RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 FCRLAQ7L513 359 aa8.17□□□□□ -1.1
LIG3-202ENST00000378526 SEC22AQ96IW7 307 aa8.17□□□□□ -1.1
LIG3-202ENST00000378526 HRASLSQ9HDD0 168 aa8.17□□□□□ -1.1
LIG3-202ENST00000378526 GPR160Q9UJ42 338 aa8.17□□□□□ -1.1
LIG3-202ENST00000378526 TCRBV7S2A1N4TA0A589 114 aa8.17□□□□□ -1.1
LIG3-202ENST00000378526 ANTXRLA6NF34 631 aa8.17□□□□□ -1.1
LIG3-202ENST00000378526 CLEC12BQ2HXU8 276 aa8.17□□□□□ -1.1
LIG3-202ENST00000378526 ZNF787Q6DD87 383 aa8.17□□□□□ -1.1
LIG3-202ENST00000378526 FDX2Q6P4F2 183 aa8.17□□□□□ -1.1
LIG3-202ENST00000378526 C2CD4AQ8NCU7 369 aaPredicted RBP8.17□□□□□ -1.1
LIG3-202ENST00000378526 DMRTA2Q96SC8 542 aa8.17□□□□□ -1.1
LIG3-202ENST00000378526 TMEM106CQ9BVX2 250 aa8.17□□□□□ -1.1
LIG3-202ENST00000378526 PIM2Q9P1W9 311 aa8.17□□□□□ -1.1
LIG3-202ENST00000378526 B4GALT7Q9UBV7 327 aa8.17□□□□□ -1.1
LIG3-202ENST00000378526 OR7C2O60412 319 aa8.16□□□□□ -1.1
LIG3-202ENST00000378526 GLSO94925 669 aaPredicted RBP8.16□□□□□ -1.1
LIG3-202ENST00000378526 F2P00734 622 aa8.16□□□□□ -1.1
LIG3-202ENST00000378526 ZNF728P0DKX0 622 aa8.16□□□□□ -1.1
LIG3-202ENST00000378526 FGF3P11487 239 aaPredicted RBP8.16□□□□□ -1.1
LIG3-202ENST00000378526 GGT5P36269 586 aa8.16□□□□□ -1.1
LIG3-202ENST00000378526 VEZF1Q14119 521 aa8.16□□□□□ -1.1
LIG3-202ENST00000378526 CPEB4Q17RY0 729 aaKnown RBP eCLIP8.16□□□□□ -1.1
LIG3-202ENST00000378526 PGGHGQ32M88 737 aa8.16□□□□□ -1.1
LIG3-202ENST00000378526 C1QTNF12Q5T7M4 302 aa8.16□□□□□ -1.1
LIG3-202ENST00000378526 SLC16A14Q7RTX9 510 aa8.16□□□□□ -1.1
LIG3-202ENST00000378526 B3GNT8Q7Z7M8 397 aa8.16□□□□□ -1.1
LIG3-202ENST00000378526 LHFPL5Q8TAF8 219 aa8.16□□□□□ -1.1
LIG3-202ENST00000378526 NCOR1P1Q9H4R4 102 aa8.16□□□□□ -1.1
LIG3-202ENST00000378526 DCAF13Q9NV06 445 aaKnown RBP8.16□□□□□ -1.1
LIG3-202ENST00000378526 CPA4Q9UI42 421 aa8.16□□□□□ -1.1
LIG3-202ENST00000378526 SLC35A3Q9Y2D2 325 aa8.16□□□□□ -1.1
LIG3-202ENST00000378526 WASHC3Q9Y3C0 194 aa8.16□□□□□ -1.1
LIG3-202ENST00000378526 NEXMIFQ5QGS0 1516 aa8.16□□□□□ -1.1
LIG3-202ENST00000378526 SCN3AQ9NY46 2000 aa8.16□□□□□ -1.1
LIG3-202ENST00000378526 BCL2L11O43521 198 aa8.16□□□□□ -1.1
LIG3-202ENST00000378526 LY86O95711 162 aa8.16□□□□□ -1.1
LIG3-202ENST00000378526 FUCA1P04066 466 aa8.16□□□□□ -1.1
LIG3-202ENST00000378526 DRD2P14416 443 aa8.16□□□□□ -1.1
LIG3-202ENST00000378526 GRM5P41594 1212 aa8.16□□□□□ -1.1
LIG3-202ENST00000378526 OR4D1Q15615 310 aa8.16□□□□□ -1.1
LIG3-202ENST00000378526 PRAMEF18Q5VWM3 479 aa8.16□□□□□ -1.1
LIG3-202ENST00000378526 TSEN54Q7Z6J9 526 aaKnown RBP8.16□□□□□ -1.1
LIG3-202ENST00000378526 PRR18Q8N4B5 295 aa8.16□□□□□ -1.1
LIG3-202ENST00000378526 CPA6Q8N4T0 437 aa8.16□□□□□ -1.1
LIG3-202ENST00000378526 PPTC7Q8NI37 304 aa8.16□□□□□ -1.1
LIG3-202ENST00000378526 FAM151AQ8WW52 585 aa8.16□□□□□ -1.1
LIG3-202ENST00000378526 AMDHD2Q9Y303 409 aa8.16□□□□□ -1.1
LIG3-202ENST00000378526 TMEM265A0A087WTH1 108 aa8.16□□□□□ -1.1
LIG3-202ENST00000378526 ZNF98A6NK75 572 aa8.16□□□□□ -1.1
LIG3-202ENST00000378526 OR52A4PA6NMU1 304 aa8.16□□□□□ -1.1
LIG3-202ENST00000378526 ANKRD30BLA7E2S9 258 aa8.16□□□□□ -1.1
LIG3-202ENST00000378526 SORBS2O94875 1100 aaKnown RBP8.16□□□□□ -1.1
LIG3-202ENST00000378526 SIX3O95343 332 aaPredicted RBP8.16□□□□□ -1.1
LIG3-202ENST00000378526 MT-CYBP00156 380 aaPredicted RBP8.16□□□□□ -1.1
LIG3-202ENST00000378526 GBAP04062 536 aa8.16□□□□□ -1.1
LIG3-202ENST00000378526 INSRRP14616 1297 aa8.16□□□□□ -1.1
LIG3-202ENST00000378526 PCBP4P57723 403 aaKnown RBP8.16□□□□□ -1.1
LIG3-202ENST00000378526 PRAMEF8Q5VWM4 474 aa8.16□□□□□ -1.1
LIG3-202ENST00000378526 PRAMEF7Q5VXH5 474 aa8.16□□□□□ -1.1
LIG3-202ENST00000378526 SFXN4Q6P4A7 337 aa8.16□□□□□ -1.1
LIG3-202ENST00000378526 FAM210BQ96KR6 192 aa8.16□□□□□ -1.1
LIG3-202ENST00000378526 HDAC8Q9BY41 377 aa8.16□□□□□ -1.1
LIG3-202ENST00000378526 GALNT9Q9HCQ5 603 aa8.16□□□□□ -1.1
LIG3-202ENST00000378526 CPEP16870 476 aa8.16□□□□□ -1.1
LIG3-202ENST00000378526 SULT1A1P50225 295 aa8.16□□□□□ -1.1
LIG3-202ENST00000378526 CLDN8P56748 225 aa8.16□□□□□ -1.1
LIG3-202ENST00000378526 ZNF85Q03923 595 aa8.16□□□□□ -1.1
LIG3-202ENST00000378526 SLC24A5Q71RS6 500 aa8.16□□□□□ -1.1
LIG3-202ENST00000378526 GPR137CQ8N3F9 429 aa8.16□□□□□ -1.1
LIG3-202ENST00000378526 OR4S1Q8NGB4 309 aa8.16□□□□□ -1.1
LIG3-202ENST00000378526 OSBPL2Q9H1P3 480 aa8.16□□□□□ -1.1
LIG3-202ENST00000378526 ZNF318Q5VUA4 2279 aa8.16□□□□□ -1.1
LIG3-202ENST00000378526 RNF17Q9BXT8 1623 aaKnown RBP8.16□□□□□ -1.1
LIG3-202ENST00000378526 AQP7P3A6NL99 342 aa8.16□□□□□ -1.1
LIG3-202ENST00000378526 CLDN34H7C241 214 aa8.16□□□□□ -1.1
LIG3-202ENST00000378526 RAB27BO00194 218 aa8.16□□□□□ -1.1
LIG3-202ENST00000378526 OR2J2O76002 312 aa8.16□□□□□ -1.1
LIG3-202ENST00000378526 COX5AP20674 150 aa8.16□□□□□ -1.1
LIG3-202ENST00000378526 RPS12P25398 132 aaKnown RBP8.16□□□□□ -1.1
LIG3-202ENST00000378526 PLEKHS1Q5SXH7 462 aa8.16□□□□□ -1.1
LIG3-202ENST00000378526 AMIGO3Q86WK7 504 aa8.16□□□□□ -1.1
LIG3-202ENST00000378526 TMEM163Q8TC26 289 aa8.16□□□□□ -1.1
LIG3-202ENST00000378526 UBTD2Q8WUN7 234 aa8.16□□□□□ -1.1
LIG3-202ENST00000378526 SGPP1Q9BX95 441 aa8.16□□□□□ -1.1
LIG3-202ENST00000378526 MTHFD2LQ9H903 347 aaPredicted RBP8.16□□□□□ -1.1
LIG3-202ENST00000378526 SNX11Q9Y5W9 270 aa8.16□□□□□ -1.1
LIG3-202ENST00000378526 A0A1W2PN81 502 aa8.16□□□□□ -1.1
LIG3-202ENST00000378526 LOC730098B7Z3J9 87 aa8.16□□□□□ -1.1
LIG3-202ENST00000378526 SLC16A5O15375 505 aa8.16□□□□□ -1.1
LIG3-202ENST00000378526 NUDT21O43809 227 aaKnown RBP8.16□□□□□ -1.1
LIG3-202ENST00000378526 ATP1B2P14415 290 aaPredicted RBP8.16□□□□□ -1.1
LIG3-202ENST00000378526 CHRNA7P36544 502 aa8.16□□□□□ -1.1
LIG3-202ENST00000378526 SLC14A2Q15849 920 aa8.16□□□□□ -1.1
LIG3-202ENST00000378526 ZNF429Q86V71 674 aa8.16□□□□□ -1.1
LIG3-202ENST00000378526 KCNG3Q8TAE7 436 aa8.16□□□□□ -1.1
LIG3-202ENST00000378526 ZNF160Q9HCG1 818 aa8.16□□□□□ -1.1
LIG3-202ENST00000378526 LANCL2Q9NS86 450 aa8.16□□□□□ -1.1
LIG3-202ENST00000378526 LOC100289279A0A1B0GTE1 492 aa8.16□□□□□ -1.1
LIG3-202ENST00000378526 TIA1P31483 386 aaKnown RBP eCLIP8.16□□□□□ -1.1
LIG3-202ENST00000378526 CEBPAP49715 358 aaPredicted RBP8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms