RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 ZNF586Q9NXT0 402 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 TRAV19A0A0A6YYK7 116 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 SDC3O75056 442 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 GLAP06280 429 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 HOXB5P09067 269 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 FURINP09958 794 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 ADH5P11766 374 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 LAP3P28838 519 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 BMP8BP34820 402 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 BMP8AQ7Z5Y6 402 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 S100A7AQ86SG5 101 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 TRAPPC6BQ86SZ2 158 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 KLHDC1Q8N7A1 406 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 C15orf54Q8N8G6 183 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 STEAP2Q8NFT2 490 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 RAB7BQ96AH8 199 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 ECHDC3Q96DC8 303 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 C1QTNF2Q9BXJ5 285 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 PCED1AQ9H1Q7 454 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 SPACA1Q9HBV2 294 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 ING1Q9UK53 422 aaPredicted RBP5.95□□□□□ -1.46
VPS35-201ENST00000299138 SLC35A3Q9Y2D2 325 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 TRAV18A0A075B6X5 111 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 TRBV2A0A0J9YWF9 115 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 OR2M5A3KFT3 312 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 BLACEA4D250 179 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 C5orf52A6NGY3 159 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 GRXCR1A8MXD5 290 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 TOX3O15405 576 aaPredicted RBP5.95□□□□□ -1.46
VPS35-201ENST00000299138 EMC8O43402 210 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 RPL17P18621 184 aaKnown RBP5.95□□□□□ -1.46
VPS35-201ENST00000299138 MPGP29372 298 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 THBS3P49746 956 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 FLT3LGP49771 235 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 WNT3P56703 355 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 ARG2P78540 354 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 HSD11B2P80365 405 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 IL10RAQ13651 578 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 ZNF239Q16600 458 aaKnown RBP5.95□□□□□ -1.46
VPS35-201ENST00000299138 SYT14P1Q58G82 188 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 FAM209AQ5JX71 171 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 NXPE4Q6UWF7 544 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 SLCO4C1Q6ZQN7 724 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 C22orf15Q8WYQ4 148 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 FAM46BQ96A09 425 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 RAB3CQ96E17 227 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 CD180Q99467 661 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 SLC25A21Q9BQT8 299 aaPredicted RBP5.95□□□□□ -1.46
VPS35-201ENST00000299138 URM1Q9BTM9 101 aaKnown RBP5.95□□□□□ -1.46
VPS35-201ENST00000299138 SOX21Q9Y651 276 aaPredicted RBP5.95□□□□□ -1.46
VPS35-201ENST00000299138 MYO10Q9HD67 2058 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 PSME4Q14997 1843 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 OR6C68A6NDL8 312 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 ZNF840PA6NDX5 716 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 A6NIN4 97 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 TRAPPC6AO75865 159 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 SULT1A3P0DMM9 295 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 SULT1A4P0DMN0 295 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 NQO2P16083 231 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 TNFRSF17Q02223 184 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 OPCMLQ14982 345 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 ETFDHQ16134 617 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 SSX1Q16384 188 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 PGGHGQ32M88 737 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 SLC35D3Q5M8T2 416 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 FBXW12Q6X9E4 464 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 TMUB2Q71RG4 321 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 BTLAQ7Z6A9 289 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 LRP11Q86VZ4 500 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 NAGSQ8N159 534 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 DNAJC5GQ8N7S2 189 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 C19orf47Q8N9M1 422 aaKnown RBP5.95□□□□□ -1.46
VPS35-201ENST00000299138 OR6K2Q8NGY2 324 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 OR51Q1Q8NH59 317 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 FNDC9Q8TBE3 224 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 TMEM169Q96HH4 297 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 PARP12Q9H0J9 701 aaKnown RBP5.95□□□□□ -1.46
VPS35-201ENST00000299138 MEPEQ9NQ76 525 aaPredicted RBP5.95□□□□□ -1.46
VPS35-201ENST00000299138 MTCH1Q9NZJ7 389 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 PRELID3BQ9Y3B1 194 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 PPP5D1E7EU14 171 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 P2RX6O15547 441 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 S1PR1P21453 382 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 KIR2DL3P43628 341 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 PRLHRP49683 370 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 IL13RA1P78552 427 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 GLO1Q04760 184 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 SQSTM1Q13501 440 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 C22orf39Q6P5X5 142 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 TMEM220Q6QAJ8 160 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 COMMD6Q7Z4G1 85 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 TMEM150AQ86TG1 271 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 AMZ2Q86W34 360 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 LAX1Q8IWV1 398 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 RBMXL3Q8N7X1 1067 aaKnown RBP5.95□□□□□ -1.46
VPS35-201ENST00000299138 CCDC71LQ8N9Z2 235 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 BPIFCQ8NFQ6 507 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 SLC39A7Q92504 469 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 APIPQ96GX9 242 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 TMEM19Q96HH6 336 aa5.95□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms