K4 315 aa20.57■□□□□ 0.88
CPSF4-204ENST00000436336 FN3KQ9H479 309 aa20.57■□□□□ 0.88
CPSF4-204ENST00000436336 AASSQ9UDR5 926 aa20.57■□□□□ 0.88
CPSF4-204ENST00000436336 NOX1Q9Y5S8 564 aa20.57■□□□□ 0.88
CPSF4-204ENST00000436336 RIIAD1A6NNX1 92 aa20.56■□□□□ 0.88
CPSF4-204ENST00000436336 SMAD9O15198 467 aaKnown RBP20.56■□□□□ 0.88
CPSF4-204ENST00000436336 WBP4O75554 376 aaKnown RBP20.56■□□□□ 0.88
CPSF4-204ENST00000436336 SERPINI2O75830 405 aa20.56■□□□□ 0.88
CPSF4-204ENST00000436336 SLC2A10O95528 541 aa20.56■□□□□ 0.88
CPSF4-204ENST00000436336 HLA-DOBP13765 273 aa20.56■□□□□ 0.88
CPSF4-204ENST00000436336 HIST1H1CP16403 213 aaKnown RBP20.56■□□□□ 0.88
CPSF4-204ENST00000436336 KLK2P20151 261 aa20.56■□□□□ 0.88
CPSF4-204ENST00000436336 POU3F1Q03052 451 aaPredicted RBP20.56■□□□□ 0.88
CPSF4-204ENST00000436336 ACKR1Q16570 336 aa20.56■□□□□ 0.88
CPSF4-204ENST00000436336 SLC25A30Q5SVS4 291 aa20.56■□□□□ 0.88
CPSF4-204ENST00000436336 ZNF362Q5T0B9 420 aaPredicted RBP20.56■□□□□ 0.88
CPSF4-204ENST00000436336 UEVLDQ8IX04 471 aa20.56■□□□□ 0.88
CPSF4-204ENST00000436336 LSM14AQ8ND56 463 aaKnown RBP20.56■□□□□ 0.88
CPSF4-204ENST00000436336 SARAFQ96BY9 339 aa20.56■□□□□ 0.88
CPSF4-204ENST00000436336 ZNF845Q96IR2 970 aaPredicted RBP20.56■□□□□ 0.88
CPSF4-204ENST00000436336 UCN2Q96RP3 112 aa20.56■□□□□ 0.88
CPSF4-204ENST00000436336 PRDM14Q9GZV8 571 aa20.56■□□□□ 0.88
CPSF4-204ENST00000436336 TNFRSF10DQ9UBN6 386 aa20.56■□□□□ 0.88
CPSF4-204ENST00000436336 ATMQ13315 3056 aa20.56■□□□□ 0.88
CPSF4-204ENST00000436336 IGHV3-15A0A0B4J1V0 119 aa20.56■□□□□ 0.88
CPSF4-204ENST00000436336 TEX13CA0A0J9YWL9 993 aa20.56■□□□□ 0.88
CPSF4-204ENST00000436336 RAMP1O60894 148 aa20.56■□□□□ 0.88
CPSF4-204ENST00000436336 WISP2O76076 250 aa20.56■□□□□ 0.88
CPSF4-204ENST00000436336 ZNF3P17036 446 aa20.56■□□□□ 0.88
CPSF4-204ENST00000436336 RPL27P61353 136 aaKnown RBP20.56■□□□□ 0.88
CPSF4-204ENST00000436336 HSF1Q00613 529 aa20.56■□□□□ 0.88
CPSF4-204ENST00000436336 TOP3AQ13472 1001 aaPredicted RBP20.56■□□□□ 0.88
CPSF4-204ENST00000436336 POU4F3Q15319 338 aa20.56■□□□□ 0.88
CPSF4-204ENST00000436336 C6orf141Q5SZD1 244 aa20.56■□□□□ 0.88
CPSF4-204ENST00000436336 GPAT4Q86UL3 456 aa20.56■□□□□ 0.88
CPSF4-204ENST00000436336 RASD2Q96D21 266 aa20.56■□□□□ 0.88
CPSF4-204ENST00000436336 GPR137Q96N19 417 aa20.56■□□□□ 0.88
CPSF4-204ENST00000436336 GPR52Q9Y2T5 361 aa20.56■□□□□ 0.88
CPSF4-204ENST00000436336 DAP3P51398 398 aaKnown RBP20.55■□□□□ 0.88
CPSF4-204ENST00000436336 CHN2P52757 468 aa20.55■□□□□ 0.88
CPSF4-204ENST00000436336 CXCR4P61073 352 aa20.55■□□□□ 0.88
CPSF4-204ENST00000436336 KHDRBS1Q07666 443 aaKnown RBP eCLIP20.55■□□□□ 0.88
CPSF4-204ENST00000436336 OCLNQ16625 522 aa20.55■□□□□ 0.88
CPSF4-204ENST00000436336 TMEM201Q5SNT2 666 aa20.55■□□□□ 0.88
CPSF4-204ENST00000436336 MEDAGQ5VYS4 303 aa20.55■□□□□ 0.88
CPSF4-204ENST00000436336 ZNF324BQ6AW86 544 aaPredicted RBP20.55■□□□□ 0.88
CPSF4-204ENST00000436336 LAIR2Q6ISS4 152 aa20.55■□□□□ 0.88
CPSF4-204ENST00000436336 CHMP1BQ7LBR1 199 aa20.55■□□□□ 0.88
CPSF4-204ENST00000436336 ZNF786Q8N393 782 aa20.55■□□□□ 0.88
CPSF4-204ENST00000436336 ARIH2OSQ8N7S6 290 aa20.55■□□□□ 0.88
CPSF4-204ENST00000436336 OR52E2Q8NGJ4 325 aa20.55■□□□□ 0.88
CPSF4-204ENST00000436336 OR4K13Q8NH42 304 aa20.55■□□□□ 0.88
CPSF4-204ENST00000436336 HDAC2Q92769 488 aaKnown RBP20.55■□□□□ 0.88
CPSF4-204ENST00000436336 Q96MT0 163 aa20.55■□□□□ 0.88
CPSF4-204ENST00000436336 SF3B5Q9BWJ5 86 aaKnown RBP20.55■□□□□ 0.88
CPSF4-204ENST00000436336 CLN6Q9NWW5 311 aa20.55■□□□□ 0.88
CPSF4-204ENST00000436336 CAMK2AQ9UQM7 478 aa20.55■□□□□ 0.88
CPSF4-204ENST00000436336 A0A1B0GTH9 108 aa20.54■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms