RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 APEHP13798 732 aaKnown RBP9.62□□□□□ -0.87
SS18-213ENST00000579640 ENPP1P22413 925 aa9.62□□□□□ -0.87
SS18-213ENST00000579640 RPL4P36578 427 aaKnown RBP9.62□□□□□ -0.87
SS18-213ENST00000579640 POLR2IP36954 125 aaKnown RBP9.62□□□□□ -0.87
SS18-213ENST00000579640 H3F3AP84243 136 aa9.62□□□□□ -0.87
SS18-213ENST00000579640 CDK5Q00535 292 aa9.62□□□□□ -0.87
SS18-213ENST00000579640 PUDPQ08623 228 aa9.62□□□□□ -0.87
SS18-213ENST00000579640 GINS1Q14691 196 aa9.62□□□□□ -0.87
SS18-213ENST00000579640 SLX4IPQ5VYV7 408 aa9.62□□□□□ -0.87
SS18-213ENST00000579640 CISD2Q8N5K1 135 aaKnown RBP9.62□□□□□ -0.87
SS18-213ENST00000579640 LRRC75AQ8NAA5 344 aa9.62□□□□□ -0.87
SS18-213ENST00000579640 ANKK1Q8NFD2 765 aa9.62□□□□□ -0.87
SS18-213ENST00000579640 OR8D4Q8NGM9 314 aa9.62□□□□□ -0.87
SS18-213ENST00000579640 RELTQ969Z4 430 aa9.62□□□□□ -0.87
SS18-213ENST00000579640 APOL4Q9BPW4 351 aa9.62□□□□□ -0.87
SS18-213ENST00000579640 IFT27Q9BW83 186 aa9.62□□□□□ -0.87
SS18-213ENST00000579640 INIPQ9NRY2 104 aa9.62□□□□□ -0.87
SS18-213ENST00000579640 TAS2R5Q9NYW4 299 aa9.62□□□□□ -0.87
SS18-213ENST00000579640 LRRC42Q9Y546 428 aa9.62□□□□□ -0.87
SS18-213ENST00000579640 GMPPBQ9Y5P6 360 aa9.62□□□□□ -0.87
SS18-213ENST00000579640 CACNA1BQ00975 2339 aa9.62□□□□□ -0.87
SS18-213ENST00000579640 ZNF407Q9C0G0 2248 aa9.62□□□□□ -0.87
SS18-213ENST00000579640 MED12Q93074 2177 aa9.62□□□□□ -0.87
SS18-213ENST00000579640 A0A1B0GTH9 108 aa9.61□□□□□ -0.87
SS18-213ENST00000579640 NPIPB13A6NJU9 1138 aa9.61□□□□□ -0.87
SS18-213ENST00000579640 NPIPB4C9JG80 1138 aa9.61□□□□□ -0.87
SS18-213ENST00000579640 H0YC42 278 aa9.61□□□□□ -0.87
SS18-213ENST00000579640 IMPA2O14732 288 aa9.61□□□□□ -0.87
SS18-213ENST00000579640 ARPC3O15145 178 aa9.61□□□□□ -0.87
SS18-213ENST00000579640 RNF13O43567 381 aa9.61□□□□□ -0.87
SS18-213ENST00000579640 IDH3BO43837 385 aa9.61□□□□□ -0.87
SS18-213ENST00000579640 SYNGR4O95473 234 aa9.61□□□□□ -0.87
SS18-213ENST00000579640 HMGN1P05114 100 aa9.61□□□□□ -0.87
SS18-213ENST00000579640 CD14P08571 375 aa9.61□□□□□ -0.87
SS18-213ENST00000579640 IGFBP1P08833 259 aaPredicted RBP9.61□□□□□ -0.87
SS18-213ENST00000579640 EPHA2P29317 976 aa9.61□□□□□ -0.87
SS18-213ENST00000579640 GRK5P34947 590 aa9.61□□□□□ -0.87
SS18-213ENST00000579640 GGT2P36268 569 aa9.61□□□□□ -0.87
SS18-213ENST00000579640 P2RY4P51582 365 aa9.61□□□□□ -0.87
SS18-213ENST00000579640 TPD52P55327 224 aaPredicted RBP9.61□□□□□ -0.87
SS18-213ENST00000579640 CDC42P60953 191 aa9.61□□□□□ -0.87
SS18-213ENST00000579640 SRYQ05066 204 aa9.61□□□□□ -0.87
SS18-213ENST00000579640 SF3B4Q15427 424 aaKnown RBP eCLIP9.61□□□□□ -0.874e-8■■■□□ 18.5
SS18-213ENST00000579640 PGGHGQ32M88 737 aa9.61□□□□□ -0.87
SS18-213ENST00000579640 CLEC12AQ5QGZ9 265 aa9.61□□□□□ -0.87
SS18-213ENST00000579640 C6orf52Q5T4I8 152 aa9.61□□□□□ -0.87
SS18-213ENST00000579640 CASP12Q6UXS9 341 aa9.61□□□□□ -0.87
SS18-213ENST00000579640 THSD4Q6ZMP0 1018 aa9.61□□□□□ -0.87
SS18-213ENST00000579640 PXKQ7Z7A4 578 aa9.61□□□□□ -0.87
SS18-213ENST00000579640 DEPDC4Q8N2C3 294 aa9.61□□□□□ -0.87
SS18-213ENST00000579640 LNX2Q8N448 690 aa9.61□□□□□ -0.87
SS18-213ENST00000579640 TMEM99Q8N816 258 aa9.61□□□□□ -0.87
SS18-213ENST00000579640 SETD9Q8NE22 299 aa9.61□□□□□ -0.87
SS18-213ENST00000579640 MOSPD2Q8NHP6 518 aa9.61□□□□□ -0.87
SS18-213ENST00000579640 SNRNP40Q96DI7 357 aaKnown RBP9.61□□□□□ -0.87
SS18-213ENST00000579640 OXGR1Q96P68 337 aa9.61□□□□□ -0.87
SS18-213ENST00000579640 SLC38A2Q96QD8 506 aa9.61□□□□□ -0.87
SS18-213ENST00000579640 SLX1AQ9BQ83 275 aa9.61□□□□□ -0.87
SS18-213ENST00000579640 SF3B5Q9BWJ5 86 aaKnown RBP9.61□□□□□ -0.87
SS18-213ENST00000579640 SRXN1Q9BYN0 137 aa9.61□□□□□ -0.87
SS18-213ENST00000579640 NRIP3Q9NQ35 241 aa9.61□□□□□ -0.87
SS18-213ENST00000579640 MCTS1Q9ULC4 181 aaKnown RBP9.61□□□□□ -0.87
SS18-213ENST00000579640 CAMK2AQ9UQM7 478 aa9.61□□□□□ -0.87
SS18-213ENST00000579640 NOX1Q9Y5S8 564 aa9.61□□□□□ -0.87
SS18-213ENST00000579640 HSPE1-MOB4S4R3N1 261 aa9.61□□□□□ -0.87
SS18-213ENST00000579640 DNAJC13O75165 2243 aa9.61□□□□□ -0.87
SS18-213ENST00000579640 KIAA1549Q9HCM3 1950 aa9.61□□□□□ -0.87
SS18-213ENST00000579640 A0A1W2PRG6 482 aa9.61□□□□□ -0.87
SS18-213ENST00000579640 MCIDASD6RGH6 385 aa9.61□□□□□ -0.87
SS18-213ENST00000579640 MS4A18H0YCH9 400 aa9.61□□□□□ -0.87
SS18-213ENST00000579640 BHLHE40O14503 412 aa9.61□□□□□ -0.87
SS18-213ENST00000579640 DENRO43583 198 aaKnown RBP9.61□□□□□ -0.87
SS18-213ENST00000579640 IGHMP01871 453 aa9.61□□□□□ -0.87
SS18-213ENST00000579640 ACADSP16219 412 aa9.61□□□□□ -0.87
SS18-213ENST00000579640 AHCYP23526 432 aa9.61□□□□□ -0.87
SS18-213ENST00000579640 TDGF1P3P51864 188 aa9.61□□□□□ -0.87
SS18-213ENST00000579640 CTXN1P60606 82 aa9.61□□□□□ -0.87
SS18-213ENST00000579640 LY6DQ14210 128 aa9.61□□□□□ -0.87
SS18-213ENST00000579640 POU4F3Q15319 338 aa9.61□□□□□ -0.87
SS18-213ENST00000579640 MS4A18Q3C1V0 323 aa9.61□□□□□ -0.87
SS18-213ENST00000579640 GXYLT1Q4G148 440 aa9.61□□□□□ -0.87
SS18-213ENST00000579640 EMC4Q5J8M3 183 aa9.61□□□□□ -0.87
SS18-213ENST00000579640 C12orf73Q69YU5 71 aa9.61□□□□□ -0.87
SS18-213ENST00000579640 GPR139Q6DWJ6 353 aa9.61□□□□□ -0.87
SS18-213ENST00000579640 TMEM225Q6GV28 225 aa9.61□□□□□ -0.87
SS18-213ENST00000579640 PCSK4Q6UW60 755 aa9.61□□□□□ -0.87
SS18-213ENST00000579640 USP51Q70EK9 711 aa9.61□□□□□ -0.87
SS18-213ENST00000579640 LSM14AQ8ND56 463 aaKnown RBP9.61□□□□□ -0.87
SS18-213ENST00000579640 ZPLD1Q8TCW7 415 aa9.61□□□□□ -0.87
SS18-213ENST00000579640 ANKRD60Q9BZ19 345 aa9.61□□□□□ -0.87
SS18-213ENST00000579640 SEC14L4Q9UDX3 406 aa9.61□□□□□ -0.87
SS18-213ENST00000579640 ZNF175Q9Y473 711 aa9.61□□□□□ -0.87
SS18-213ENST00000579640 AHRRA9YTQ3 701 aa9.6□□□□□ -0.87
SS18-213ENST00000579640 NPIPA2E9PIF3 369 aa9.6□□□□□ -0.87
SS18-213ENST00000579640 C11orf98E9PRG8 122 aa9.6□□□□□ -0.87
SS18-213ENST00000579640 NPIPA3F8WFD2 350 aa9.6□□□□□ -0.87
SS18-213ENST00000579640 SMAD9O15198 467 aaKnown RBP9.6□□□□□ -0.87
SS18-213ENST00000579640 MPZL2O60487 215 aa9.6□□□□□ -0.87
SS18-213ENST00000579640 PPP1R3DO95685 299 aa9.6□□□□□ -0.87
SS18-213ENST00000579640 TXNDC12O95881 172 aa9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 76.4 ms