RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 HIKESHIQ53FT3 197 aa9.33□□□□□ -0.92
CD44-227ENST00000528086 ULK3Q6PHR2 472 aa9.33□□□□□ -0.92
CD44-227ENST00000528086 C20orf204Q6ZNR8 217 aa9.33□□□□□ -0.92
CD44-227ENST00000528086 AAED1Q7RTV5 226 aa9.33□□□□□ -0.92
CD44-227ENST00000528086 GPAT4Q86UL3 456 aa9.33□□□□□ -0.92
CD44-227ENST00000528086 MYPOPQ86VE0 399 aaPredicted RBP9.33□□□□□ -0.92
CD44-227ENST00000528086 ELOA3Q8NG57 546 aa9.33□□□□□ -0.92
CD44-227ENST00000528086 OR8J3Q8NGG0 315 aa9.33□□□□□ -0.92
CD44-227ENST00000528086 DNAJA4Q8WW22 397 aaPredicted RBP9.33□□□□□ -0.92
CD44-227ENST00000528086 BCL2L2Q92843 193 aaPredicted RBP9.33□□□□□ -0.92
CD44-227ENST00000528086 RCN3Q96D15 328 aa9.33□□□□□ -0.92
CD44-227ENST00000528086 TXNDC15Q96J42 360 aa9.33□□□□□ -0.92
CD44-227ENST00000528086 ZNF607Q96SK3 696 aa9.33□□□□□ -0.92
CD44-227ENST00000528086 MCHR1Q99705 422 aa9.33□□□□□ -0.92
CD44-227ENST00000528086 CCL19Q99731 98 aa9.33□□□□□ -0.92
CD44-227ENST00000528086 SPATA5L1Q9BVQ7 753 aa9.33□□□□□ -0.92
CD44-227ENST00000528086 GSX2Q9BZM3 304 aa9.33□□□□□ -0.92
CD44-227ENST00000528086 MYLK2Q9H1R3 596 aa9.33□□□□□ -0.92
CD44-227ENST00000528086 SLCO5A1Q9H2Y9 848 aa9.33□□□□□ -0.92
CD44-227ENST00000528086 SEC61A2Q9H9S3 476 aa9.33□□□□□ -0.92
CD44-227ENST00000528086 MED4Q9NPJ6 270 aa9.33□□□□□ -0.92
CD44-227ENST00000528086 SLC17A5Q9NRA2 495 aa9.33□□□□□ -0.92
CD44-227ENST00000528086 RASD1Q9Y272 281 aa9.33□□□□□ -0.92
CD44-227ENST00000528086 TRAV36DV7A0A075B6V5 113 aa9.32□□□□□ -0.92
CD44-227ENST00000528086 PRORSD1PA6NEY8 169 aa9.32□□□□□ -0.92
CD44-227ENST00000528086 CLOCKO15516 846 aa9.32□□□□□ -0.92
CD44-227ENST00000528086 FMO6PO60774 539 aa9.32□□□□□ -0.92
CD44-227ENST00000528086 SHOX2O60902 331 aaPredicted RBP9.32□□□□□ -0.92
CD44-227ENST00000528086 SERPINB7O75635 380 aa9.32□□□□□ -0.92
CD44-227ENST00000528086 C8BP07358 591 aa9.32□□□□□ -0.92
CD44-227ENST00000528086 CD40P25942 277 aa9.32□□□□□ -0.92
CD44-227ENST00000528086 MPGP29372 298 aa9.32□□□□□ -0.92
CD44-227ENST00000528086 PTH2RP49190 550 aa9.32□□□□□ -0.92
CD44-227ENST00000528086 ZNF83P51522 516 aa9.32□□□□□ -0.92
CD44-227ENST00000528086 GYS2P54840 703 aa9.32□□□□□ -0.92
CD44-227ENST00000528086 CLDN17P56750 224 aa9.32□□□□□ -0.92
CD44-227ENST00000528086 ENTPD8Q5MY95 495 aa9.32□□□□□ -0.92
CD44-227ENST00000528086 Q5PR19 223 aa9.32□□□□□ -0.92
CD44-227ENST00000528086 FAM69AQ5T7M9 428 aa9.32□□□□□ -0.92
CD44-227ENST00000528086 TMEM225Q6GV28 225 aa9.32□□□□□ -0.92
CD44-227ENST00000528086 ZNF613Q6PF04 617 aa9.32□□□□□ -0.92
CD44-227ENST00000528086 TSEN54Q7Z6J9 526 aaKnown RBP9.32□□□□□ -0.92
CD44-227ENST00000528086 P2RY8Q86VZ1 359 aa9.32□□□□□ -0.92
CD44-227ENST00000528086 SLC15A3Q8IY34 581 aa9.32□□□□□ -0.92
CD44-227ENST00000528086 LRRC75A-AS1Q8N1F1 130 aa9.32□□□□□ -0.92
CD44-227ENST00000528086 LRRC17Q8N6Y2 441 aa9.32□□□□□ -0.92
CD44-227ENST00000528086 VANGL1Q8TAA9 524 aaPredicted RBP9.32□□□□□ -0.92
CD44-227ENST00000528086 ADAMTS16Q8TE57 1224 aa9.32□□□□□ -0.92
CD44-227ENST00000528086 PIGTQ969N2 578 aa9.32□□□□□ -0.92
CD44-227ENST00000528086 SLC47A1Q96FL8 570 aa9.32□□□□□ -0.92
CD44-227ENST00000528086 PERPQ96FX8 193 aa9.32□□□□□ -0.92
CD44-227ENST00000528086 OXGR1Q96P68 337 aa9.32□□□□□ -0.92
CD44-227ENST00000528086 ALKBH3Q96Q83 286 aaPredicted RBP9.32□□□□□ -0.92
CD44-227ENST00000528086 OR2M2Q96R28 347 aa9.32□□□□□ -0.92
CD44-227ENST00000528086 TMEM43Q9BTV4 400 aa9.32□□□□□ -0.92
CD44-227ENST00000528086 TAPBPLQ9BX59 468 aa9.32□□□□□ -0.92
CD44-227ENST00000528086 ARMC7Q9H6L4 198 aa9.32□□□□□ -0.92
CD44-227ENST00000528086 FANCFQ9NPI8 374 aa9.32□□□□□ -0.92
CD44-227ENST00000528086 MEPEQ9NQ76 525 aaPredicted RBP9.32□□□□□ -0.92
CD44-227ENST00000528086 MAGED1Q9Y5V3 778 aaPredicted RBP9.32□□□□□ -0.92
CD44-227ENST00000528086 NAV3Q8IVL0 2385 aa9.31□□□□□ -0.92
CD44-227ENST00000528086 TRIM64A6NGJ6 449 aa9.31□□□□□ -0.92
CD44-227ENST00000528086 TRIM64BA6NI03 449 aa9.31□□□□□ -0.92
CD44-227ENST00000528086 CPSF4LA6NMK7 179 aaKnown RBP9.31□□□□□ -0.92
CD44-227ENST00000528086 RPL36A-HNRNPH2H7BZ11 118 aa9.31□□□□□ -0.92
CD44-227ENST00000528086 NME4O00746 187 aa9.31□□□□□ -0.92
CD44-227ENST00000528086 PLPP3O14495 311 aa9.31□□□□□ -0.92
CD44-227ENST00000528086 ABCD4O14678 606 aa9.31□□□□□ -0.92
CD44-227ENST00000528086 SMPD2O60906 423 aa9.31□□□□□ -0.92
CD44-227ENST00000528086 VAMP5O95183 116 aa9.31□□□□□ -0.92
CD44-227ENST00000528086 CD3EP07766 207 aa9.31□□□□□ -0.92
CD44-227ENST00000528086 DRD4P21917 467 aa9.31□□□□□ -0.92
CD44-227ENST00000528086 TUBA1BP68363 451 aa9.31□□□□□ -0.92
CD44-227ENST00000528086 TUBA4AP68366 448 aa9.31□□□□□ -0.92
CD44-227ENST00000528086 CYLC2Q14093 348 aaPredicted RBP9.31□□□□□ -0.92
CD44-227ENST00000528086 C11orf71Q6IPW1 123 aa9.31□□□□□ -0.92
CD44-227ENST00000528086 NIPAL3Q6P499 406 aa9.31□□□□□ -0.92
CD44-227ENST00000528086 DNM1P46Q6ZS02 220 aa9.31□□□□□ -0.92
CD44-227ENST00000528086 TUBA1AQ71U36 451 aa9.31□□□□□ -0.92
CD44-227ENST00000528086 H1FNTQ75WM6 255 aaPredicted RBP9.31□□□□□ -0.92
CD44-227ENST00000528086 SLC46A3Q7Z3Q1 461 aa9.31□□□□□ -0.92
CD44-227ENST00000528086 PATL1Q86TB9 770 aaKnown RBP9.31□□□□□ -0.92
CD44-227ENST00000528086 DTX2Q86UW9 622 aa9.31□□□□□ -0.92
CD44-227ENST00000528086 NKAIN4Q8IVV8 208 aa9.31□□□□□ -0.92
CD44-227ENST00000528086 ADPRHL1Q8NDY3 354 aa9.31□□□□□ -0.92
CD44-227ENST00000528086 C1orf162Q8NEQ5 155 aaPredicted RBP9.31□□□□□ -0.92
CD44-227ENST00000528086 OR1K1Q8NGR3 316 aa9.31□□□□□ -0.92
CD44-227ENST00000528086 OR6S1Q8NH40 331 aa9.31□□□□□ -0.92
CD44-227ENST00000528086 USB1Q9BQ65 265 aaKnown RBP9.31□□□□□ -0.92
CD44-227ENST00000528086 TRAF4Q9BUZ4 470 aaPredicted RBP9.31□□□□□ -0.92
CD44-227ENST00000528086 EMC6Q9BV81 110 aa9.31□□□□□ -0.92
CD44-227ENST00000528086 LINC00470Q9BZP3 86 aa9.31□□□□□ -0.92
CD44-227ENST00000528086 ESRP2Q9H6T0 727 aaKnown RBP9.31□□□□□ -0.92
CD44-227ENST00000528086 TMEM27Q9HBJ8 222 aa9.31□□□□□ -0.92
CD44-227ENST00000528086 NOX3Q9HBY0 568 aa9.31□□□□□ -0.92
CD44-227ENST00000528086 PARPBPQ9NWS1 579 aa9.31□□□□□ -0.92
CD44-227ENST00000528086 TAS2R5Q9NYW4 299 aa9.31□□□□□ -0.92
CD44-227ENST00000528086 RPS6KB2Q9UBS0 482 aa9.31□□□□□ -0.92
CD44-227ENST00000528086 LAMP3Q9UQV4 416 aa9.31□□□□□ -0.92
CD44-227ENST00000528086 B3GALT5Q9Y2C3 310 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms