RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 OR1K1Q8NGR3 316 aa16.56■□□□□ 0.24
VPS35-202ENST00000561713 BBS10Q8TAM1 723 aa16.56■□□□□ 0.24
VPS35-202ENST00000561713 IKZF5Q9H5V7 419 aa16.56■□□□□ 0.24
VPS35-202ENST00000561713 ZNF232Q9UNY5 417 aa16.56■□□□□ 0.24
VPS35-202ENST00000561713 IGHV1-18A0A0C4DH31 117 aa16.55■□□□□ 0.24
VPS35-202ENST00000561713 FTCDNL1E5RQL4 147 aa16.55■□□□□ 0.24
VPS35-202ENST00000561713 H7C417 338 aa16.55■□□□□ 0.24
VPS35-202ENST00000561713 LMX1BO60663 402 aa16.55■□□□□ 0.24
VPS35-202ENST00000561713 USF1P22415 310 aaPredicted RBP16.55■□□□□ 0.24
VPS35-202ENST00000561713 CBLP22681 906 aa16.55■□□□□ 0.24
VPS35-202ENST00000561713 THBS2P35442 1172 aa16.55■□□□□ 0.24
VPS35-202ENST00000561713 IDH3AP50213 366 aa16.55■□□□□ 0.24
VPS35-202ENST00000561713 PRPS1P60891 318 aa16.55■□□□□ 0.24
VPS35-202ENST00000561713 FADDQ13158 208 aa16.55■□□□□ 0.24
VPS35-202ENST00000561713 GLIPR1L2Q4G1C9 344 aa16.55■□□□□ 0.24
VPS35-202ENST00000561713 PAGE3Q5JUK9 113 aa16.55■□□□□ 0.24
VPS35-202ENST00000561713 GCNT6Q5T4J0 391 aa16.55■□□□□ 0.24
VPS35-202ENST00000561713 FBXO17Q96EF6 278 aa16.55■□□□□ 0.24
VPS35-202ENST00000561713 C7orf26Q96N11 449 aa16.55■□□□□ 0.24
VPS35-202ENST00000561713 NELFAQ9H3P2 528 aa16.55■□□□□ 0.24
VPS35-202ENST00000561713 FKRPQ9H9S5 495 aa16.55■□□□□ 0.24
VPS35-202ENST00000561713 CCDC167Q9P0B6 97 aa16.55■□□□□ 0.24
VPS35-202ENST00000561713 IFT52Q9Y366 437 aa16.55■□□□□ 0.24
VPS35-202ENST00000561713 IGKV1D-42A0A075B6H8 117 aa16.54■□□□□ 0.24
VPS35-202ENST00000561713 SEC14L2O76054 403 aa16.54■□□□□ 0.24
VPS35-202ENST00000561713 ARAFP10398 606 aa16.54■□□□□ 0.24
VPS35-202ENST00000561713 BMP2P12643 396 aa16.54■□□□□ 0.24
VPS35-202ENST00000561713 SRD5A1P18405 259 aa16.54■□□□□ 0.24
VPS35-202ENST00000561713 IGFBP5P24593 272 aa16.54■□□□□ 0.24
VPS35-202ENST00000561713 GTF2E2P29084 291 aaKnown RBP16.54■□□□□ 0.24
VPS35-202ENST00000561713 AQP1P29972 269 aa16.54■□□□□ 0.24
VPS35-202ENST00000561713 CLDN17P56750 224 aa16.54■□□□□ 0.24
VPS35-202ENST00000561713 ZNF544Q6NX49 715 aa16.54■□□□□ 0.24
VPS35-202ENST00000561713 MYPOPQ86VE0 399 aaPredicted RBP16.54■□□□□ 0.24
VPS35-202ENST00000561713 STK35Q8TDR2 534 aa16.54■□□□□ 0.24
VPS35-202ENST00000561713 LRRC8CQ8TDW0 803 aa16.54■□□□□ 0.24
VPS35-202ENST00000561713 PROX1Q92786 737 aa16.54■□□□□ 0.24
VPS35-202ENST00000561713 SPDL1Q96EA4 605 aa16.54■□□□□ 0.24
VPS35-202ENST00000561713 RAD21L1Q9H4I0 556 aa16.54■□□□□ 0.24
VPS35-202ENST00000561713 BCL2L10Q9HD36 194 aa16.54■□□□□ 0.24
VPS35-202ENST00000561713 THUMPD1Q9NXG2 353 aaKnown RBP16.54■□□□□ 0.24
VPS35-202ENST00000561713 VAPAQ9P0L0 249 aa16.54■□□□□ 0.24
VPS35-202ENST00000561713 B3GAT1Q9P2W7 334 aa16.54■□□□□ 0.24
VPS35-202ENST00000561713 A0A1B0GWA3 101 aa16.53■□□□□ 0.24
VPS35-202ENST00000561713 SLC35F4A4IF30 521 aa16.53■□□□□ 0.24
VPS35-202ENST00000561713 M0R082 166 aa16.53■□□□□ 0.24
VPS35-202ENST00000561713 TPST1O60507 370 aa16.53■□□□□ 0.24
VPS35-202ENST00000561713 WNT11O96014 354 aa16.53■□□□□ 0.24
VPS35-202ENST00000561713 CELA3BP08861 270 aa16.53■□□□□ 0.24
VPS35-202ENST00000561713 EFNA4P52798 201 aa16.53■□□□□ 0.24
VPS35-202ENST00000561713 LSM11P83369 360 aaKnown RBP eCLIP16.53■□□□□ 0.24
VPS35-202ENST00000561713 IL1RL1Q01638 556 aa16.53■□□□□ 0.24
VPS35-202ENST00000561713 ROR2Q01974 943 aaKnown RBP16.53■□□□□ 0.24
VPS35-202ENST00000561713 TTMPQ5BVD1 217 aa16.53■□□□□ 0.24
VPS35-202ENST00000561713 LRIF1Q5T3J3 769 aa16.53■□□□□ 0.24
VPS35-202ENST00000561713 AGBL2Q5U5Z8 902 aa16.53■□□□□ 0.24
VPS35-202ENST00000561713 ZNF417Q8TAU3 575 aa16.53■□□□□ 0.24
VPS35-202ENST00000561713 SLC38A2Q96QD8 506 aa16.53■□□□□ 0.24
VPS35-202ENST00000561713 ZNF587Q96SQ5 575 aaPredicted RBP16.53■□□□□ 0.24
VPS35-202ENST00000561713 ARMC7Q9H6L4 198 aa16.53■□□□□ 0.24
VPS35-202ENST00000561713 CHODLQ9H9P2 273 aa16.53■□□□□ 0.24
VPS35-202ENST00000561713 RPS6KB2Q9UBS0 482 aa16.53■□□□□ 0.24
VPS35-202ENST00000561713 RASD1Q9Y272 281 aa16.53■□□□□ 0.24
VPS35-202ENST00000561713 AQP5P55064 265 aa16.52■□□□□ 0.24
VPS35-202ENST00000561713 UBE2NP61088 152 aaKnown RBP16.52■□□□□ 0.24
VPS35-202ENST00000561713 ZSWIM7Q19AV6 140 aa16.52■□□□□ 0.24
VPS35-202ENST00000561713 FAM120AOSQ5T036 256 aa16.52■□□□□ 0.24
VPS35-202ENST00000561713 BLOC1S3Q6QNY0 202 aa16.52■□□□□ 0.24
VPS35-202ENST00000561713 VHLLQ6RSH7 139 aa16.52■□□□□ 0.24
VPS35-202ENST00000561713 ABHD12BQ7Z5M8 362 aaPredicted RBP16.52■□□□□ 0.24
VPS35-202ENST00000561713 MFSD8Q8NHS3 518 aa16.52■□□□□ 0.24
VPS35-202ENST00000561713 RNF217Q8TC41 542 aa16.52■□□□□ 0.24
VPS35-202ENST00000561713 TAAR8Q969N4 342 aa16.52■□□□□ 0.24
VPS35-202ENST00000561713 THOC1Q96FV9 657 aaKnown RBP16.52■□□□□ 0.24
VPS35-202ENST00000561713 SORCS2Q96PQ0 1159 aa16.52■□□□□ 0.24
VPS35-202ENST00000561713 WFDC6Q9BQY6 131 aa16.52■□□□□ 0.24
VPS35-202ENST00000561713 TMEM45AQ9NWC5 275 aa16.52■□□□□ 0.24
VPS35-202ENST00000561713 NIPSNAP3AQ9UFN0 247 aaPredicted RBP16.52■□□□□ 0.24
VPS35-202ENST00000561713 TRBV5-3A0A0A0MS03 114 aa16.51■□□□□ 0.23
VPS35-202ENST00000561713 ZNF503-AS2A6NEH8 195 aa16.51■□□□□ 0.23
VPS35-202ENST00000561713 VAMP5O95183 116 aa16.51■□□□□ 0.23
VPS35-202ENST00000561713 CECR9P0C854 216 aa16.51■□□□□ 0.23
VPS35-202ENST00000561713 GRPRP30550 384 aa16.51■□□□□ 0.23
VPS35-202ENST00000561713 CALCRP30988 508 aa16.51■□□□□ 0.23
VPS35-202ENST00000561713 PRKAR1BP31321 381 aa16.51■□□□□ 0.23
VPS35-202ENST00000561713 MRPL19P49406 292 aaKnown RBP16.51■□□□□ 0.23
VPS35-202ENST00000561713 CDK6Q00534 326 aa16.51■□□□□ 0.23
VPS35-202ENST00000561713 AGKQ53H12 422 aa16.51■□□□□ 0.23
VPS35-202ENST00000561713 FAM166AQ6J272 317 aa16.51■□□□□ 0.23
VPS35-202ENST00000561713 C6orf89Q6UWU4 347 aa16.51■□□□□ 0.23
VPS35-202ENST00000561713 ANKS4BQ8N8V4 417 aa16.51■□□□□ 0.23
VPS35-202ENST00000561713 BCL2L2Q92843 193 aaPredicted RBP16.51■□□□□ 0.23
VPS35-202ENST00000561713 ZNF837Q96EG3 531 aaPredicted RBP16.51■□□□□ 0.23
VPS35-202ENST00000561713 SLC52A3Q9NQ40 469 aa16.51■□□□□ 0.23
VPS35-202ENST00000561713 KCNS2Q9ULS6 477 aa16.51■□□□□ 0.23
VPS35-202ENST00000561713 LOC100289279A0A1B0GTE1 492 aa16.5■□□□□ 0.23
VPS35-202ENST00000561713 HPRP00739 348 aa16.5■□□□□ 0.23
VPS35-202ENST00000561713 CSF3P09919 207 aa16.5■□□□□ 0.23
VPS35-202ENST00000561713 ETS2P15036 469 aa16.5■□□□□ 0.23
VPS35-202ENST00000561713 ZNF43P17038 809 aa16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms