RNA–Protein interactions for RNA: ENST00000374730.2

USP48-202, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 570 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-202ENST00000374730 IGKV2D-30A0A075B6S6 120 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 KIR2DS5A0A0G2JLQ3 304 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 A0A0G2JNG1 304 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 A0A0J9YY10 115 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 HSFX4A0A1B0GTS1 333 aaPredicted RBP4.36□□□□□ -1.71
USP48-202ENST00000374730 HSFX3A0A1B0GWH4 333 aaPredicted RBP4.36□□□□□ -1.71
USP48-202ENST00000374730 SLC22A23A1A5C7 686 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 HMX3A6NHT5 357 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 FAM90A8PA6NJQ4 464 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 CPSF4LA6NMK7 179 aaKnown RBP4.36□□□□□ -1.71
USP48-202ENST00000374730 OR5K4A6NMS3 321 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 C2orf74A8MZ97 194 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 B4DGG1 531 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 KIR2DS3K7RE56 304 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 PRYO14603 147 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 SURF4O15260 269 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 CTSVO60911 334 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 SOX30O94993 753 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 IL1AP01583 271 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 IGLV3-19P01714 112 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 CRYABP02511 175 aaKnown RBP4.36□□□□□ -1.71
USP48-202ENST00000374730 ATP1B1P05026 303 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 HMGN1P05114 100 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 DBIP07108 87 aaKnown RBP4.36□□□□□ -1.71
USP48-202ENST00000374730 CSF1P09603 554 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 FAM90A13PP0C7W8 464 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 FAM90A24PP0C7X0 464 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 CPMP14384 443 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 AKT2P31751 481 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 NUDT1P36639 197 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 SOX3P41225 446 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 MAP3K8P41279 467 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 RABIFP47224 123 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 MTNR1AP48039 350 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 THBS3P49746 956 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 ZNF136P52737 540 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 WNT4P56705 351 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 DEFA1P59665 94 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 DEFA3P59666 94 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 SRP54P61011 504 aaKnown RBP4.36□□□□□ -1.71
USP48-202ENST00000374730 ARF3P61204 181 aaPredicted RBP4.36□□□□□ -1.71
USP48-202ENST00000374730 ARF1P84077 181 aaKnown RBP4.36□□□□□ -1.71
USP48-202ENST00000374730 ACSM1Q08AH1 577 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 ILF3Q12906 894 aaKnown RBP eCLIP4.36□□□□□ -1.71
USP48-202ENST00000374730 RUNX2Q13950 521 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 GPR18Q14330 331 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 KIR2DS5Q14953 304 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 SNAPC1Q16533 368 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 DUSP5Q16690 384 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 ALG11Q2TAA5 492 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 PGGHGQ32M88 737 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 PLK5Q496M5 336 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 DEFB134Q4QY38 66 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 SPANXN2Q5MJ10 180 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 EOGTQ5NDL2 527 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 AADACL4Q5VUY2 407 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 FIGLAQ6QHK4 219 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 KIAA1324Q6UXG2 1013 aaKnown RBP4.36□□□□□ -1.71
USP48-202ENST00000374730 ZNF730Q6ZMV8 503 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 ZNF836Q6ZNA1 936 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 ZNF620Q6ZNG0 422 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 RAB11FIP2Q7L804 512 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 ABI3BPQ7Z7G0 1075 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 TRIM73Q86UV7 250 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 SLC22A16Q86VW1 577 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 SNX29P2Q8IUI4 249 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 CCDC28AQ8IWP9 274 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 PHC2Q8IXK0 858 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 PEX5LQ8IYB4 626 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 RNF113BQ8IZP6 322 aaKnown RBP4.36□□□□□ -1.71
USP48-202ENST00000374730 CADM3Q8N126 398 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 ZNF619Q8N2I2 560 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 PARP16Q8N5Y8 322 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 CDRT4Q8N9R6 151 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 ZNF485Q8NCK3 441 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 OR52L2PQ8NGH6 319 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 OR4Q3Q8NH05 313 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 CCL4L1Q8NHW4 92 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 SETD6Q8TBK2 473 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 ZCCHC10Q8TBK6 192 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 KAT2AQ92830 837 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 CDS1Q92903 461 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 TSACCQ96A04 125 aaPredicted RBP4.36□□□□□ -1.71
USP48-202ENST00000374730 RNFT2Q96EX2 444 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 SLC41A3Q96GZ6 507 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 MSANTD3Q96H12 275 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 ZNF845Q96IR2 970 aaPredicted RBP4.36□□□□□ -1.71
USP48-202ENST00000374730 TXNDC15Q96J42 360 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 LYZL4Q96KX0 146 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 FAM210AQ96ND0 272 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 SDF2Q99470 211 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 MCHR1Q99705 422 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 COQ7Q99807 217 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 MED18Q9BUE0 208 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 SCNM1Q9BWG6 230 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 GSDMCQ9BYG8 508 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 FAM234AQ9H0X4 552 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 GHITMQ9H3K2 345 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 PIGUQ9H490 435 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 C6orf106Q9H6K1 298 aaPredicted RBP4.36□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms