RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 TCTN2Q96GX1 697 aa9.07□□□□□ -0.96
USP54-205ENST00000424265 OR14A2Q96R54 314 aa9.07□□□□□ -0.96
USP54-205ENST00000424265 TMED9Q9BVK6 235 aa9.07□□□□□ -0.96
USP54-205ENST00000424265 ABI3Q9P2A4 366 aa9.07□□□□□ -0.96
USP54-205ENST00000424265 GDF2Q9UK05 429 aaPredicted RBP9.07□□□□□ -0.96
USP54-205ENST00000424265 A0A1B0GVT2 93 aa9.06□□□□□ -0.96
USP54-205ENST00000424265 FOXE1O00358 373 aaPredicted RBP9.06□□□□□ -0.96
USP54-205ENST00000424265 PRKYO43930 277 aa9.06□□□□□ -0.96
USP54-205ENST00000424265 CEACAM5P06731 702 aa9.06□□□□□ -0.96
USP54-205ENST00000424265 ANKRD34AQ69YU3 496 aa9.06□□□□□ -0.96
USP54-205ENST00000424265 SBSNQ6UWP8 590 aa9.06□□□□□ -0.96
USP54-205ENST00000424265 SYT14Q8NB59 555 aa9.06□□□□□ -0.96
USP54-205ENST00000424265 CCDC107Q8WV48 283 aa9.06□□□□□ -0.96
USP54-205ENST00000424265 PRRC2BQ5JSZ5 2229 aaKnown RBP9.06□□□□□ -0.96
USP54-205ENST00000424265 SGK494L7N484 410 aa9.06□□□□□ -0.96
USP54-205ENST00000424265 GGCTO75223 188 aaKnown RBP9.06□□□□□ -0.96
USP54-205ENST00000424265 TGFB1P01137 390 aa9.06□□□□□ -0.96
USP54-205ENST00000424265 SDHAP31040 664 aa9.06□□□□□ -0.96
USP54-205ENST00000424265 S100A7P31151 101 aa9.06□□□□□ -0.96
USP54-205ENST00000424265 GLYR1Q49A26 553 aaPredicted RBP9.06□□□□□ -0.96
USP54-205ENST00000424265 FAM69AQ5T7M9 428 aa9.06□□□□□ -0.96
USP54-205ENST00000424265 FAM180AQ6UWF9 173 aa9.06□□□□□ -0.96
USP54-205ENST00000424265 ZNF705AQ6ZN79 300 aaPredicted RBP9.06□□□□□ -0.96
USP54-205ENST00000424265 THNSL2Q86YJ6 484 aa9.06□□□□□ -0.96
USP54-205ENST00000424265 FAM216AQ8WUB2 273 aa9.06□□□□□ -0.96
USP54-205ENST00000424265 C7orf34Q96L11 122 aa9.06□□□□□ -0.96
USP54-205ENST00000424265 ZFP3Q96NJ6 502 aa9.06□□□□□ -0.96
USP54-205ENST00000424265 MAGIXQ9H6Y5 334 aa9.06□□□□□ -0.96
USP54-205ENST00000424265 C1orf226A1L170 272 aa9.06□□□□□ -0.96
USP54-205ENST00000424265 LILRA5A6NI73 299 aa9.06□□□□□ -0.96
USP54-205ENST00000424265 LRRTM2O43300 516 aa9.06□□□□□ -0.96
USP54-205ENST00000424265 MATN4O95460 622 aa9.06□□□□□ -0.96
USP54-205ENST00000424265 C6orf47O95873 294 aa9.06□□□□□ -0.96
USP54-205ENST00000424265 JMJD7P0C870 316 aa9.06□□□□□ -0.96
USP54-205ENST00000424265 AK4P27144 223 aaPredicted RBP9.06□□□□□ -0.96
USP54-205ENST00000424265 TSFMP43897 325 aaKnown RBP9.06□□□□□ -0.96
USP54-205ENST00000424265 KHKP50053 298 aa9.06□□□□□ -0.96
USP54-205ENST00000424265 DEFB133Q30KQ1 61 aa9.06□□□□□ -0.96
USP54-205ENST00000424265 ACTBL2Q562R1 376 aa9.06□□□□□ -0.96
USP54-205ENST00000424265 ZNF385CQ66K41 422 aaPredicted RBP9.06□□□□□ -0.96
USP54-205ENST00000424265 FAM185AQ8N0U4 392 aa9.06□□□□□ -0.96
USP54-205ENST00000424265 NUDT10Q8NFP7 164 aa9.06□□□□□ -0.96
USP54-205ENST00000424265 PYURFQ96I23 114 aa9.06□□□□□ -0.96
USP54-205ENST00000424265 TGM7Q96PF1 710 aa9.06□□□□□ -0.96
USP54-205ENST00000424265 CDK15Q96Q40 435 aa9.06□□□□□ -0.96
USP54-205ENST00000424265 C1GALT1Q9NS00 363 aa9.06□□□□□ -0.96
USP54-205ENST00000424265 TAS2R10Q9NYW0 307 aa9.06□□□□□ -0.96
USP54-205ENST00000424265 GSKIPQ9P0R6 139 aa9.06□□□□□ -0.96
USP54-205ENST00000424265 LRIT1Q9P2V4 623 aa9.06□□□□□ -0.96
USP54-205ENST00000424265 EEDO75530 441 aaKnown RBP9.06□□□□□ -0.96
USP54-205ENST00000424265 IGFBP1P08833 259 aaPredicted RBP9.06□□□□□ -0.96
USP54-205ENST00000424265 GIPP09681 153 aaPredicted RBP9.06□□□□□ -0.96
USP54-205ENST00000424265 RNH1P13489 461 aaKnown RBP9.06□□□□□ -0.96
USP54-205ENST00000424265 POU3F2P20265 443 aaPredicted RBP9.06□□□□□ -0.96
USP54-205ENST00000424265 RAB8AP61006 207 aa9.06□□□□□ -0.96
USP54-205ENST00000424265 DCBLD1Q8N8Z6 715 aa9.06□□□□□ -0.96
USP54-205ENST00000424265 OR56A1Q8NGH5 318 aa9.06□□□□□ -0.96
USP54-205ENST00000424265 OR6K3Q8NGY3 331 aa9.06□□□□□ -0.96
USP54-205ENST00000424265 OR56B4Q8NH76 319 aa9.06□□□□□ -0.96
USP54-205ENST00000424265 ADAMTS15Q8TE58 950 aa9.06□□□□□ -0.96
USP54-205ENST00000424265 GUCD1Q96NT3 240 aa9.06□□□□□ -0.96
USP54-205ENST00000424265 BARHL1Q9BZE3 327 aa9.06□□□□□ -0.96
USP54-205ENST00000424265 FBXW2Q9UKT8 454 aa9.06□□□□□ -0.96
USP54-205ENST00000424265 ICKQ9UPZ9 632 aa9.06□□□□□ -0.96
USP54-205ENST00000424265 SHROOM3Q8TF72 1996 aa9.05□□□□□ -0.96
USP54-205ENST00000424265 LMO7DNF2Z398 122 aa9.05□□□□□ -0.96
USP54-205ENST00000424265 H0YIV9 168 aa9.05□□□□□ -0.96
USP54-205ENST00000424265 SIAH2O43255 324 aa9.05□□□□□ -0.96
USP54-205ENST00000424265 PIAS2O75928 621 aa9.05□□□□□ -0.96
USP54-205ENST00000424265 F10P00742 488 aa9.05□□□□□ -0.96
USP54-205ENST00000424265 THBS4P35443 961 aa9.05□□□□□ -0.96
USP54-205ENST00000424265 GPR3P46089 330 aa9.05□□□□□ -0.96
USP54-205ENST00000424265 TAS2R50P59544 299 aa9.05□□□□□ -0.96
USP54-205ENST00000424265 SPHARQ15513 63 aa9.05□□□□□ -0.96
USP54-205ENST00000424265 C6orf136Q5SQH8 315 aa9.05□□□□□ -0.96
USP54-205ENST00000424265 LKAAEAR1Q8TD35 194 aa9.05□□□□□ -0.96
USP54-205ENST00000424265 CLDN23Q96B33 292 aa9.05□□□□□ -0.96
USP54-205ENST00000424265 IL17FQ96PD4 163 aa9.05□□□□□ -0.96
USP54-205ENST00000424265 OR52A5Q9H2C5 316 aa9.05□□□□□ -0.96
USP54-205ENST00000424265 NDRG4Q9ULP0 352 aaKnown RBP9.05□□□□□ -0.96
USP54-205ENST00000424265 AQP8O94778 261 aa9.05□□□□□ -0.96
USP54-205ENST00000424265 MAPK3P27361 379 aaPredicted RBP9.05□□□□□ -0.96
USP54-205ENST00000424265 BDKRB2P30411 391 aa9.05□□□□□ -0.96
USP54-205ENST00000424265 IFNGR2P38484 337 aa9.05□□□□□ -0.96
USP54-205ENST00000424265 PFN3P60673 137 aa9.05□□□□□ -0.96
USP54-205ENST00000424265 BTN3A2P78410 334 aa9.05□□□□□ -0.96
USP54-205ENST00000424265 GINS1Q14691 196 aa9.05□□□□□ -0.96
USP54-205ENST00000424265 KMT5CQ86Y97 462 aa9.05□□□□□ -0.96
USP54-205ENST00000424265 PAQR8Q8TEZ7 354 aa9.05□□□□□ -0.96
USP54-205ENST00000424265 CNOT9Q92600 299 aaKnown RBP9.05□□□□□ -0.96
USP54-205ENST00000424265 OSTF1Q92882 214 aa9.05□□□□□ -0.96
USP54-205ENST00000424265 R3HDM4Q96D70 268 aa9.05□□□□□ -0.96
USP54-205ENST00000424265 SERINC2Q96SA4 455 aa9.05□□□□□ -0.96
USP54-205ENST00000424265 OR10A4Q9H209 315 aa9.05□□□□□ -0.96
USP54-205ENST00000424265 C20orf202A1L168 122 aa9.05□□□□□ -0.96
USP54-205ENST00000424265 SLC35F4A4IF30 521 aa9.05□□□□□ -0.96
USP54-205ENST00000424265 TLCD2A6NGC4 264 aa9.05□□□□□ -0.96
USP54-205ENST00000424265 OR52A4PA6NMU1 304 aa9.05□□□□□ -0.96
USP54-205ENST00000424265 ZNF587BE7ETH6 402 aa9.05□□□□□ -0.96
USP54-205ENST00000424265 PPP6CO00743 305 aa9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms