RNA–Protein interactions for RNA: ENST00000550592.1

LIMA1-205, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 567 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-205ENST00000550592 CTNNBL1Q8WYA6 563 aaPredicted RBP3.6□□□□□ -1.83
LIMA1-205ENST00000550592 FAF2Q96CS3 445 aa3.6□□□□□ -1.83
LIMA1-205ENST00000550592 AMDHD1Q96NU7 426 aa3.6□□□□□ -1.83
LIMA1-205ENST00000550592 KIR2DL4Q99706 377 aa3.6□□□□□ -1.83
LIMA1-205ENST00000550592 TEX13BQ9BXU2 312 aa3.6□□□□□ -1.83
LIMA1-205ENST00000550592 GLIPR2Q9H4G4 154 aa3.6□□□□□ -1.83
LIMA1-205ENST00000550592 PAK1IP1Q9NWT1 392 aaPredicted RBP3.6□□□□□ -1.83
LIMA1-205ENST00000550592 XPO7Q9UIA9 1087 aaKnown RBP3.6□□□□□ -1.83
LIMA1-205ENST00000550592 PPIAL4AQ9Y536 164 aa3.6□□□□□ -1.83
LIMA1-205ENST00000550592 FLVCR1Q9Y5Y0 555 aa3.6□□□□□ -1.83
LIMA1-205ENST00000550592 SMAD5-AS1Q9Y6J3 95 aa3.6□□□□□ -1.83
LIMA1-205ENST00000550592 ADGRA3Q8IWK6 1321 aa3.6□□□□□ -1.83
LIMA1-205ENST00000550592 RAD50Q92878 1312 aa3.6□□□□□ -1.83
LIMA1-205ENST00000550592 DOCK8Q8NF50 2099 aa3.59□□□□□ -1.83
LIMA1-205ENST00000550592 TENM4Q6N022 2769 aa3.59□□□□□ -1.83
LIMA1-205ENST00000550592 IGHV2-70DA0A0C4DH43 119 aa3.59□□□□□ -1.83
LIMA1-205ENST00000550592 LOC100131303A0A0U1RQF7 123 aa3.59□□□□□ -1.83
LIMA1-205ENST00000550592 ERI2A8K979 691 aaKnown RBP3.59□□□□□ -1.83
LIMA1-205ENST00000550592 RSPH10B2B2RC85 870 aa3.59□□□□□ -1.83
LIMA1-205ENST00000550592 F5H6K3 240 aa3.59□□□□□ -1.83
LIMA1-205ENST00000550592 FCN1O00602 326 aa3.59□□□□□ -1.83
LIMA1-205ENST00000550592 TPST2O60704 377 aa3.59□□□□□ -1.83
LIMA1-205ENST00000550592 CA1P00915 261 aaPredicted RBP3.59□□□□□ -1.83
LIMA1-205ENST00000550592 STSP08842 583 aa3.59□□□□□ -1.83
LIMA1-205ENST00000550592 P0C879 139 aa3.59□□□□□ -1.83
LIMA1-205ENST00000550592 RSPH10BP0C881 870 aa3.59□□□□□ -1.83
LIMA1-205ENST00000550592 HNF1AP20823 631 aa3.59□□□□□ -1.83
LIMA1-205ENST00000550592 CSRP1P21291 193 aaKnown RBP3.59□□□□□ -1.83
LIMA1-205ENST00000550592 NMT1P30419 496 aaKnown RBP3.59□□□□□ -1.83
LIMA1-205ENST00000550592 CD80P33681 288 aa3.59□□□□□ -1.83
LIMA1-205ENST00000550592 HPCAL1P37235 193 aa3.59□□□□□ -1.83
LIMA1-205ENST00000550592 HNMTP50135 292 aa3.59□□□□□ -1.83
LIMA1-205ENST00000550592 MESDQ14696 234 aa3.59□□□□□ -1.83
LIMA1-205ENST00000550592 KIAA0040Q15053 153 aa3.59□□□□□ -1.83
LIMA1-205ENST00000550592 PAGE2BQ5JRK9 111 aa3.59□□□□□ -1.83
LIMA1-205ENST00000550592 ZNF658Q5TYW1 1059 aaPredicted RBP3.59□□□□□ -1.83
LIMA1-205ENST00000550592 WSCD1Q658N2 575 aa3.59□□□□□ -1.83
LIMA1-205ENST00000550592 FAM43BQ6ZT52 329 aaPredicted RBP3.59□□□□□ -1.83
LIMA1-205ENST00000550592 C16orf62Q7Z3J2 963 aa3.59□□□□□ -1.83
LIMA1-205ENST00000550592 TBC1D21Q8IYX1 336 aa3.59□□□□□ -1.83
LIMA1-205ENST00000550592 SLC38A6Q8IZM9 456 aa3.59□□□□□ -1.83
LIMA1-205ENST00000550592 OR2A12Q8NGT7 310 aa3.59□□□□□ -1.83
LIMA1-205ENST00000550592 TRMT10AQ8TBZ6 339 aaKnown RBP3.59□□□□□ -1.83
LIMA1-205ENST00000550592 ZPLD1Q8TCW7 415 aa3.59□□□□□ -1.83
LIMA1-205ENST00000550592 EMG1Q92979 244 aaKnown RBP3.59□□□□□ -1.83
LIMA1-205ENST00000550592 SH3YL1Q96HL8 342 aaPredicted RBP3.59□□□□□ -1.83
LIMA1-205ENST00000550592 CELF6Q96J87 481 aaKnown RBP3.59□□□□□ -1.83
LIMA1-205ENST00000550592 PLEKHF1Q96S99 279 aa3.59□□□□□ -1.83
LIMA1-205ENST00000550592 CRNKL1Q9BZJ0 848 aaKnown RBP3.59□□□□□ -1.83
LIMA1-205ENST00000550592 NT5C3AQ9H0P0 336 aa3.59□□□□□ -1.83
LIMA1-205ENST00000550592 ZNF702PQ9H963 129 aa3.59□□□□□ -1.83
LIMA1-205ENST00000550592 ZNF275Q9NSD4 429 aaPredicted RBP3.59□□□□□ -1.83
LIMA1-205ENST00000550592 VNN3Q9NY84 501 aa3.59□□□□□ -1.83
LIMA1-205ENST00000550592 CA5BQ9Y2D0 317 aa3.59□□□□□ -1.83
LIMA1-205ENST00000550592 ALG6Q9Y672 507 aa3.59□□□□□ -1.83
LIMA1-205ENST00000550592 MAD1L1Q9Y6D9 718 aa3.59□□□□□ -1.83
LIMA1-205ENST00000550592 LOC400499M0QZD8 3231 aa3.59□□□□□ -1.83
LIMA1-205ENST00000550592 SCN10AQ9Y5Y9 1956 aa3.59□□□□□ -1.83
LIMA1-205ENST00000550592 CFAP46Q8IYW2 2715 aa3.59□□□□□ -1.83
LIMA1-205ENST00000550592 PCNX1Q96RV3 2341 aa3.59□□□□□ -1.84
LIMA1-205ENST00000550592 DHRS7CA6NNS2 312 aa3.58□□□□□ -1.84
LIMA1-205ENST00000550592 GPR89AB7ZAQ6 455 aa3.58□□□□□ -1.84
LIMA1-205ENST00000550592 ZNF254O75437 659 aa3.58□□□□□ -1.84
LIMA1-205ENST00000550592 UGT2B17O75795 530 aa3.58□□□□□ -1.84
LIMA1-205ENST00000550592 GPR89BP0CG08 455 aa3.58□□□□□ -1.84
LIMA1-205ENST00000550592 KIR2DS2P43631 304 aa3.58□□□□□ -1.84
LIMA1-205ENST00000550592 OC90Q02509 493 aaPredicted RBP3.58□□□□□ -1.84
LIMA1-205ENST00000550592 SF3A2Q15428 464 aaKnown RBP3.58□□□□□ -1.84
LIMA1-205ENST00000550592 OR2B11Q5JQS5 317 aa3.58□□□□□ -1.84
LIMA1-205ENST00000550592 FAM199XQ6PEV8 388 aaPredicted RBP3.58□□□□□ -1.84
LIMA1-205ENST00000550592 C17orf82Q86X59 251 aaPredicted RBP3.58□□□□□ -1.84
LIMA1-205ENST00000550592 STXBP6Q8NFX7 210 aa3.58□□□□□ -1.84
LIMA1-205ENST00000550592 FBXO30Q8TB52 745 aa3.58□□□□□ -1.84
LIMA1-205ENST00000550592 SLC5A11Q8WWX8 675 aa3.58□□□□□ -1.84
LIMA1-205ENST00000550592 HAVCR1Q96D42 359 aa3.58□□□□□ -1.84
LIMA1-205ENST00000550592 NAP1L5Q96NT1 182 aaPredicted RBP3.58□□□□□ -1.84
LIMA1-205ENST00000550592 CYP2S1Q96SQ9 504 aa3.58□□□□□ -1.84
LIMA1-205ENST00000550592 MCHR1Q99705 422 aa3.58□□□□□ -1.84
LIMA1-205ENST00000550592 GORASP2Q9H8Y8 452 aa3.58□□□□□ -1.84
LIMA1-205ENST00000550592 TNFRSF19Q9NS68 423 aa3.58□□□□□ -1.84
LIMA1-205ENST00000550592 B3GNT2Q9NY97 397 aa3.58□□□□□ -1.84
LIMA1-205ENST00000550592 SIGLEC8Q9NYZ4 499 aa3.58□□□□□ -1.84
LIMA1-205ENST00000550592 OR1A1Q9P1Q5 309 aa3.58□□□□□ -1.84
LIMA1-205ENST00000550592 EXTL2Q9UBQ6 330 aa3.58□□□□□ -1.84
LIMA1-205ENST00000550592 KLHL21Q9UJP4 597 aa3.58□□□□□ -1.84
LIMA1-205ENST00000550592 RPH3ALQ9UNE2 315 aa3.58□□□□□ -1.84
LIMA1-205ENST00000550592 MOKQ9UQ07 419 aa3.58□□□□□ -1.84
LIMA1-205ENST00000550592 SCML2Q9UQR0 700 aa3.58□□□□□ -1.84
LIMA1-205ENST00000550592 PDE10AQ9Y233 779 aa3.58□□□□□ -1.84
LIMA1-205ENST00000550592 RASD1Q9Y272 281 aa3.58□□□□□ -1.84
LIMA1-205ENST00000550592 VSIG4Q9Y279 399 aa3.58□□□□□ -1.84
LIMA1-205ENST00000550592 POLQO75417 2590 aa3.58□□□□□ -1.84
LIMA1-205ENST00000550592 GREB1Q4ZG55 1949 aa3.58□□□□□ -1.84
LIMA1-205ENST00000550592 MIA3Q5JRA6 1907 aa3.58□□□□□ -1.84
LIMA1-205ENST00000550592 CACNA1DQ01668 2161 aa3.58□□□□□ -1.84
LIMA1-205ENST00000550592 NAV3Q8IVL0 2385 aa3.58□□□□□ -1.84
LIMA1-205ENST00000550592 ITPR1Q14643 2758 aa3.57□□□□□ -1.84
LIMA1-205ENST00000550592 ZNF705EA8MWA4 302 aaPredicted RBP3.57□□□□□ -1.84
LIMA1-205ENST00000550592 WWP2O00308 870 aa3.57□□□□□ -1.84
LIMA1-205ENST00000550592 RS1O15537 224 aa3.57□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms