RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 OR1K1Q8NGR3 316 aa13□□□□□ -0.33
CLN3-213ENST00000565047 DNAJA4Q8WW22 397 aaPredicted RBP13□□□□□ -0.33
CLN3-213ENST00000565047 BCL2L2Q92843 193 aaPredicted RBP13□□□□□ -0.33
CLN3-213ENST00000565047 SLC25A36Q96CQ1 311 aa13□□□□□ -0.33
CLN3-213ENST00000565047 OXGR1Q96P68 337 aa13□□□□□ -0.33
CLN3-213ENST00000565047 ARHGDIGQ99819 225 aa13□□□□□ -0.33
CLN3-213ENST00000565047 CACYBPQ9HB71 228 aaKnown RBP13□□□□□ -0.33
CLN3-213ENST00000565047 ARGLU1Q9NWB6 273 aaPredicted RBP13□□□□□ -0.33
CLN3-213ENST00000565047 ZNF446Q9NWS9 450 aa13□□□□□ -0.33
CLN3-213ENST00000565047 TESQ9UGI8 421 aaKnown RBP13□□□□□ -0.33
CLN3-213ENST00000565047 B3GALT5Q9Y2C3 310 aa13□□□□□ -0.33
CLN3-213ENST00000565047 AMDHD2Q9Y303 409 aa13□□□□□ -0.33
CLN3-213ENST00000565047 PLCE1Q9P212 2302 aa12.99□□□□□ -0.33
CLN3-213ENST00000565047 TRAV36DV7A0A075B6V5 113 aa12.99□□□□□ -0.33
CLN3-213ENST00000565047 PRORSD1PA6NEY8 169 aa12.99□□□□□ -0.33
CLN3-213ENST00000565047 M0QX08 132 aa12.99□□□□□ -0.33
CLN3-213ENST00000565047 M0R082 166 aa12.99□□□□□ -0.33
CLN3-213ENST00000565047 SMAD7O15105 426 aaKnown RBP12.99□□□□□ -0.33
CLN3-213ENST00000565047 OR2T1O43869 369 aa12.99□□□□□ -0.33
CLN3-213ENST00000565047 BGLAPP02818 100 aa12.99□□□□□ -0.33
CLN3-213ENST00000565047 PTNP21246 168 aa12.99□□□□□ -0.33
CLN3-213ENST00000565047 CDH12P55289 794 aa12.99□□□□□ -0.33
CLN3-213ENST00000565047 ETFDHQ16134 617 aa12.99□□□□□ -0.33
CLN3-213ENST00000565047 NRF1Q16656 503 aa12.99□□□□□ -0.33
CLN3-213ENST00000565047 HIKESHIQ53FT3 197 aa12.99□□□□□ -0.33
CLN3-213ENST00000565047 NIPAL3Q6P499 406 aa12.99□□□□□ -0.33
CLN3-213ENST00000565047 KLHL17Q6TDP4 642 aa12.99□□□□□ -0.33
CLN3-213ENST00000565047 C5orf46Q6UWT4 87 aa12.99□□□□□ -0.33
CLN3-213ENST00000565047 ARMC8Q8IUR7 673 aa12.99□□□□□ -0.33
CLN3-213ENST00000565047 WDFY1Q8IWB7 410 aa12.99□□□□□ -0.33
CLN3-213ENST00000565047 TMEM123Q8N131 208 aa12.99□□□□□ -0.33
CLN3-213ENST00000565047 PIAS4Q8N2W9 510 aaPredicted RBP12.99□□□□□ -0.33
CLN3-213ENST00000565047 SMYD1Q8NB12 490 aa12.99□□□□□ -0.33
CLN3-213ENST00000565047 C11orf65Q8NCR3 313 aa12.99□□□□□ -0.33
CLN3-213ENST00000565047 ADPRHL1Q8NDY3 354 aa12.99□□□□□ -0.33
CLN3-213ENST00000565047 ANKK1Q8NFD2 765 aa12.99□□□□□ -0.33
CLN3-213ENST00000565047 BHLHE22Q8NFJ8 381 aaPredicted RBP12.99□□□□□ -0.33
CLN3-213ENST00000565047 ZNF417Q8TAU3 575 aa12.99□□□□□ -0.33
CLN3-213ENST00000565047 MAGEE2Q8TD90 523 aaPredicted RBP12.99□□□□□ -0.33
CLN3-213ENST00000565047 SLC47A1Q96FL8 570 aa12.99□□□□□ -0.33
CLN3-213ENST00000565047 TRMT61AQ96FX7 289 aaKnown RBP12.99□□□□□ -0.33
CLN3-213ENST00000565047 ZNF607Q96SK3 696 aa12.99□□□□□ -0.33
CLN3-213ENST00000565047 ZNF587Q96SQ5 575 aaPredicted RBP12.99□□□□□ -0.33
CLN3-213ENST00000565047 DHRS9Q9BPW9 319 aa12.99□□□□□ -0.33
CLN3-213ENST00000565047 EVA1AQ9H8M9 152 aa12.99□□□□□ -0.33
CLN3-213ENST00000565047 CRNNQ9UBG3 495 aaPredicted RBP12.99□□□□□ -0.33
CLN3-213ENST00000565047 GDF2Q9UK05 429 aaPredicted RBP12.99□□□□□ -0.33
CLN3-213ENST00000565047 TRIM33Q9UPN9 1127 aa12.99□□□□□ -0.33
CLN3-213ENST00000565047 RCE1Q9Y256 329 aa12.99□□□□□ -0.33
CLN3-213ENST00000565047 CSPG4Q6UVK1 2322 aa12.99□□□□□ -0.33
CLN3-213ENST00000565047 ARPC4-TTLL3A0A0A6YYG9 625 aa12.98□□□□□ -0.33
CLN3-213ENST00000565047 A0A0G2JND7 137 aa12.98□□□□□ -0.33
CLN3-213ENST00000565047 OR6C65A6NJZ3 312 aa12.98□□□□□ -0.33
CLN3-213ENST00000565047 M0R1B8 84 aa12.98□□□□□ -0.33
CLN3-213ENST00000565047 FXYD1O00168 92 aa12.98□□□□□ -0.33
CLN3-213ENST00000565047 TRAF3IP2O43734 574 aaPredicted RBP12.98□□□□□ -0.33
CLN3-213ENST00000565047 FMO6PO60774 539 aa12.98□□□□□ -0.33
CLN3-213ENST00000565047 SERPINB7O75635 380 aa12.98□□□□□ -0.33
CLN3-213ENST00000565047 HPRP00739 348 aa12.98□□□□□ -0.33
CLN3-213ENST00000565047 C8BP07358 591 aa12.98□□□□□ -0.33
CLN3-213ENST00000565047 CD247P20963 164 aa12.98□□□□□ -0.33
CLN3-213ENST00000565047 GRPRP30550 384 aa12.98□□□□□ -0.33
CLN3-213ENST00000565047 ACVR1BP36896 505 aa12.98□□□□□ -0.33
CLN3-213ENST00000565047 RGS8P57771 180 aaPredicted RBP12.98□□□□□ -0.33
CLN3-213ENST00000565047 PRPS1P60891 318 aa12.98□□□□□ -0.33
CLN3-213ENST00000565047 CLEC12BQ2HXU8 276 aa12.98□□□□□ -0.33
CLN3-213ENST00000565047 MST1LQ2TV78 715 aa12.98□□□□□ -0.33
CLN3-213ENST00000565047 SLC22A25Q6T423 547 aa12.98□□□□□ -0.33
CLN3-213ENST00000565047 WDR88Q6ZMY6 472 aa12.98□□□□□ -0.33
CLN3-213ENST00000565047 H1FNTQ75WM6 255 aaPredicted RBP12.98□□□□□ -0.33
CLN3-213ENST00000565047 OR6T1Q8NGN1 323 aa12.98□□□□□ -0.33
CLN3-213ENST00000565047 ZNF837Q96EG3 531 aaPredicted RBP12.98□□□□□ -0.33
CLN3-213ENST00000565047 MOGAT1Q96PD6 335 aa12.98□□□□□ -0.33
CLN3-213ENST00000565047 ALKBH3Q96Q83 286 aaPredicted RBP12.98□□□□□ -0.33
CLN3-213ENST00000565047 OBP2BQ9NPH6 170 aa12.98□□□□□ -0.33
CLN3-213ENST00000565047 RPS6KB2Q9UBS0 482 aa12.98□□□□□ -0.33
CLN3-213ENST00000565047 ANGPT4Q9Y264 503 aa12.98□□□□□ -0.33
CLN3-213ENST00000565047 A0A096LNT2 108 aa12.97□□□□□ -0.33
CLN3-213ENST00000565047 IGHV1-18A0A0C4DH31 117 aa12.97□□□□□ -0.33
CLN3-213ENST00000565047 M0R3H8 397 aa12.97□□□□□ -0.33
CLN3-213ENST00000565047 AIM2O14862 343 aa12.97□□□□□ -0.33
CLN3-213ENST00000565047 ANGPT2O15123 496 aa12.97□□□□□ -0.33
CLN3-213ENST00000565047 IGLV1-44P01699 117 aa12.97□□□□□ -0.33
CLN3-213ENST00000565047 HLA-DOBP13765 273 aa12.97□□□□□ -0.33
CLN3-213ENST00000565047 ZNF43P17038 809 aa12.97□□□□□ -0.33
CLN3-213ENST00000565047 CLDN17P56750 224 aa12.97□□□□□ -0.33
CLN3-213ENST00000565047 TBRG1Q3YBR2 411 aa12.97□□□□□ -0.33
CLN3-213ENST00000565047 PHYHD1Q5SRE7 291 aa12.97□□□□□ -0.33
CLN3-213ENST00000565047 SWT1Q5T5J6 900 aaKnown RBP12.97□□□□□ -0.33
CLN3-213ENST00000565047 AGAP6Q5VW22 663 aa12.97□□□□□ -0.33
CLN3-213ENST00000565047 NANOGP8Q6NSW7 305 aa12.97□□□□□ -0.33
CLN3-213ENST00000565047 ZNF544Q6NX49 715 aa12.97□□□□□ -0.33
CLN3-213ENST00000565047 ZNF613Q6PF04 617 aa12.97□□□□□ -0.33
CLN3-213ENST00000565047 CCDC80Q76M96 950 aa12.97□□□□□ -0.33
CLN3-213ENST00000565047 ABHD12BQ7Z5M8 362 aaPredicted RBP12.97□□□□□ -0.33
CLN3-213ENST00000565047 CALHM3Q86XJ0 350 aa12.97□□□□□ -0.33
CLN3-213ENST00000565047 RBM45Q8IUH3 476 aaKnown RBP12.97□□□□□ -0.33
CLN3-213ENST00000565047 TAMM41Q96BW9 452 aa12.97□□□□□ -0.33
CLN3-213ENST00000565047 ZNF317Q96PQ6 595 aaPredicted RBP12.97□□□□□ -0.33
CLN3-213ENST00000565047 OR2M2Q96R28 347 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms