RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 KRT8P05787 483 aa8.99□□□□□ -0.97
SS18-205ENST00000542420 MAPK3P27361 379 aaPredicted RBP8.99□□□□□ -0.97
SS18-205ENST00000542420 IL12BP29460 328 aa8.99□□□□□ -0.97
SS18-205ENST00000542420 MAP2K6P52564 334 aa8.99□□□□□ -0.97
SS18-205ENST00000542420 ACY1Q03154 408 aa8.99□□□□□ -0.97
SS18-205ENST00000542420 EGR3Q06889 387 aa8.99□□□□□ -0.97
SS18-205ENST00000542420 IL18Q14116 193 aa8.99□□□□□ -0.97
SS18-205ENST00000542420 CD226Q15762 336 aa8.99□□□□□ -0.97
SS18-205ENST00000542420 ALG10Q5BKT4 473 aa8.99□□□□□ -0.97
SS18-205ENST00000542420 UTS2BQ765I0 119 aa8.99□□□□□ -0.97
SS18-205ENST00000542420 OR2T4Q8NH00 348 aa8.99□□□□□ -0.97
SS18-205ENST00000542420 SNX33Q8WV41 574 aa8.99□□□□□ -0.97
SS18-205ENST00000542420 THAP4Q8WY91 577 aa8.99□□□□□ -0.97
SS18-205ENST00000542420 ZNF501Q96CX3 271 aaPredicted RBP8.99□□□□□ -0.97
SS18-205ENST00000542420 AIFM2Q9BRQ8 373 aa8.99□□□□□ -0.97
SS18-205ENST00000542420 TMEM246Q9BRR3 403 aa8.99□□□□□ -0.97
SS18-205ENST00000542420 SEMA4CQ9C0C4 833 aa8.99□□□□□ -0.97
SS18-205ENST00000542420 WWTR1Q9GZV5 400 aa8.99□□□□□ -0.97
SS18-205ENST00000542420 C12orf4Q9NQ89 552 aa8.99□□□□□ -0.97
SS18-205ENST00000542420 CEP290O15078 2479 aa8.99□□□□□ -0.97
SS18-205ENST00000542420 ZC3H12DA2A288 527 aaKnown RBP8.98□□□□□ -0.97
SS18-205ENST00000542420 OR6C70A6NIJ9 312 aa8.98□□□□□ -0.97
SS18-205ENST00000542420 NPIPB13A6NJU9 1138 aa8.98□□□□□ -0.97
SS18-205ENST00000542420 B4DXG7 233 aa8.98□□□□□ -0.97
SS18-205ENST00000542420 NPIPB4C9JG80 1138 aa8.98□□□□□ -0.97
SS18-205ENST00000542420 FLRT2O43155 660 aa8.98□□□□□ -0.97
SS18-205ENST00000542420 FZD7O75084 574 aa8.98□□□□□ -0.97
SS18-205ENST00000542420 RENP00797 406 aa8.98□□□□□ -0.97
SS18-205ENST00000542420 HIST1H2ABP04908 130 aa8.98□□□□□ -0.97
SS18-205ENST00000542420 FAM157BP0CG42 384 aa8.98□□□□□ -0.97
SS18-205ENST00000542420 PYCR1P32322 319 aa8.98□□□□□ -0.97
SS18-205ENST00000542420 CLDN20P56880 219 aa8.98□□□□□ -0.97
SS18-205ENST00000542420 RAB25P57735 213 aa8.98□□□□□ -0.97
SS18-205ENST00000542420 E2F1Q01094 437 aa8.98□□□□□ -0.97
SS18-205ENST00000542420 CBFBQ13951 182 aa8.98□□□□□ -0.97
SS18-205ENST00000542420 RHBDD2Q6NTF9 364 aa8.98□□□□□ -0.97
SS18-205ENST00000542420 HIST3H2AQ7L7L0 130 aa8.98□□□□□ -0.97
SS18-205ENST00000542420 FAM109AQ8N4B1 249 aa8.98□□□□□ -0.97
SS18-205ENST00000542420 EID2Q8N6I1 236 aa8.98□□□□□ -0.97
SS18-205ENST00000542420 CYB561A3Q8NBI2 242 aa8.98□□□□□ -0.97
SS18-205ENST00000542420 C15orf40Q8WUR7 153 aa8.98□□□□□ -0.97
SS18-205ENST00000542420 ADAMTS14Q8WXS8 1223 aa8.98□□□□□ -0.97
SS18-205ENST00000542420 GHSRQ92847 366 aa8.98□□□□□ -0.97
SS18-205ENST00000542420 HIST1H2ACQ93077 130 aa8.98□□□□□ -0.97
SS18-205ENST00000542420 HLA-CQ95604 372 aa8.98□□□□□ -0.97
SS18-205ENST00000542420 ST6GAL2Q96JF0 529 aa8.98□□□□□ -0.97
SS18-205ENST00000542420 PHOX2BQ99453 314 aa8.98□□□□□ -0.97
SS18-205ENST00000542420 TBX5Q99593 518 aa8.98□□□□□ -0.97
SS18-205ENST00000542420 NUDT9Q9BW91 350 aa8.98□□□□□ -0.97
SS18-205ENST00000542420 MIR1-1HGQ9H1L0 117 aa8.98□□□□□ -0.97
SS18-205ENST00000542420 NARFLQ9H6Q4 476 aa8.98□□□□□ -0.97
SS18-205ENST00000542420 RPRD1BQ9NQG5 326 aaKnown RBP8.98□□□□□ -0.97
SS18-205ENST00000542420 RXFP3Q9NSD7 469 aa8.98□□□□□ -0.97
SS18-205ENST00000542420 STMN3Q9NZ72 180 aa8.98□□□□□ -0.97
SS18-205ENST00000542420 EXTL2Q9UBQ6 330 aa8.98□□□□□ -0.97
SS18-205ENST00000542420 SPAG17Q6Q759 2223 aa8.98□□□□□ -0.97
SS18-205ENST00000542420 FER1L5A0AVI2 2057 aa8.98□□□□□ -0.97
SS18-205ENST00000542420 OR6C68A6NDL8 312 aa8.98□□□□□ -0.97
SS18-205ENST00000542420 FAM25AB3EWG3 89 aa8.98□□□□□ -0.97
SS18-205ENST00000542420 FAM25CB3EWG5 89 aa8.98□□□□□ -0.97
SS18-205ENST00000542420 FAM25GB3EWG6 89 aa8.98□□□□□ -0.97
SS18-205ENST00000542420 E9PI62 339 aa8.98□□□□□ -0.97
SS18-205ENST00000542420 LYRM1O43325 122 aa8.98□□□□□ -0.97
SS18-205ENST00000542420 GSTZ1O43708 216 aaPredicted RBP8.98□□□□□ -0.97
SS18-205ENST00000542420 ITGA10O75578 1167 aa8.98□□□□□ -0.97
SS18-205ENST00000542420 UBL3O95164 117 aa8.98□□□□□ -0.97
SS18-205ENST00000542420 BGLAPP02818 100 aa8.98□□□□□ -0.97
SS18-205ENST00000542420 MRPL3P09001 348 aaKnown RBP8.98□□□□□ -0.97
SS18-205ENST00000542420 CLUP10909 449 aa8.98□□□□□ -0.97
SS18-205ENST00000542420 ELK1P19419 428 aa8.98□□□□□ -0.97
SS18-205ENST00000542420 AZGP1P25311 298 aaKnown RBP8.98□□□□□ -0.97
SS18-205ENST00000542420 CFPP27918 469 aa8.98□□□□□ -0.97
SS18-205ENST00000542420 SHC1P29353 583 aa8.98□□□□□ -0.97
SS18-205ENST00000542420 OR3A3P47888 321 aa8.98□□□□□ -0.97
SS18-205ENST00000542420 PITPNBP48739 271 aa8.98□□□□□ -0.97
SS18-205ENST00000542420 P2RX1P51575 399 aa8.98□□□□□ -0.97
SS18-205ENST00000542420 POLR2HP52434 150 aaKnown RBP8.98□□□□□ -0.97
SS18-205ENST00000542420 OR1D5P58170 312 aa8.98□□□□□ -0.97
SS18-205ENST00000542420 EGR4Q05215 589 aa8.98□□□□□ -0.97
SS18-205ENST00000542420 MFSD13AQ14CX5 517 aa8.98□□□□□ -0.97
SS18-205ENST00000542420 IDNKQ5T6J7 187 aa8.98□□□□□ -0.97
SS18-205ENST00000542420 ARHGAP40Q5TG30 622 aa8.98□□□□□ -0.97
SS18-205ENST00000542420 FAM205BPQ63HN1 556 aa8.98□□□□□ -0.97
SS18-205ENST00000542420 BICRALQ6AI39 1079 aa8.98□□□□□ -0.97
SS18-205ENST00000542420 TMEM71Q6P5X7 295 aa8.98□□□□□ -0.97
SS18-205ENST00000542420 PLET1Q6UQ28 207 aa8.98□□□□□ -0.97
SS18-205ENST00000542420 MAMDC2Q7Z304 686 aaPredicted RBP8.98□□□□□ -0.97
SS18-205ENST00000542420 FAM220AQ7Z4H9 259 aa8.98□□□□□ -0.97
SS18-205ENST00000542420 OR5J2Q8NH18 312 aa8.98□□□□□ -0.97
SS18-205ENST00000542420 OR8K3Q8NH51 312 aa8.98□□□□□ -0.97
SS18-205ENST00000542420 LILRB1Q8NHL6 650 aaPredicted RBP8.98□□□□□ -0.97
SS18-205ENST00000542420 MOSPD2Q8NHP6 518 aa8.98□□□□□ -0.97
SS18-205ENST00000542420 CREB3L1Q96BA8 519 aa8.98□□□□□ -0.97
SS18-205ENST00000542420 ZMYND19Q96E35 227 aaPredicted RBP8.98□□□□□ -0.97
SS18-205ENST00000542420 MARVELD1Q9BSK0 173 aa8.98□□□□□ -0.97
SS18-205ENST00000542420 ALG12Q9BV10 488 aa8.98□□□□□ -0.97
SS18-205ENST00000542420 OR8D2Q9GZM6 311 aa8.98□□□□□ -0.97
SS18-205ENST00000542420 SLA2Q9H6Q3 261 aa8.98□□□□□ -0.97
SS18-205ENST00000542420 COPZ2Q9P299 210 aa8.98□□□□□ -0.97
SS18-205ENST00000542420 TEKT2Q9UIF3 430 aa8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms