RNA–Protein interactions for RNA: ENST00000473376.1

CHD3-209, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 562 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-209ENST00000473376 BBS10Q8TAM1 723 aa11.79□□□□□ -0.52
CHD3-209ENST00000473376 PNPT1Q8TCS8 783 aaKnown RBP11.79□□□□□ -0.52
CHD3-209ENST00000473376 DNAJA4Q8WW22 397 aaPredicted RBP11.79□□□□□ -0.52
CHD3-209ENST00000473376 NANOS1Q8WY41 292 aaKnown RBP11.79□□□□□ -0.52
CHD3-209ENST00000473376 TMEM19Q96HH6 336 aa11.79□□□□□ -0.52
CHD3-209ENST00000473376 OXGR1Q96P68 337 aa11.79□□□□□ -0.52
CHD3-209ENST00000473376 SHARPINQ9H0F6 387 aa11.79□□□□□ -0.52
CHD3-209ENST00000473376 DENND2DQ9H6A0 471 aaPredicted RBP11.79□□□□□ -0.52
CHD3-209ENST00000473376 SLC6A13Q9NSD5 602 aa11.79□□□□□ -0.52
CHD3-209ENST00000473376 ADPRHL2Q9NX46 363 aa11.79□□□□□ -0.52
CHD3-209ENST00000473376 TMEM120BA0PK00 339 aa11.78□□□□□ -0.52
CHD3-209ENST00000473376 UBDO15205 165 aa11.78□□□□□ -0.52
CHD3-209ENST00000473376 AKAP8O43823 692 aaKnown RBP11.78□□□□□ -0.52
CHD3-209ENST00000473376 TGDSO95455 350 aa11.78□□□□□ -0.52
CHD3-209ENST00000473376 ERCC1P07992 297 aaPredicted RBP11.78□□□□□ -0.52
CHD3-209ENST00000473376 ZNF43P17038 809 aa11.78□□□□□ -0.52
CHD3-209ENST00000473376 PPIBP23284 216 aaKnown RBP11.78□□□□□ -0.52
CHD3-209ENST00000473376 GIFP27352 417 aa11.78□□□□□ -0.52
CHD3-209ENST00000473376 ARR3P36575 388 aa11.78□□□□□ -0.52
CHD3-209ENST00000473376 SELENOPP49908 381 aa11.78□□□□□ -0.52
CHD3-209ENST00000473376 POLR2JP52435 117 aaKnown RBP11.78□□□□□ -0.52
CHD3-209ENST00000473376 EGR4Q05215 589 aa11.78□□□□□ -0.52
CHD3-209ENST00000473376 ADIPOQQ15848 244 aa11.78□□□□□ -0.52
CHD3-209ENST00000473376 ZNF311Q5JNZ3 666 aa11.78□□□□□ -0.52
CHD3-209ENST00000473376 FAM69AQ5T7M9 428 aa11.78□□□□□ -0.52
CHD3-209ENST00000473376 FAM91A1Q658Y4 838 aa11.78□□□□□ -0.52
CHD3-209ENST00000473376 FAM166AQ6J272 317 aa11.78□□□□□ -0.52
CHD3-209ENST00000473376 PHC2Q8IXK0 858 aa11.78□□□□□ -0.52
CHD3-209ENST00000473376 MIER2Q8N344 545 aa11.78□□□□□ -0.52
CHD3-209ENST00000473376 NEU4Q8WWR8 484 aaPredicted RBP11.78□□□□□ -0.52
CHD3-209ENST00000473376 GTF2H4Q92759 462 aa11.78□□□□□ -0.52
CHD3-209ENST00000473376 HPS1Q92902 700 aa11.78□□□□□ -0.52
CHD3-209ENST00000473376 DNAJA3Q96EY1 480 aa11.78□□□□□ -0.52
CHD3-209ENST00000473376 LRR1Q96L50 414 aa11.78□□□□□ -0.52
CHD3-209ENST00000473376 ANKRD27Q96NW4 1050 aa11.78□□□□□ -0.52
CHD3-209ENST00000473376 PAIP2Q9BPZ3 127 aaKnown RBP11.78□□□□□ -0.52
CHD3-209ENST00000473376 PTDSS2Q9BVG9 487 aa11.78□□□□□ -0.52
CHD3-209ENST00000473376 SPATA5L1Q9BVQ7 753 aa11.78□□□□□ -0.52
CHD3-209ENST00000473376 RAB1BQ9H0U4 201 aa11.78□□□□□ -0.52
CHD3-209ENST00000473376 CENPHQ9H3R5 247 aa11.78□□□□□ -0.52
CHD3-209ENST00000473376 MANSC1Q9H8J5 431 aa11.78□□□□□ -0.52
CHD3-209ENST00000473376 CORINQ9Y5Q5 1042 aa11.78□□□□□ -0.52
CHD3-209ENST00000473376 CLIC1O00299 241 aa11.77□□□□□ -0.53
CHD3-209ENST00000473376 AIM2O14862 343 aa11.77□□□□□ -0.53
CHD3-209ENST00000473376 PHF1O43189 567 aaPredicted RBP11.77□□□□□ -0.53
CHD3-209ENST00000473376 SLC43A1O75387 559 aa11.77□□□□□ -0.53
CHD3-209ENST00000473376 LGI1O95970 557 aa11.77□□□□□ -0.53
CHD3-209ENST00000473376 CECR9P0C854 216 aa11.77□□□□□ -0.53
CHD3-209ENST00000473376 PRG2P13727 222 aa11.77□□□□□ -0.53
CHD3-209ENST00000473376 GTF2E2P29084 291 aaKnown RBP11.77□□□□□ -0.53
CHD3-209ENST00000473376 EVX1P49640 407 aa11.77□□□□□ -0.53
CHD3-209ENST00000473376 IDH3GP51553 393 aaPredicted RBP11.77□□□□□ -0.53
CHD3-209ENST00000473376 BNIP2Q12982 314 aa11.77□□□□□ -0.53
CHD3-209ENST00000473376 LRIF1Q5T3J3 769 aa11.77□□□□□ -0.53
CHD3-209ENST00000473376 NIPAL3Q6P499 406 aa11.77□□□□□ -0.53
CHD3-209ENST00000473376 H1FNTQ75WM6 255 aaPredicted RBP11.77□□□□□ -0.53
CHD3-209ENST00000473376 ZNF627Q7L945 461 aa11.77□□□□□ -0.53
CHD3-209ENST00000473376 SERPINA11Q86U17 422 aa11.77□□□□□ -0.53
CHD3-209ENST00000473376 PIK3C3Q8NEB9 887 aa11.77□□□□□ -0.53
CHD3-209ENST00000473376 SLC38A4Q969I6 547 aa11.77□□□□□ -0.53
CHD3-209ENST00000473376 FBXO17Q96EF6 278 aa11.77□□□□□ -0.53
CHD3-209ENST00000473376 SLC41A3Q96GZ6 507 aa11.77□□□□□ -0.53
CHD3-209ENST00000473376 SORCS2Q96PQ0 1159 aa11.77□□□□□ -0.53
CHD3-209ENST00000473376 NKIRAS1Q9NYS0 192 aa11.77□□□□□ -0.53
CHD3-209ENST00000473376 B3GAT1Q9P2W7 334 aa11.77□□□□□ -0.53
CHD3-209ENST00000473376 KCNS2Q9ULS6 477 aa11.77□□□□□ -0.53
CHD3-209ENST00000473376 PCDHB14Q9Y5E9 798 aa11.77□□□□□ -0.53
CHD3-209ENST00000473376 HEATR1Q9H583 2144 aaKnown RBP11.77□□□□□ -0.53
CHD3-209ENST00000473376 PRORSD1PA6NEY8 169 aa11.76□□□□□ -0.53
CHD3-209ENST00000473376 UPK3AO75631 287 aa11.76□□□□□ -0.53
CHD3-209ENST00000473376 OR4A8P0C604 315 aa11.76□□□□□ -0.53
CHD3-209ENST00000473376 ZNF23P17027 643 aa11.76□□□□□ -0.53
CHD3-209ENST00000473376 HOXB9P17482 250 aaPredicted RBP11.76□□□□□ -0.53
CHD3-209ENST00000473376 CDH2P19022 906 aaPredicted RBP11.76□□□□□ -0.53
CHD3-209ENST00000473376 HNF1AP20823 631 aa11.76□□□□□ -0.53
CHD3-209ENST00000473376 ROR2Q01974 943 aaKnown RBP11.76□□□□□ -0.53
CHD3-209ENST00000473376 C6orf10Q5SRN2 563 aa11.76□□□□□ -0.53
CHD3-209ENST00000473376 SWT1Q5T5J6 900 aaKnown RBP11.76□□□□□ -0.53
CHD3-209ENST00000473376 NXNQ6DKJ4 435 aa11.76□□□□□ -0.53
CHD3-209ENST00000473376 ULK3Q6PHR2 472 aa11.76□□□□□ -0.53
CHD3-209ENST00000473376 DHRS4L2Q6PKH6 230 aa11.76□□□□□ -0.53
CHD3-209ENST00000473376 LINGO2Q7L985 606 aa11.76□□□□□ -0.53
CHD3-209ENST00000473376 SLC46A3Q7Z3Q1 461 aa11.76□□□□□ -0.53
CHD3-209ENST00000473376 SNX32Q86XE0 403 aa11.76□□□□□ -0.53
CHD3-209ENST00000473376 KRT73Q86Y46 540 aa11.76□□□□□ -0.53
CHD3-209ENST00000473376 GOLGA6L1Q8N7Z2 621 aa11.76□□□□□ -0.53
CHD3-209ENST00000473376 SCAIQ8N9R8 606 aa11.76□□□□□ -0.53
CHD3-209ENST00000473376 ALKBH3Q96Q83 286 aaPredicted RBP11.76□□□□□ -0.53
CHD3-209ENST00000473376 EPYCQ99645 322 aa11.76□□□□□ -0.53
CHD3-209ENST00000473376 PAIP1Q9H074 479 aaKnown RBP11.76□□□□□ -0.53
CHD3-209ENST00000473376 NELFAQ9H3P2 528 aa11.76□□□□□ -0.53
CHD3-209ENST00000473376 RPS6KB2Q9UBS0 482 aa11.76□□□□□ -0.53
CHD3-209ENST00000473376 CORO2BQ9UQ03 480 aa11.76□□□□□ -0.53
CHD3-209ENST00000473376 YLPM1P49750 1951 aaKnown RBP11.76□□□□□ -0.53
CHD3-209ENST00000473376 ARFGEF3Q5TH69 2177 aa11.75□□□□□ -0.53
CHD3-209ENST00000473376 TRAV36DV7A0A075B6V5 113 aa11.75□□□□□ -0.53
CHD3-209ENST00000473376 ZNF99A8MXY4 864 aaPredicted RBP11.75□□□□□ -0.53
CHD3-209ENST00000473376 ZNF500O60304 480 aaPredicted RBP11.75□□□□□ -0.53
CHD3-209ENST00000473376 TACSTD2P09758 323 aa11.75□□□□□ -0.53
CHD3-209ENST00000473376 KITP10721 976 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms