RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 CMIPQ8IY22 773 aa15.32■□□□□ 0.04
CLK3-227ENST00000570296 OIT3Q8WWZ8 545 aa15.32■□□□□ 0.04
CLK3-227ENST00000570296 CCT7Q99832 543 aa15.32■□□□□ 0.04
CLK3-227ENST00000570296 SLC30A2Q9BRI3 323 aa15.32■□□□□ 0.04
CLK3-227ENST00000570296 TCF7L1Q9HCS4 588 aa15.32■□□□□ 0.04
CLK3-227ENST00000570296 RRAGDQ9NQL2 400 aaPredicted RBP15.32■□□□□ 0.04
CLK3-227ENST00000570296 RNF114Q9Y508 228 aa15.32■□□□□ 0.04
CLK3-227ENST00000570296 LIPT2A6NK58 231 aa15.31■□□□□ 0.04
CLK3-227ENST00000570296 STX11O75558 287 aa15.31■□□□□ 0.04
CLK3-227ENST00000570296 AK1P00568 194 aa15.31■□□□□ 0.04
CLK3-227ENST00000570296 IGHMP01871 453 aa15.31■□□□□ 0.04
CLK3-227ENST00000570296 EFNA1P20827 205 aaPredicted RBP15.31■□□□□ 0.04
CLK3-227ENST00000570296 CCT3P49368 545 aaKnown RBP15.31■□□□□ 0.04
CLK3-227ENST00000570296 POLR2HP52434 150 aaKnown RBP15.31■□□□□ 0.04
CLK3-227ENST00000570296 GALK2Q01415 458 aa15.31■□□□□ 0.04
CLK3-227ENST00000570296 AP1ARQ63HQ0 302 aa15.31■□□□□ 0.04
CLK3-227ENST00000570296 OR7D2Q96RA2 312 aa15.31■□□□□ 0.04
CLK3-227ENST00000570296 EXOSC3Q9NQT5 275 aaKnown RBP15.31■□□□□ 0.04
CLK3-227ENST00000570296 B3GNT2Q9NY97 397 aa15.31■□□□□ 0.04
CLK3-227ENST00000570296 SEC14L4Q9UDX3 406 aa15.31■□□□□ 0.04
CLK3-227ENST00000570296 OSGIN1Q9UJX0 560 aa15.31■□□□□ 0.04
CLK3-227ENST00000570296 ZC3H12DA2A288 527 aaKnown RBP15.3■□□□□ 0.04
CLK3-227ENST00000570296 AGAP5A6NIR3 686 aa15.3■□□□□ 0.04
CLK3-227ENST00000570296 SRRM5B3KS81 715 aa15.3■□□□□ 0.04
CLK3-227ENST00000570296 FCMRO60667 390 aa15.3■□□□□ 0.04
CLK3-227ENST00000570296 BCAS1O75363 584 aaPredicted RBP15.3■□□□□ 0.04
CLK3-227ENST00000570296 SEC22BO75396 215 aa15.3■□□□□ 0.04
CLK3-227ENST00000570296 ERLIN1O75477 346 aa15.3■□□□□ 0.04
CLK3-227ENST00000570296 ZNF14P17017 642 aaPredicted RBP15.3■□□□□ 0.04
CLK3-227ENST00000570296 TAC1P20366 129 aa15.3■□□□□ 0.04
CLK3-227ENST00000570296 IMPDH1P20839 514 aa15.3■□□□□ 0.04
CLK3-227ENST00000570296 FOXA1P55317 472 aa15.3■□□□□ 0.04
CLK3-227ENST00000570296 CEACAM7Q14002 265 aa15.3■□□□□ 0.04
CLK3-227ENST00000570296 FIP1L1Q6UN15 594 aaKnown RBP15.3■□□□□ 0.04
CLK3-227ENST00000570296 USP51Q70EK9 711 aa15.3■□□□□ 0.04
CLK3-227ENST00000570296 SLC35F6Q8N357 371 aa15.3■□□□□ 0.04
CLK3-227ENST00000570296 OR52E2Q8NGJ4 325 aa15.3■□□□□ 0.04
CLK3-227ENST00000570296 PSMA8Q8TAA3 256 aa15.3■□□□□ 0.04
CLK3-227ENST00000570296 SNX33Q8WV41 574 aa15.3■□□□□ 0.04
CLK3-227ENST00000570296 RYR2Q92736 4967 aa15.3■□□□□ 0.04
CLK3-227ENST00000570296 MTERF3Q96E29 417 aa15.3■□□□□ 0.04
CLK3-227ENST00000570296 KTI12Q96EK9 354 aaPredicted RBP15.3■□□□□ 0.04
CLK3-227ENST00000570296 MS4A3Q96HJ5 214 aa15.3■□□□□ 0.04
CLK3-227ENST00000570296 PRDM13Q9H4Q3 707 aa15.3■□□□□ 0.04
CLK3-227ENST00000570296 INSIG2Q9Y5U4 225 aa15.3■□□□□ 0.04
CLK3-227ENST00000570296 SLC22A23A1A5C7 686 aa15.29■□□□□ 0.04
CLK3-227ENST00000570296 TCP1P17987 556 aaKnown RBP15.29■□□□□ 0.04
CLK3-227ENST00000570296 PRPH2P23942 346 aa15.29■□□□□ 0.04
CLK3-227ENST00000570296 IDH2P48735 452 aaKnown RBP15.29■□□□□ 0.04
CLK3-227ENST00000570296 P2RY4P51582 365 aa15.29■□□□□ 0.04
CLK3-227ENST00000570296 SELENOVP59797 346 aa15.29■□□□□ 0.04
CLK3-227ENST00000570296 RPL15P61313 204 aaKnown RBP15.29■□□□□ 0.04
CLK3-227ENST00000570296 OR7A5Q15622 319 aa15.29■□□□□ 0.04
CLK3-227ENST00000570296 GSG1Q2KHT4 349 aa15.29■□□□□ 0.04
CLK3-227ENST00000570296 ALKBH6Q3KRA9 238 aa15.29■□□□□ 0.04
CLK3-227ENST00000570296 PRAMEF8Q5VWM4 474 aa15.29■□□□□ 0.04
CLK3-227ENST00000570296 PRAMEF7Q5VXH5 474 aa15.29■□□□□ 0.04
CLK3-227ENST00000570296 ZNF771Q7L3S4 317 aaPredicted RBP15.29■□□□□ 0.04
CLK3-227ENST00000570296 EPHX4Q8IUS5 362 aa15.29■□□□□ 0.04
CLK3-227ENST00000570296 PARP8Q8N3A8 854 aa15.29■□□□□ 0.04
CLK3-227ENST00000570296 MGARPQ8TDB4 240 aa15.29■□□□□ 0.04
CLK3-227ENST00000570296 MOAP1Q96BY2 351 aa15.29■□□□□ 0.04
CLK3-227ENST00000570296 TSSK3Q96PN8 268 aa15.29■□□□□ 0.04
CLK3-227ENST00000570296 ZNF350Q9GZX5 532 aa15.29■□□□□ 0.04
CLK3-227ENST00000570296 RASSF4Q9H2L5 321 aa15.29■□□□□ 0.04
CLK3-227ENST00000570296 DPH5Q9H2P9 285 aa15.29■□□□□ 0.04
CLK3-227ENST00000570296 GPR35Q9HC97 309 aa15.29■□□□□ 0.04
CLK3-227ENST00000570296 DECR2Q9NUI1 292 aa15.29■□□□□ 0.04
CLK3-227ENST00000570296 UBAP1Q9NZ09 502 aa15.29■□□□□ 0.04
CLK3-227ENST00000570296 TAAR3PQ9P1P4 343 aa15.29■□□□□ 0.04
CLK3-227ENST00000570296 ASH2LQ9UBL3 628 aa15.29■□□□□ 0.04
CLK3-227ENST00000570296 MKLN1Q9UL63 735 aa15.29■□□□□ 0.04
CLK3-227ENST00000570296 LOC100653049A0A140TA62 436 aa15.28■□□□□ 0.04
CLK3-227ENST00000570296 ISPDA4D126 451 aa15.28■□□□□ 0.04
CLK3-227ENST00000570296 TRAPPC2LH3BP13 241 aa15.28■□□□□ 0.04
CLK3-227ENST00000570296 KRT34O76011 436 aa15.28■□□□□ 0.04
CLK3-227ENST00000570296 PLATP00750 562 aa15.28■□□□□ 0.04
CLK3-227ENST00000570296 PPIAL4GP0DN37 164 aa15.28■□□□□ 0.04
CLK3-227ENST00000570296 IGHV4-38-2P0DP08 117 aa15.28■□□□□ 0.04
CLK3-227ENST00000570296 SDC1P18827 310 aa15.28■□□□□ 0.04
CLK3-227ENST00000570296 PROK1P58294 105 aa15.28■□□□□ 0.04
CLK3-227ENST00000570296 MAPK14Q16539 360 aa15.28■□□□□ 0.04
CLK3-227ENST00000570296 SPDYE7PQ495Y7 208 aa15.28■□□□□ 0.04
CLK3-227ENST00000570296 TEX35Q5T0J7 233 aa15.28■□□□□ 0.04
CLK3-227ENST00000570296 RUSC1-AS1Q66K80 236 aa15.28■□□□□ 0.04
CLK3-227ENST00000570296 ARFGAP2Q8N6H7 521 aa15.28■□□□□ 0.04
CLK3-227ENST00000570296 OR5D16Q8NGK9 328 aa15.28■□□□□ 0.04
CLK3-227ENST00000570296 SFXN5Q8TD22 340 aa15.28■□□□□ 0.04
CLK3-227ENST00000570296 ELMOD3Q96FG2 381 aa15.28■□□□□ 0.04
CLK3-227ENST00000570296 FCRL1Q96LA6 429 aa15.28■□□□□ 0.04
CLK3-227ENST00000570296 ZNF75AQ96N20 296 aa15.28■□□□□ 0.04
CLK3-227ENST00000570296 ERP44Q9BS26 406 aa15.28■□□□□ 0.04
CLK3-227ENST00000570296 GATA5Q9BWX5 397 aaPredicted RBP15.28■□□□□ 0.04
CLK3-227ENST00000570296 KCNF1Q9H3M0 494 aa15.28■□□□□ 0.04
CLK3-227ENST00000570296 SAP30LQ9HAJ7 183 aa15.28■□□□□ 0.04
CLK3-227ENST00000570296 MID1IP1Q9NPA3 183 aa15.28■□□□□ 0.04
CLK3-227ENST00000570296 SLC7A8Q9UHI5 535 aa15.28■□□□□ 0.04
CLK3-227ENST00000570296 RCE1Q9Y256 329 aa15.28■□□□□ 0.04
CLK3-227ENST00000570296 CCL27Q9Y4X3 112 aa15.28■□□□□ 0.04
CLK3-227ENST00000570296 SOX21Q9Y651 276 aaPredicted RBP15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms