RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 ANKRD16Q6P6B7 361 aa10.06□□□□□ -0.8
USP4-204ENST00000416417 WDFY1Q8IWB7 410 aa10.06□□□□□ -0.8
USP4-204ENST00000416417 NFKBIDQ8NI38 313 aa10.06□□□□□ -0.8
USP4-204ENST00000416417 GTF2H4Q92759 462 aa10.06□□□□□ -0.8
USP4-204ENST00000416417 TAAR8Q969N4 342 aa10.06□□□□□ -0.8
USP4-204ENST00000416417 SOX7Q9BT81 388 aa10.06□□□□□ -0.8
USP4-204ENST00000416417 RMND5AQ9H871 391 aa10.06□□□□□ -0.8
USP4-204ENST00000416417 SDR39U1Q9NRG7 319 aaPredicted RBP10.06□□□□□ -0.8
USP4-204ENST00000416417 CA10Q9NS85 328 aa10.06□□□□□ -0.8
USP4-204ENST00000416417 ZIM2Q9NZV7 527 aa10.06□□□□□ -0.8
USP4-204ENST00000416417 SLAMF8Q9P0V8 285 aa10.06□□□□□ -0.8
USP4-204ENST00000416417 RASD1Q9Y272 281 aa10.06□□□□□ -0.8
USP4-204ENST00000416417 PLCE1Q9P212 2302 aa10.05□□□□□ -0.8
USP4-204ENST00000416417 SH3PXD2BA1X283 911 aa10.05□□□□□ -0.8
USP4-204ENST00000416417 VWC2LB2RUY7 222 aa10.05□□□□□ -0.8
USP4-204ENST00000416417 M0R082 166 aa10.05□□□□□ -0.8
USP4-204ENST00000416417 CLIC1O00299 241 aa10.05□□□□□ -0.8
USP4-204ENST00000416417 TPST1O60507 370 aa10.05□□□□□ -0.8
USP4-204ENST00000416417 CRYAAP02489 173 aa10.05□□□□□ -0.8
USP4-204ENST00000416417 IGFBP5P24593 272 aa10.05□□□□□ -0.8
USP4-204ENST00000416417 NR4A2P43354 598 aa10.05□□□□□ -0.8
USP4-204ENST00000416417 SNRPD2P62316 118 aaKnown RBP10.05□□□□□ -0.8
USP4-204ENST00000416417 HGFACQ04756 655 aa10.05□□□□□ -0.8
USP4-204ENST00000416417 PHYHD1Q5SRE7 291 aa10.05□□□□□ -0.8
USP4-204ENST00000416417 ABHD12BQ7Z5M8 362 aaPredicted RBP10.05□□□□□ -0.8
USP4-204ENST00000416417 MSRB3Q8IXL7 192 aa10.05□□□□□ -0.8
USP4-204ENST00000416417 MIER2Q8N344 545 aa10.05□□□□□ -0.8
USP4-204ENST00000416417 MFSD8Q8NHS3 518 aa10.05□□□□□ -0.8
USP4-204ENST00000416417 ZNF417Q8TAU3 575 aa10.05□□□□□ -0.8
USP4-204ENST00000416417 RNF217Q8TC41 542 aa10.05□□□□□ -0.8
USP4-204ENST00000416417 STK35Q8TDR2 534 aa10.05□□□□□ -0.8
USP4-204ENST00000416417 PROX1Q92786 737 aa10.05□□□□□ -0.8
USP4-204ENST00000416417 MSI2Q96DH6 328 aaKnown RBP10.05□□□□□ -0.8
USP4-204ENST00000416417 ZNF587Q96SQ5 575 aaPredicted RBP10.05□□□□□ -0.8
USP4-204ENST00000416417 WFDC6Q9BQY6 131 aa10.05□□□□□ -0.8
USP4-204ENST00000416417 CACYBPQ9HB71 228 aaKnown RBP10.05□□□□□ -0.8
USP4-204ENST00000416417 GPR35Q9HC97 309 aa10.05□□□□□ -0.8
USP4-204ENST00000416417 A4GALTQ9NPC4 353 aa10.05□□□□□ -0.8
USP4-204ENST00000416417 SLC25A37Q9NYZ2 338 aa10.05□□□□□ -0.8
USP4-204ENST00000416417 B3GAT1Q9P2W7 334 aa10.05□□□□□ -0.8
USP4-204ENST00000416417 RPS6KB2Q9UBS0 482 aa10.05□□□□□ -0.8
USP4-204ENST00000416417 CDC42EP3Q9UKI2 254 aa10.05□□□□□ -0.8
USP4-204ENST00000416417 IGKV1D-42A0A075B6H8 117 aa10.04□□□□□ -0.8
USP4-204ENST00000416417 LOC100289279A0A1B0GTE1 492 aa10.04□□□□□ -0.8
USP4-204ENST00000416417 A0A1B0GWA3 101 aa10.04□□□□□ -0.8
USP4-204ENST00000416417 TMEM247A6NEH6 219 aa10.04□□□□□ -0.8
USP4-204ENST00000416417 SLCO1B7G3V0H7 640 aa10.04□□□□□ -0.8
USP4-204ENST00000416417 LMX1BO60663 402 aa10.04□□□□□ -0.8
USP4-204ENST00000416417 ZNF432O94892 652 aa10.04□□□□□ -0.8
USP4-204ENST00000416417 BMP4P12644 408 aa10.04□□□□□ -0.8
USP4-204ENST00000416417 HLA-DOBP13765 273 aa10.04□□□□□ -0.8
USP4-204ENST00000416417 ZNF43P17038 809 aa10.04□□□□□ -0.8
USP4-204ENST00000416417 HOXB9P17482 250 aaPredicted RBP10.04□□□□□ -0.8
USP4-204ENST00000416417 GTF2E2P29084 291 aaKnown RBP10.04□□□□□ -0.8
USP4-204ENST00000416417 GRPRP30550 384 aa10.04□□□□□ -0.8
USP4-204ENST00000416417 THBS4P35443 961 aa10.04□□□□□ -0.8
USP4-204ENST00000416417 IDH3GP51553 393 aaPredicted RBP10.04□□□□□ -0.8
USP4-204ENST00000416417 NPRL3Q12980 569 aa10.04□□□□□ -0.8
USP4-204ENST00000416417 CEACAM16Q2WEN9 425 aa10.04□□□□□ -0.8
USP4-204ENST00000416417 KRTAP24-1Q3LI83 254 aa10.04□□□□□ -0.8
USP4-204ENST00000416417 IQCCQ4KMZ1 466 aa10.04□□□□□ -0.8
USP4-204ENST00000416417 SVOPLQ8N434 492 aa10.04□□□□□ -0.8
USP4-204ENST00000416417 TMEM158Q8WZ71 300 aa10.04□□□□□ -0.8
USP4-204ENST00000416417 PIMREGQ9BSJ6 248 aa10.04□□□□□ -0.8
USP4-204ENST00000416417 EMC6Q9BV81 110 aa10.04□□□□□ -0.8
USP4-204ENST00000416417 KATNB1Q9BVA0 655 aa10.04□□□□□ -0.8
USP4-204ENST00000416417 SHARPINQ9H0F6 387 aa10.04□□□□□ -0.8
USP4-204ENST00000416417 NKIRAS1Q9NYS0 192 aa10.04□□□□□ -0.8
USP4-204ENST00000416417 IFT52Q9Y366 437 aa10.04□□□□□ -0.8
USP4-204ENST00000416417 FKBP7Q9Y680 259 aa10.04□□□□□ -0.8
USP4-204ENST00000416417 USH1CQ9Y6N9 552 aa10.04□□□□□ -0.8
USP4-204ENST00000416417 HEATR1Q9H583 2144 aaKnown RBP10.04□□□□□ -0.8
USP4-204ENST00000416417 YLPM1P49750 1951 aaKnown RBP10.03□□□□□ -0.8
USP4-204ENST00000416417 ARPC4-TTLL3A0A0A6YYG9 625 aa10.03□□□□□ -0.8
USP4-204ENST00000416417 LRP5LA4QPB2 252 aa10.03□□□□□ -0.8
USP4-204ENST00000416417 C5orf58C9J3I9 102 aa10.03□□□□□ -0.8
USP4-204ENST00000416417 LRRN3E7EW58 273 aa10.03□□□□□ -0.8
USP4-204ENST00000416417 LYNX1G3V0Z9 82 aa10.03□□□□□ -0.8
USP4-204ENST00000416417 M0R3G1 203 aa10.03□□□□□ -0.8
USP4-204ENST00000416417 SLC43A1O75387 559 aa10.03□□□□□ -0.8
USP4-204ENST00000416417 VAMP5O95183 116 aa10.03□□□□□ -0.8
USP4-204ENST00000416417 HPRP00739 348 aa10.03□□□□□ -0.8
USP4-204ENST00000416417 IGLV1-44P01699 117 aa10.03□□□□□ -0.8
USP4-204ENST00000416417 CSF3P09919 207 aa10.03□□□□□ -0.8
USP4-204ENST00000416417 LYNX1P0DP58 116 aa10.03□□□□□ -0.8
USP4-204ENST00000416417 APEHP13798 732 aaKnown RBP10.03□□□□□ -0.8
USP4-204ENST00000416417 AQP1P29972 269 aa10.03□□□□□ -0.8
USP4-204ENST00000416417 CAPZA2P47755 286 aa10.03□□□□□ -0.8
USP4-204ENST00000416417 AQP5P55064 265 aa10.03□□□□□ -0.8
USP4-204ENST00000416417 C1DQ13901 141 aaKnown RBP10.03□□□□□ -0.8
USP4-204ENST00000416417 PAGE3Q5JUK9 113 aa10.03□□□□□ -0.8
USP4-204ENST00000416417 MSANTD1Q6ZTZ1 278 aa10.03□□□□□ -0.8
USP4-204ENST00000416417 MDP1Q86V88 176 aa10.03□□□□□ -0.8
USP4-204ENST00000416417 FUNDC1Q8IVP5 155 aa10.03□□□□□ -0.8
USP4-204ENST00000416417 GPR137CQ8N3F9 429 aa10.03□□□□□ -0.8
USP4-204ENST00000416417 BBS10Q8TAM1 723 aa10.03□□□□□ -0.8
USP4-204ENST00000416417 BOD1Q96IK1 185 aa10.03□□□□□ -0.8
USP4-204ENST00000416417 OXGR1Q96P68 337 aa10.03□□□□□ -0.8
USP4-204ENST00000416417 OR2M2Q96R28 347 aa10.03□□□□□ -0.8
USP4-204ENST00000416417 EBF4Q9BQW3 602 aa10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms