RNA–Protein interactions for RNA: ENST00000560445.1

TPM1-223, Transcript of tropomyosin 1, human

TSL 3 BASIC

Gene TPM1, Length 485 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM1-223	ENST00000560445	REG4	Q9BYZ8	158 aa		12.35	□□□□□ -0.43
TPM1-223	ENST00000560445	B3GAT2	Q9NPZ5	323 aa		12.35	□□□□□ -0.43
TPM1-223	ENST00000560445	NDUFAF1	Q9Y375	327 aa		12.35	□□□□□ -0.43
TPM1-223	ENST00000560445	FKBP7	Q9Y680	259 aa		12.35	□□□□□ -0.43
TPM1-223	ENST00000560445	CSPG4	Q6UVK1	2322 aa		12.34	□□□□□ -0.43
TPM1-223	ENST00000560445	LOC102725191	A0A1B0GVB3	256 aa		12.34	□□□□□ -0.43
TPM1-223	ENST00000560445		H7C417	338 aa		12.34	□□□□□ -0.43
TPM1-223	ENST00000560445	TLX2	O43763	284 aa	Predicted RBP	12.34	□□□□□ -0.43
TPM1-223	ENST00000560445	FMO6P	O60774	539 aa		12.34	□□□□□ -0.43
TPM1-223	ENST00000560445	C8B	P07358	591 aa		12.34	□□□□□ -0.43
TPM1-223	ENST00000560445	NQO1	P15559	274 aa	Known RBP	12.34	□□□□□ -0.43
TPM1-223	ENST00000560445	HOXB9	P17482	250 aa	Predicted RBP	12.34	□□□□□ -0.43
TPM1-223	ENST00000560445	APOBEC3A	P31941	199 aa	Predicted RBP	12.34	□□□□□ -0.43
TPM1-223	ENST00000560445	RPS5	P46782	204 aa	Known RBP	12.34	□□□□□ -0.43
TPM1-223	ENST00000560445	SNRPD2	P62316	118 aa	Known RBP	12.34	□□□□□ -0.43
TPM1-223	ENST00000560445	IL1RL1	Q01638	556 aa		12.34	□□□□□ -0.43
TPM1-223	ENST00000560445	BNIP2	Q12982	314 aa		12.34	□□□□□ -0.43
TPM1-223	ENST00000560445	CYP51A1	Q16850	503 aa		12.34	□□□□□ -0.43
TPM1-223	ENST00000560445	INTS11	Q5TA45	600 aa	Known RBP	12.34	□□□□□ -0.43
TPM1-223	ENST00000560445	C9orf135	Q5VTT2	229 aa		12.34	□□□□□ -0.43
TPM1-223	ENST00000560445	METTL21C	Q5VZV1	264 aa		12.34	□□□□□ -0.43
TPM1-223	ENST00000560445	NIPAL3	Q6P499	406 aa		12.34	□□□□□ -0.43
TPM1-223	ENST00000560445	H1FNT	Q75WM6	255 aa	Predicted RBP	12.34	□□□□□ -0.43
TPM1-223	ENST00000560445	FUNDC1	Q8IVP5	155 aa		12.34	□□□□□ -0.43
TPM1-223	ENST00000560445	GPR137C	Q8N3F9	429 aa		12.34	□□□□□ -0.43
TPM1-223	ENST00000560445	FAM169B	Q8N8A8	192 aa		12.34	□□□□□ -0.43
TPM1-223	ENST00000560445	ZIC4	Q8N9L1	334 aa		12.34	□□□□□ -0.43
TPM1-223	ENST00000560445	SCAI	Q8N9R8	606 aa		12.34	□□□□□ -0.43
TPM1-223	ENST00000560445	CKAP2	Q8WWK9	683 aa		12.34	□□□□□ -0.43
TPM1-223	ENST00000560445	RASSF5	Q8WWW0	418 aa		12.34	□□□□□ -0.43
TPM1-223	ENST00000560445	ZNF385A	Q96PM9	386 aa	Known RBP	12.34	□□□□□ -0.43
TPM1-223	ENST00000560445	SH3GL1	Q99961	368 aa		12.34	□□□□□ -0.43
TPM1-223	ENST00000560445	CACNG6	Q9BXT2	260 aa		12.34	□□□□□ -0.43
TPM1-223	ENST00000560445	SLC25A37	Q9NYZ2	338 aa		12.34	□□□□□ -0.43
TPM1-223	ENST00000560445	HEATR1	Q9H583	2144 aa	Known RBP	12.34	□□□□□ -0.43
TPM1-223	ENST00000560445	ARPC4-TTLL3	A0A0A6YYG9	625 aa		12.33	□□□□□ -0.44
TPM1-223	ENST00000560445		A0A1B0GWA3	101 aa		12.33	□□□□□ -0.44
TPM1-223	ENST00000560445	FTCDNL1	E5RQL4	147 aa		12.33	□□□□□ -0.44
TPM1-223	ENST00000560445		E7EQL1	145 aa		12.33	□□□□□ -0.44
TPM1-223	ENST00000560445	RNF223	E7ERA6	249 aa		12.33	□□□□□ -0.44
TPM1-223	ENST00000560445	FZD7	O75084	574 aa		12.33	□□□□□ -0.44
TPM1-223	ENST00000560445	PDE5A	O76074	875 aa		12.33	□□□□□ -0.44
TPM1-223	ENST00000560445	IGHV4-39	P01824	125 aa		12.33	□□□□□ -0.44
TPM1-223	ENST00000560445	ERCC1	P07992	297 aa	Predicted RBP	12.33	□□□□□ -0.44
TPM1-223	ENST00000560445	NUDT7	P0C024	238 aa		12.33	□□□□□ -0.44
TPM1-223	ENST00000560445	H2AFX	P16104	143 aa	Predicted RBP	12.33	□□□□□ -0.44
TPM1-223	ENST00000560445	SLC25A16	P16260	332 aa		12.33	□□□□□ -0.44
TPM1-223	ENST00000560445	CDH2	P19022	906 aa	Predicted RBP	12.33	□□□□□ -0.44
TPM1-223	ENST00000560445	PCSK6	P29122	969 aa		12.33	□□□□□ -0.44
TPM1-223	ENST00000560445	ACVR1B	P36896	505 aa		12.33	□□□□□ -0.44
TPM1-223	ENST00000560445	TBRG1	Q3YBR2	411 aa		12.33	□□□□□ -0.44
TPM1-223	ENST00000560445	DHDDS	Q86SQ9	333 aa		12.33	□□□□□ -0.44
TPM1-223	ENST00000560445	PATL1	Q86TB9	770 aa	Known RBP	12.33	□□□□□ -0.44
TPM1-223	ENST00000560445	WDR31	Q8NA23	367 aa		12.33	□□□□□ -0.44
TPM1-223	ENST00000560445	IL17RD	Q8NFM7	739 aa		12.33	□□□□□ -0.44
TPM1-223	ENST00000560445	OR1K1	Q8NGR3	316 aa		12.33	□□□□□ -0.44
TPM1-223	ENST00000560445	RNF217	Q8TC41	542 aa		12.33	□□□□□ -0.44
TPM1-223	ENST00000560445	ALKBH3	Q96Q83	286 aa	Predicted RBP	12.33	□□□□□ -0.44
TPM1-223	ENST00000560445	SLC38A2	Q96QD8	506 aa		12.33	□□□□□ -0.44
TPM1-223	ENST00000560445	MYOZ1	Q9NP98	299 aa	Predicted RBP	12.33	□□□□□ -0.44
TPM1-223	ENST00000560445	VAPA	Q9P0L0	249 aa		12.33	□□□□□ -0.44
TPM1-223	ENST00000560445	TRBV5-3	A0A0A0MS03	114 aa		12.32	□□□□□ -0.44
TPM1-223	ENST00000560445		A0A1W2PR80	420 aa		12.32	□□□□□ -0.44
TPM1-223	ENST00000560445	RPL36A-HNRNPH2	H7BZ11	118 aa		12.32	□□□□□ -0.44
TPM1-223	ENST00000560445	SSX4	O60224	188 aa		12.32	□□□□□ -0.44
TPM1-223	ENST00000560445	MT-ATP6	P00846	226 aa		12.32	□□□□□ -0.44
TPM1-223	ENST00000560445	CD8A	P01732	235 aa		12.32	□□□□□ -0.44
TPM1-223	ENST00000560445	NTF4	P34130	210 aa		12.32	□□□□□ -0.44
TPM1-223	ENST00000560445	SELENOP	P49908	381 aa		12.32	□□□□□ -0.44
TPM1-223	ENST00000560445	P2RY4	P51582	365 aa		12.32	□□□□□ -0.44
TPM1-223	ENST00000560445	CLDN17	P56750	224 aa		12.32	□□□□□ -0.44
TPM1-223	ENST00000560445	ROR2	Q01974	943 aa	Known RBP	12.32	□□□□□ -0.44
TPM1-223	ENST00000560445	ZNF613	Q6PF04	617 aa		12.32	□□□□□ -0.44
TPM1-223	ENST00000560445	EPHX4	Q8IUS5	362 aa		12.32	□□□□□ -0.44
TPM1-223	ENST00000560445	UEVLD	Q8IX04	471 aa		12.32	□□□□□ -0.44
TPM1-223	ENST00000560445	DPP10	Q8N608	796 aa		12.32	□□□□□ -0.44
TPM1-223	ENST00000560445	OR4F15	Q8NGB8	312 aa		12.32	□□□□□ -0.44
TPM1-223	ENST00000560445	NANOS1	Q8WY41	292 aa	Known RBP	12.32	□□□□□ -0.44
TPM1-223	ENST00000560445	KTI12	Q96EK9	354 aa	Predicted RBP	12.32	□□□□□ -0.44
TPM1-223	ENST00000560445	TMEM43	Q9BTV4	400 aa		12.32	□□□□□ -0.44
TPM1-223	ENST00000560445	PTDSS2	Q9BVG9	487 aa		12.32	□□□□□ -0.44
TPM1-223	ENST00000560445	FBXL3	Q9UKT7	428 aa		12.32	□□□□□ -0.44
TPM1-223	ENST00000560445	CHST2	Q9Y4C5	530 aa		12.32	□□□□□ -0.44
TPM1-223	ENST00000560445	NOX1	Q9Y5S8	564 aa		12.32	□□□□□ -0.44
TPM1-223	ENST00000560445	VPS13C	Q709C8	3753 aa		12.32	□□□□□ -0.44
TPM1-223	ENST00000560445	JMJD1C	Q15652	2540 aa		12.32	□□□□□ -0.44
TPM1-223	ENST00000560445		A0A087WUJ7	227 aa		12.31	□□□□□ -0.44
TPM1-223	ENST00000560445		M0R082	166 aa		12.31	□□□□□ -0.44
TPM1-223	ENST00000560445	OR6A2	O95222	327 aa		12.31	□□□□□ -0.44
TPM1-223	ENST00000560445	LGI1	O95970	557 aa		12.31	□□□□□ -0.44
TPM1-223	ENST00000560445	TROVE2	P10155	538 aa	Known RBP eCLIP	12.31	□□□□□ -0.44
TPM1-223	ENST00000560445	ARR3	P36575	388 aa		12.31	□□□□□ -0.44
TPM1-223	ENST00000560445	EFNA4	P52798	201 aa		12.31	□□□□□ -0.44
TPM1-223	ENST00000560445	NFYC	Q13952	458 aa		12.31	□□□□□ -0.44
TPM1-223	ENST00000560445	MAPRE2	Q15555	327 aa		12.31	□□□□□ -0.44
TPM1-223	ENST00000560445	HIKESHI	Q53FT3	197 aa		12.31	□□□□□ -0.44
TPM1-223	ENST00000560445	PAGE3	Q5JUK9	113 aa		12.31	□□□□□ -0.44
TPM1-223	ENST00000560445	C11orf71	Q6IPW1	123 aa		12.31	□□□□□ -0.44
TPM1-223	ENST00000560445	MSRB3	Q8IXL7	192 aa		12.31	□□□□□ -0.44
TPM1-223	ENST00000560445	C10orf53	Q8N6V4	93 aa		12.31	□□□□□ -0.44

Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms