RNA–Protein interactions for RNA: ENST00000566926.1

CLK3-218, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-218ENST00000566926 MPP4Q96JB8 637 aa12□□□□□ -0.49
CLK3-218ENST00000566926 RSPO3Q9BXY4 272 aaPredicted RBP12□□□□□ -0.49
CLK3-218ENST00000566926 GP6Q9HCN6 339 aa12□□□□□ -0.49
CLK3-218ENST00000566926 ELOVL5Q9NYP7 299 aa12□□□□□ -0.49
CLK3-218ENST00000566926 PROCRQ9UNN8 238 aa12□□□□□ -0.49
CLK3-218ENST00000566926 LRCH1Q9Y2L9 728 aa12□□□□□ -0.49
CLK3-218ENST00000566926 ABCA4P78363 2273 aa12□□□□□ -0.49
CLK3-218ENST00000566926 TEX15Q9BXT5 2789 aa12□□□□□ -0.49
CLK3-218ENST00000566926 DCHS2Q6V1P9 2916 aa11.99□□□□□ -0.49
CLK3-218ENST00000566926 CLDN24A6NM45 220 aa11.99□□□□□ -0.49
CLK3-218ENST00000566926 H0YAE9 185 aa11.99□□□□□ -0.49
CLK3-218ENST00000566926 J3KTA2 159 aa11.99□□□□□ -0.49
CLK3-218ENST00000566926 PDLIM1O00151 329 aa11.99□□□□□ -0.49
CLK3-218ENST00000566926 SS18L1O75177 396 aaPredicted RBP11.99□□□□□ -0.49
CLK3-218ENST00000566926 GOSR1O95249 250 aa11.99□□□□□ -0.49
CLK3-218ENST00000566926 ADAP00813 363 aa11.99□□□□□ -0.49
CLK3-218ENST00000566926 IGFBP5P24593 272 aa11.99□□□□□ -0.49
CLK3-218ENST00000566926 YAP1P46937 504 aaKnown RBP11.99□□□□□ -0.49
CLK3-218ENST00000566926 IDH2P48735 452 aaKnown RBP11.99□□□□□ -0.49
CLK3-218ENST00000566926 RPS6KA3P51812 740 aa11.99□□□□□ -0.49
CLK3-218ENST00000566926 IST1P53990 364 aa11.99□□□□□ -0.49
CLK3-218ENST00000566926 CSNK2A1P68400 391 aaPredicted RBP11.99□□□□□ -0.49
CLK3-218ENST00000566926 TAF11Q15544 211 aa11.99□□□□□ -0.49
CLK3-218ENST00000566926 ZNF239Q16600 458 aaKnown RBP11.99□□□□□ -0.49
CLK3-218ENST00000566926 FGD3Q5JSP0 725 aa11.99□□□□□ -0.49
CLK3-218ENST00000566926 VWA1Q6PCB0 445 aa11.99□□□□□ -0.49
CLK3-218ENST00000566926 BTLAQ7Z6A9 289 aa11.99□□□□□ -0.49
CLK3-218ENST00000566926 HMGN2P46Q86SG4 172 aa11.99□□□□□ -0.49
CLK3-218ENST00000566926 RBM45Q8IUH3 476 aaKnown RBP11.99□□□□□ -0.49
CLK3-218ENST00000566926 RNF113BQ8IZP6 322 aaKnown RBP11.99□□□□□ -0.49
CLK3-218ENST00000566926 ZHX1-C8orf76Q96EF9 292 aa11.99□□□□□ -0.49
CLK3-218ENST00000566926 HS6ST2Q96MM7 605 aa11.99□□□□□ -0.49
CLK3-218ENST00000566926 OR5B2Q96R09 309 aa11.99□□□□□ -0.49
CLK3-218ENST00000566926 SLC29A1Q99808 456 aa11.99□□□□□ -0.49
CLK3-218ENST00000566926 C12orf10Q9HB07 376 aa11.99□□□□□ -0.49
CLK3-218ENST00000566926 GALNT8Q9NY28 637 aa11.99□□□□□ -0.49
CLK3-218ENST00000566926 VNN3Q9NY84 501 aa11.99□□□□□ -0.49
CLK3-218ENST00000566926 CHRNA9Q9UGM1 479 aa11.99□□□□□ -0.49
CLK3-218ENST00000566926 NDRG3Q9UGV2 375 aa11.99□□□□□ -0.49
CLK3-218ENST00000566926 MGAT4BQ9UQ53 548 aa11.99□□□□□ -0.49
CLK3-218ENST00000566926 ANKRD17O75179 2603 aaKnown RBP11.98□□□□□ -0.49
CLK3-218ENST00000566926 SH3PXD2BA1X283 911 aa11.98□□□□□ -0.49
CLK3-218ENST00000566926 CHP2O43745 196 aa11.98□□□□□ -0.49
CLK3-218ENST00000566926 TFPIP10646 304 aa11.98□□□□□ -0.49
CLK3-218ENST00000566926 EPXP11678 715 aa11.98□□□□□ -0.49
CLK3-218ENST00000566926 SHC1P29353 583 aa11.98□□□□□ -0.49
CLK3-218ENST00000566926 RBM34P42696 430 aaKnown RBP11.98□□□□□ -0.49
CLK3-218ENST00000566926 SLC1A3P43003 542 aa11.98□□□□□ -0.49
CLK3-218ENST00000566926 POLR2HP52434 150 aaKnown RBP11.98□□□□□ -0.49
CLK3-218ENST00000566926 COX10Q12887 443 aa11.98□□□□□ -0.49
CLK3-218ENST00000566926 GUSBP1Q15486 140 aa11.98□□□□□ -0.49
CLK3-218ENST00000566926 EXOC3L2Q2M3D2 409 aa11.98□□□□□ -0.49
CLK3-218ENST00000566926 SYT14P1Q58G82 188 aa11.98□□□□□ -0.49
CLK3-218ENST00000566926 TMEM201Q5SNT2 666 aa11.98□□□□□ -0.49
CLK3-218ENST00000566926 TTC23Q5W5X9 447 aa11.98□□□□□ -0.49
CLK3-218ENST00000566926 KDM4DQ6B0I6 523 aa11.98□□□□□ -0.49
CLK3-218ENST00000566926 WBP2NLQ6ICG8 309 aa11.98□□□□□ -0.49
CLK3-218ENST00000566926 ULK3Q6PHR2 472 aa11.98□□□□□ -0.49
CLK3-218ENST00000566926 TMPPEQ6ZT21 453 aa11.98□□□□□ -0.49
CLK3-218ENST00000566926 FCRLAQ7L513 359 aa11.98□□□□□ -0.49
CLK3-218ENST00000566926 RRM2BQ7LG56 351 aa11.98□□□□□ -0.49
CLK3-218ENST00000566926 PARP8Q8N3A8 854 aa11.98□□□□□ -0.49
CLK3-218ENST00000566926 OR52J3Q8NH60 311 aa11.98□□□□□ -0.49
CLK3-218ENST00000566926 SLC7A13Q8TCU3 470 aa11.98□□□□□ -0.49
CLK3-218ENST00000566926 RNF128Q8TEB7 428 aa11.98□□□□□ -0.49
CLK3-218ENST00000566926 ACOT11Q8WXI4 607 aaPredicted RBP11.98□□□□□ -0.49
CLK3-218ENST00000566926 SLC41A3Q96GZ6 507 aa11.98□□□□□ -0.49
CLK3-218ENST00000566926 LURAP1Q96LR2 239 aa11.98□□□□□ -0.49
CLK3-218ENST00000566926 FUZQ9BT04 418 aa11.98□□□□□ -0.49
CLK3-218ENST00000566926 CTPS2Q9NRF8 586 aa11.98□□□□□ -0.49
CLK3-218ENST00000566926 PLSCR4Q9NRQ2 329 aa11.98□□□□□ -0.49
CLK3-218ENST00000566926 CRIM1Q9NZV1 1036 aa11.98□□□□□ -0.49
CLK3-218ENST00000566926 KLHL9Q9P2J3 617 aa11.98□□□□□ -0.49
CLK3-218ENST00000566926 RPS6KB2Q9UBS0 482 aa11.98□□□□□ -0.49
CLK3-218ENST00000566926 POFUT2Q9Y2G5 429 aa11.98□□□□□ -0.49
CLK3-218ENST00000566926 HDGFL3Q9Y3E1 203 aa11.98□□□□□ -0.49
CLK3-218ENST00000566926 A0A0B4J2E0 115 aa11.97□□□□□ -0.49
CLK3-218ENST00000566926 A0A1B0GX12 115 aa11.97□□□□□ -0.49
CLK3-218ENST00000566926 CPSF4LA6NMK7 179 aaKnown RBP11.97□□□□□ -0.49
CLK3-218ENST00000566926 SULT2B1O00204 365 aa11.97□□□□□ -0.49
CLK3-218ENST00000566926 FRS3O43559 492 aa11.97□□□□□ -0.49
CLK3-218ENST00000566926 DENRO43583 198 aaKnown RBP11.97□□□□□ -0.49
CLK3-218ENST00000566926 DNPH1O43598 174 aa11.97□□□□□ -0.49
CLK3-218ENST00000566926 OR10H3O60404 316 aa11.97□□□□□ -0.49
CLK3-218ENST00000566926 TPST2O60704 377 aa11.97□□□□□ -0.49
CLK3-218ENST00000566926 BCAS1O75363 584 aaPredicted RBP11.97□□□□□ -0.49
CLK3-218ENST00000566926 CGAP01215 116 aa11.97□□□□□ -0.49
CLK3-218ENST00000566926 PNMTP11086 282 aa11.97□□□□□ -0.49
CLK3-218ENST00000566926 POU2F1P14859 743 aa11.97□□□□□ -0.49
CLK3-218ENST00000566926 GSTM3P21266 225 aa11.97□□□□□ -0.49
CLK3-218ENST00000566926 ENPP1P22413 925 aa11.97□□□□□ -0.49
CLK3-218ENST00000566926 CD79BP40259 229 aa11.97□□□□□ -0.49
CLK3-218ENST00000566926 ACAA2P42765 397 aaKnown RBP11.97□□□□□ -0.49
CLK3-218ENST00000566926 IL18R1Q13478 541 aa11.97□□□□□ -0.49
CLK3-218ENST00000566926 MED21Q13503 144 aa11.97□□□□□ -0.49
CLK3-218ENST00000566926 DAZAP2Q15038 168 aaPredicted RBP11.97□□□□□ -0.49
CLK3-218ENST00000566926 OR1Q1Q15612 314 aa11.97□□□□□ -0.49
CLK3-218ENST00000566926 BEND4Q6ZU67 534 aa11.97□□□□□ -0.49
CLK3-218ENST00000566926 TMEM179BQ7Z7N9 219 aa11.97□□□□□ -0.49
CLK3-218ENST00000566926 TMEM200AQ86VY9 491 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms