RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 B8ZZF3 427 aa12.82□□□□□ -0.36
UPF1-211ENST00000600868 MS4A18H0YCH9 400 aa12.82□□□□□ -0.36
UPF1-211ENST00000600868 BLOC1S5-TXNDC5H3BN57 136 aa12.82□□□□□ -0.36
UPF1-211ENST00000600868 CYTIPO60759 359 aa12.82□□□□□ -0.36
UPF1-211ENST00000600868 VAMP5O95183 116 aa12.82□□□□□ -0.36
UPF1-211ENST00000600868 OR6A2O95222 327 aa12.82□□□□□ -0.36
UPF1-211ENST00000600868 ADORA3P0DMS8 318 aa12.82□□□□□ -0.36
UPF1-211ENST00000600868 OSMP13725 252 aa12.82□□□□□ -0.36
UPF1-211ENST00000600868 ZNF26P17031 533 aaPredicted RBP12.82□□□□□ -0.36
UPF1-211ENST00000600868 IGFBP5P24593 272 aa12.82□□□□□ -0.36
UPF1-211ENST00000600868 FXYD6P3P58550 94 aa12.82□□□□□ -0.36
UPF1-211ENST00000600868 PRPS1P60891 318 aa12.82□□□□□ -0.36
UPF1-211ENST00000600868 PUDPQ08623 228 aa12.82□□□□□ -0.36
UPF1-211ENST00000600868 LRRC36Q1X8D7 754 aa12.82□□□□□ -0.36
UPF1-211ENST00000600868 MS4A18Q3C1V0 323 aa12.82□□□□□ -0.36
UPF1-211ENST00000600868 ACSF3Q4G176 576 aaPredicted RBP12.82□□□□□ -0.36
UPF1-211ENST00000600868 SOWAHCQ53LP3 525 aaPredicted RBP12.82□□□□□ -0.36
UPF1-211ENST00000600868 NSUN5P2Q63ZY6 315 aa12.82□□□□□ -0.36
UPF1-211ENST00000600868 KIF18BQ86Y91 864 aa12.82□□□□□ -0.36
UPF1-211ENST00000600868 CCDC103Q8IW40 242 aa12.82□□□□□ -0.36
UPF1-211ENST00000600868 FNDC9Q8TBE3 224 aa12.82□□□□□ -0.36
UPF1-211ENST00000600868 MAGEE2Q8TD90 523 aaPredicted RBP12.82□□□□□ -0.36
UPF1-211ENST00000600868 RNF128Q8TEB7 428 aa12.82□□□□□ -0.36
UPF1-211ENST00000600868 ROBO4Q8WZ75 1007 aa12.82□□□□□ -0.36
UPF1-211ENST00000600868 SF3B5Q9BWJ5 86 aaKnown RBP12.82□□□□□ -0.36
UPF1-211ENST00000600868 NDEL1Q9GZM8 345 aa12.82□□□□□ -0.36
UPF1-211ENST00000600868 TP63Q9H3D4 680 aaPredicted RBP12.82□□□□□ -0.36
UPF1-211ENST00000600868 REV1Q9UBZ9 1251 aa12.82□□□□□ -0.36
UPF1-211ENST00000600868 ENOPH1Q9UHY7 261 aa12.82□□□□□ -0.36
UPF1-211ENST00000600868 CDH10Q9Y6N8 788 aa12.82□□□□□ -0.36
UPF1-211ENST00000600868 KALRNO60229 2985 aa12.82□□□□□ -0.36
UPF1-211ENST00000600868 ZFYVE26Q68DK2 2539 aa12.81□□□□□ -0.36
UPF1-211ENST00000600868 IGHV3-15A0A0B4J1V0 119 aa12.81□□□□□ -0.36
UPF1-211ENST00000600868 RAMP1O60894 148 aa12.81□□□□□ -0.36
UPF1-211ENST00000600868 NDUFB2O95178 105 aa12.81□□□□□ -0.36
UPF1-211ENST00000600868 TGM6O95932 706 aa12.81□□□□□ -0.36
UPF1-211ENST00000600868 TP53P04637 393 aaPredicted RBP12.81□□□□□ -0.36
UPF1-211ENST00000600868 FCGR2AP12318 317 aa12.81□□□□□ -0.36
UPF1-211ENST00000600868 KLK2P20151 261 aa12.81□□□□□ -0.36
UPF1-211ENST00000600868 ACVR2AP27037 513 aa12.81□□□□□ -0.36
UPF1-211ENST00000600868 AQP2P41181 271 aa12.81□□□□□ -0.36
UPF1-211ENST00000600868 PTDSS1P48651 473 aaKnown RBP12.81□□□□□ -0.36
UPF1-211ENST00000600868 RAD23AP54725 363 aa12.81□□□□□ -0.36
UPF1-211ENST00000600868 RPL18Q07020 188 aaKnown RBP12.81□□□□□ -0.36
UPF1-211ENST00000600868 PDK3Q15120 406 aa12.81□□□□□ -0.36
UPF1-211ENST00000600868 POU4F3Q15319 338 aa12.81□□□□□ -0.36
UPF1-211ENST00000600868 RFX4Q33E94 735 aa12.81□□□□□ -0.36
UPF1-211ENST00000600868 C1orf185Q5T7R7 199 aa12.81□□□□□ -0.36
UPF1-211ENST00000600868 GTF2IRD2BQ6EKJ0 949 aa12.81□□□□□ -0.36
UPF1-211ENST00000600868 TMEM225Q6GV28 225 aa12.81□□□□□ -0.36
UPF1-211ENST00000600868 ABLIM2Q6H8Q1 611 aa12.81□□□□□ -0.36
UPF1-211ENST00000600868 RTL6Q6ICC9 239 aa12.81□□□□□ -0.36
UPF1-211ENST00000600868 SMARCD3Q6STE5 483 aa12.81□□□□□ -0.36
UPF1-211ENST00000600868 PXKQ7Z7A4 578 aa12.81□□□□□ -0.36
UPF1-211ENST00000600868 GTF2IRD2Q86UP8 949 aa12.81□□□□□ -0.36
UPF1-211ENST00000600868 DOLPP1Q86YN1 238 aa12.81□□□□□ -0.36
UPF1-211ENST00000600868 ZNF843Q8N446 348 aa12.81□□□□□ -0.36
UPF1-211ENST00000600868 LRRC75AQ8NAA5 344 aa12.81□□□□□ -0.36
UPF1-211ENST00000600868 MOSPD2Q8NHP6 518 aa12.81□□□□□ -0.36
UPF1-211ENST00000600868 FANK1Q8TC84 345 aa12.81□□□□□ -0.36
UPF1-211ENST00000600868 WNT2BQ93097 391 aa12.81□□□□□ -0.36
UPF1-211ENST00000600868 OXGR1Q96P68 337 aa12.81□□□□□ -0.36
UPF1-211ENST00000600868 TRIB1Q96RU8 372 aa12.81□□□□□ -0.36
UPF1-211ENST00000600868 GPX7Q96SL4 187 aaPredicted RBP12.81□□□□□ -0.36
UPF1-211ENST00000600868 PRRG4Q9BZD6 226 aa12.81□□□□□ -0.36
UPF1-211ENST00000600868 VCXQ9H320 206 aa12.81□□□□□ -0.36
UPF1-211ENST00000600868 VCX3BQ9H321 246 aa12.81□□□□□ -0.36
UPF1-211ENST00000600868 OR52D1Q9H346 318 aa12.81□□□□□ -0.36
UPF1-211ENST00000600868 B3GAT1Q9P2W7 334 aa12.81□□□□□ -0.36
UPF1-211ENST00000600868 ORC6Q9Y5N6 252 aa12.81□□□□□ -0.36
UPF1-211ENST00000600868 ZGRF1Q86YA3 2104 aa12.8□□□□□ -0.36
UPF1-211ENST00000600868 IGKV3D-15A0A087WSY6 115 aa12.8□□□□□ -0.36
UPF1-211ENST00000600868 ZNF716A6NP11 495 aa12.8□□□□□ -0.36
UPF1-211ENST00000600868 RNF13O43567 381 aa12.8□□□□□ -0.36
UPF1-211ENST00000600868 MITFO75030 526 aaPredicted RBP12.8□□□□□ -0.36
UPF1-211ENST00000600868 C1QL1O75973 258 aa12.8□□□□□ -0.36
UPF1-211ENST00000600868 AQP8O94778 261 aa12.8□□□□□ -0.36
UPF1-211ENST00000600868 PRB1P04280 392 aa12.8□□□□□ -0.36
UPF1-211ENST00000600868 CDH2P19022 906 aaPredicted RBP12.8□□□□□ -0.36
UPF1-211ENST00000600868 AHCYP23526 432 aa12.8□□□□□ -0.36
UPF1-211ENST00000600868 SLC16A1P53985 500 aa12.8□□□□□ -0.36
UPF1-211ENST00000600868 ESRRGP62508 458 aa12.8□□□□□ -0.36
UPF1-211ENST00000600868 TLE1Q04724 770 aa12.8□□□□□ -0.36
UPF1-211ENST00000600868 RASGEF1BQ0VAM2 473 aa12.8□□□□□ -0.36
UPF1-211ENST00000600868 SLC17A1Q14916 467 aa12.8□□□□□ -0.36
UPF1-211ENST00000600868 RNPS1Q15287 305 aaKnown RBP12.8□□□□□ -0.36
UPF1-211ENST00000600868 SLC36A3Q495N2 470 aa12.8□□□□□ -0.36
UPF1-211ENST00000600868 ALG10Q5BKT4 473 aa12.8□□□□□ -0.36
UPF1-211ENST00000600868 THSD4Q6ZMP0 1018 aa12.8□□□□□ -0.36
UPF1-211ENST00000600868 GALNT5Q7Z7M9 940 aa12.8□□□□□ -0.36
UPF1-211ENST00000600868 GALNT4Q8N4A0 578 aa12.8□□□□□ -0.36
UPF1-211ENST00000600868 ANKK1Q8NFD2 765 aa12.8□□□□□ -0.36
UPF1-211ENST00000600868 SAMD8Q96LT4 415 aa12.8□□□□□ -0.36
UPF1-211ENST00000600868 RDH12Q96NR8 316 aa12.8□□□□□ -0.36
UPF1-211ENST00000600868 GABARAPL3Q9BY60 117 aa12.8□□□□□ -0.36
UPF1-211ENST00000600868 EGLN3Q9H6Z9 239 aa12.8□□□□□ -0.36
UPF1-211ENST00000600868 RNF122Q9H9V4 155 aa12.8□□□□□ -0.36
UPF1-211ENST00000600868 GP6Q9HCN6 339 aa12.8□□□□□ -0.36
UPF1-211ENST00000600868 INIPQ9NRY2 104 aa12.8□□□□□ -0.36
UPF1-211ENST00000600868 KLHL9Q9P2J3 617 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms