RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 LPAR4Q99677 370 aa15.41■□□□□ 0.06
USP28-208ENST00000540438 ZNF222Q9UK12 451 aa15.41■□□□□ 0.06
USP28-208ENST00000540438 PLPP2O43688 288 aa15.41■□□□□ 0.06
USP28-208ENST00000540438 ALG10Q5BKT4 473 aa15.41■□□□□ 0.06
USP28-208ENST00000540438 EXOSC6Q5RKV6 272 aaKnown RBP15.41■□□□□ 0.06
USP28-208ENST00000540438 JAZF1Q86VZ6 243 aa15.41■□□□□ 0.06
USP28-208ENST00000540438 RFT1Q96AA3 541 aa15.41■□□□□ 0.06
USP28-208ENST00000540438 TCTN2Q96GX1 697 aa15.41■□□□□ 0.06
USP28-208ENST00000540438 GDF15Q99988 308 aa15.41■□□□□ 0.06
USP28-208ENST00000540438 LMF2Q9BU23 707 aaKnown RBP15.41■□□□□ 0.06
USP28-208ENST00000540438 CLPSP04118 112 aa15.4■□□□□ 0.06
USP28-208ENST00000540438 UBL4AP11441 157 aa15.4■□□□□ 0.06
USP28-208ENST00000540438 F8A1P23610 371 aa15.4■□□□□ 0.06
USP28-208ENST00000540438 RPL18Q07020 188 aaKnown RBP15.4■□□□□ 0.06
USP28-208ENST00000540438 DMKNQ6E0U4 476 aaPredicted RBP15.4■□□□□ 0.06
USP28-208ENST00000540438 FCRLAQ7L513 359 aa15.4■□□□□ 0.06
USP28-208ENST00000540438 SIAH3Q8IW03 269 aa15.4■□□□□ 0.06
USP28-208ENST00000540438 CPED1A4D0V7 1026 aa15.4■□□□□ 0.06
USP28-208ENST00000540438 HMX3A6NHT5 357 aa15.4■□□□□ 0.06
USP28-208ENST00000540438 MPZL1O95297 269 aa15.4■□□□□ 0.06
USP28-208ENST00000540438 ARSBP15848 533 aa15.4■□□□□ 0.06
USP28-208ENST00000540438 PITPNBP48739 271 aa15.4■□□□□ 0.06
USP28-208ENST00000540438 GBX2P52951 348 aaPredicted RBP15.4■□□□□ 0.06
USP28-208ENST00000540438 RPS11P62280 158 aaKnown RBP eCLIP15.4■□□□□ 0.06
USP28-208ENST00000540438 NTRK2Q16620 822 aa15.4■□□□□ 0.06
USP28-208ENST00000540438 LYPD8Q6UX82 237 aa15.4■□□□□ 0.06
USP28-208ENST00000540438 LINGO2Q7L985 606 aa15.4■□□□□ 0.06
USP28-208ENST00000540438 ZNF550Q7Z398 422 aa15.4■□□□□ 0.06
USP28-208ENST00000540438 FAM181AQ8N9Y4 354 aa15.4■□□□□ 0.06
USP28-208ENST00000540438 OR2I1PQ8NGU4 316 aa15.4■□□□□ 0.06
USP28-208ENST00000540438 GRPEL2Q8TAA5 225 aa15.4■□□□□ 0.06
USP28-208ENST00000540438 SLC2A12Q8TD20 617 aa15.4■□□□□ 0.06
USP28-208ENST00000540438 PHF3Q92576 2039 aaKnown RBP15.39■□□□□ 0.06
USP28-208ENST00000540438 SMAD9O15198 467 aaKnown RBP15.39■□□□□ 0.05
USP28-208ENST00000540438 NSA2O95478 260 aaKnown RBP15.39■□□□□ 0.05
USP28-208ENST00000540438 ADH7P40394 386 aa15.39■□□□□ 0.05
USP28-208ENST00000540438 SLC37A1P57057 533 aa15.39■□□□□ 0.05
USP28-208ENST00000540438 CDK5R1Q15078 307 aa15.39■□□□□ 0.05
USP28-208ENST00000540438 FCN2Q15485 313 aa15.39■□□□□ 0.05
USP28-208ENST00000540438 ZNF595Q8IYB9 648 aa15.39■□□□□ 0.05
USP28-208ENST00000540438 OR6V1Q8N148 313 aa15.39■□□□□ 0.05
USP28-208ENST00000540438 OR6C4Q8NGE1 309 aa15.39■□□□□ 0.05
USP28-208ENST00000540438 ZNF426Q9BUY5 554 aa15.39■□□□□ 0.05
USP28-208ENST00000540438 TMEM185BQ9H7F4 350 aa15.39■□□□□ 0.05
USP28-208ENST00000540438 ISYNA1Q9NPH2 558 aa15.39■□□□□ 0.05
USP28-208ENST00000540438 KLK11Q9UBX7 282 aa15.39■□□□□ 0.05
USP28-208ENST00000540438 FBXL21Q9UKT6 434 aa15.39■□□□□ 0.05
USP28-208ENST00000540438 PLCL2Q9UPR0 1127 aa15.39■□□□□ 0.05
USP28-208ENST00000540438 POLHQ9Y253 713 aa15.39■□□□□ 0.05
USP28-208ENST00000540438 ZNF749O43361 778 aa15.39■□□□□ 0.05
USP28-208ENST00000540438 MTNR1BP49286 362 aa15.39■□□□□ 0.05
USP28-208ENST00000540438 ZNF117Q03924 483 aa15.39■□□□□ 0.05
USP28-208ENST00000540438 EFR3AQ14156 821 aa15.39■□□□□ 0.05
USP28-208ENST00000540438 MZT2BQ6NZ67 158 aa15.39■□□□□ 0.05
USP28-208ENST00000540438 ZCCHC12Q6PEW1 402 aa15.39■□□□□ 0.05
USP28-208ENST00000540438 LRRN1Q6UXK5 716 aa15.39■□□□□ 0.05
USP28-208ENST00000540438 G6PC3Q9BUM1 346 aa15.39■□□□□ 0.05
USP28-208ENST00000540438 SLC7A5P2Q9GIP4 190 aa15.39■□□□□ 0.05
USP28-208ENST00000540438 VDAC3Q9Y277 283 aa15.39■□□□□ 0.05
USP28-208ENST00000540438 A0A0A6YYJ9 748 aa15.38■□□□□ 0.05
USP28-208ENST00000540438 NPIPB9F8W1W9 429 aa15.38■□□□□ 0.05
USP28-208ENST00000540438 FLRT2O43155 660 aa15.38■□□□□ 0.05
USP28-208ENST00000540438 AKR7A3O95154 331 aa15.38■□□□□ 0.05
USP28-208ENST00000540438 TMEM255AQ5JRV8 349 aa15.38■□□□□ 0.05
USP28-208ENST00000540438 NOXA1Q86UR1 476 aa15.38■□□□□ 0.05
USP28-208ENST00000540438 TOR1AIP2Q8NFQ8 470 aa15.38■□□□□ 0.05
USP28-208ENST00000540438 DUSP19Q8WTR2 217 aa15.38■□□□□ 0.05
USP28-208ENST00000540438 RGP1Q92546 391 aaPredicted RBP15.38■□□□□ 0.05
USP28-208ENST00000540438 SOSTQ9BQB4 213 aa15.38■□□□□ 0.05
USP28-208ENST00000540438 HSPB11Q9Y547 144 aa15.38■□□□□ 0.05
USP28-208ENST00000540438 LRP4O75096 1905 aa15.38■□□□□ 0.05
USP28-208ENST00000540438 SRPX2O60687 465 aaPredicted RBP15.38■□□□□ 0.05
USP28-208ENST00000540438 ZNF354AO60765 605 aaPredicted RBP15.38■□□□□ 0.05
USP28-208ENST00000540438 OR7A10O76100 309 aa15.38■□□□□ 0.05
USP28-208ENST00000540438 AK1P00568 194 aa15.38■□□□□ 0.05
USP28-208ENST00000540438 EPXP11678 715 aa15.38■□□□□ 0.05
USP28-208ENST00000540438 CXCL3P19876 107 aa15.38■□□□□ 0.05
USP28-208ENST00000540438 TMEM44Q2T9K0 475 aa15.38■□□□□ 0.05
USP28-208ENST00000540438 ARHGAP40Q5TG30 622 aa15.38■□□□□ 0.05
USP28-208ENST00000540438 YOD1Q5VVQ6 348 aaPredicted RBP15.38■□□□□ 0.05
USP28-208ENST00000540438 LIPNQ5VXI9 398 aa15.38■□□□□ 0.05
USP28-208ENST00000540438 LSMEM1Q8N8F7 131 aa15.38■□□□□ 0.05
USP28-208ENST00000540438 OR5M1Q8NGP8 315 aa15.38■□□□□ 0.05
USP28-208ENST00000540438 CYSLTR2Q9NS75 346 aa15.38■□□□□ 0.05
USP28-208ENST00000540438 C14orf105Q9NVL8 296 aa15.38■□□□□ 0.05
USP28-208ENST00000540438 MAP1BP46821 2468 aaKnown RBP15.38■□□□□ 0.05
USP28-208ENST00000540438 ZNF264O43296 627 aa15.38■□□□□ 0.05
USP28-208ENST00000540438 WNT11O96014 354 aa15.38■□□□□ 0.05
USP28-208ENST00000540438 HLA-DOBP13765 273 aa15.38■□□□□ 0.05
USP28-208ENST00000540438 INPP5JQ15735 1006 aaPredicted RBP15.38■□□□□ 0.05
USP28-208ENST00000540438 HSD17B12Q53GQ0 312 aa15.38■□□□□ 0.05
USP28-208ENST00000540438 KLHL26Q53HC5 615 aa15.38■□□□□ 0.05
USP28-208ENST00000540438 TMPRSS9Q7Z410 1059 aa15.38■□□□□ 0.05
USP28-208ENST00000540438 SIX5Q8N196 739 aa15.38■□□□□ 0.05
USP28-208ENST00000540438 C8orf44Q96CB5 159 aa15.38■□□□□ 0.05
USP28-208ENST00000540438 CITED4Q96RK1 184 aa15.38■□□□□ 0.05
USP28-208ENST00000540438 GFI1Q99684 422 aa15.38■□□□□ 0.05
USP28-208ENST00000540438 LANCL2Q9NS86 450 aa15.38■□□□□ 0.05
USP28-208ENST00000540438 GRHPRQ9UBQ7 328 aa15.38■□□□□ 0.05
USP28-208ENST00000540438 KCNG2Q9UJ96 466 aa15.38■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms