RNA–Protein interactions for RNA: ENST00000412061.3

BRCA1-204, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,312 nt, Biotype non stop decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-204ENST00000412061 RBKSQ9H477 322 aa3.71□□□□□ -1.81
BRCA1-204ENST00000412061 PIGUQ9H490 435 aa3.71□□□□□ -1.81
BRCA1-204ENST00000412061 SDF2L1Q9HCN8 221 aa3.71□□□□□ -1.81
BRCA1-204ENST00000412061 DMAP1Q9NPF5 467 aaPredicted RBP3.71□□□□□ -1.81
BRCA1-204ENST00000412061 DEPPQ9NTK1 212 aa3.71□□□□□ -1.81
BRCA1-204ENST00000412061 PAK1IP1Q9NWT1 392 aaPredicted RBP3.71□□□□□ -1.81
BRCA1-204ENST00000412061 THYN1Q9P016 225 aa3.71□□□□□ -1.81
BRCA1-204ENST00000412061 SLC22A14Q9Y267 594 aa3.71□□□□□ -1.81
BRCA1-204ENST00000412061 SLC17A4Q9Y2C5 497 aa3.71□□□□□ -1.81
BRCA1-204ENST00000412061 CSNK1G3Q9Y6M4 447 aa3.71□□□□□ -1.81
BRCA1-204ENST00000412061 USP6P35125 1406 aa3.71□□□□□ -1.82
BRCA1-204ENST00000412061 MYH15Q9Y2K3 1946 aa3.71□□□□□ -1.82
BRCA1-204ENST00000412061 IGHV4-4A0A075B6R2 117 aa3.7□□□□□ -1.82
BRCA1-204ENST00000412061 IGHV3-20A0A0C4DH32 117 aa3.7□□□□□ -1.82
BRCA1-204ENST00000412061 OR5B21A6NL26 309 aa3.7□□□□□ -1.82
BRCA1-204ENST00000412061 C15orf61A6NNL5 157 aa3.7□□□□□ -1.82
BRCA1-204ENST00000412061 GFYI3L273 518 aa3.7□□□□□ -1.82
BRCA1-204ENST00000412061 RFXANKO14593 260 aa3.7□□□□□ -1.82
BRCA1-204ENST00000412061 GPAA1O43292 621 aa3.7□□□□□ -1.82
BRCA1-204ENST00000412061 GMDSO60547 372 aa3.7□□□□□ -1.82
BRCA1-204ENST00000412061 ENTPD5O75356 428 aa3.7□□□□□ -1.82
BRCA1-204ENST00000412061 FRAT2O75474 233 aaPredicted RBP3.7□□□□□ -1.82
BRCA1-204ENST00000412061 KLHL2O95198 593 aa3.7□□□□□ -1.82
BRCA1-204ENST00000412061 FARS2O95363 451 aaKnown RBP3.7□□□□□ -1.82
BRCA1-204ENST00000412061 CD160O95971 181 aa3.7□□□□□ -1.82
BRCA1-204ENST00000412061 GLAP06280 429 aa3.7□□□□□ -1.82
BRCA1-204ENST00000412061 MGMTP16455 207 aa3.7□□□□□ -1.82
BRCA1-204ENST00000412061 FASP25445 335 aa3.7□□□□□ -1.82
BRCA1-204ENST00000412061 CHRNB4P30926 498 aa3.7□□□□□ -1.82
BRCA1-204ENST00000412061 CRATP43155 626 aa3.7□□□□□ -1.82
BRCA1-204ENST00000412061 GPR1P46091 355 aa3.7□□□□□ -1.82
BRCA1-204ENST00000412061 KCNJ3P48549 501 aa3.7□□□□□ -1.82
BRCA1-204ENST00000412061 MFAP2P55001 183 aa3.7□□□□□ -1.82
BRCA1-204ENST00000412061 RND3P61587 244 aa3.7□□□□□ -1.82
BRCA1-204ENST00000412061 VLDLRP98155 873 aa3.7□□□□□ -1.82
BRCA1-204ENST00000412061 OR5I1Q13606 314 aa3.7□□□□□ -1.82
BRCA1-204ENST00000412061 KIAA0141Q14154 515 aaPredicted RBP3.7□□□□□ -1.82
BRCA1-204ENST00000412061 DPYSL3Q14195 570 aa3.7□□□□□ -1.82
BRCA1-204ENST00000412061 DGUOKQ16854 277 aa3.7□□□□□ -1.82
BRCA1-204ENST00000412061 CARD16Q5EG05 197 aa3.7□□□□□ -1.82
BRCA1-204ENST00000412061 MS4A13Q5J8X5 152 aa3.7□□□□□ -1.82
BRCA1-204ENST00000412061 BHLHA9Q7RTU4 235 aa3.7□□□□□ -1.82
BRCA1-204ENST00000412061 CYP4Z1Q86W10 505 aa3.7□□□□□ -1.82
BRCA1-204ENST00000412061 APLFQ8IW19 511 aaPredicted RBP3.7□□□□□ -1.82
BRCA1-204ENST00000412061 NELFCDQ8IXH7 590 aa3.7□□□□□ -1.82
BRCA1-204ENST00000412061 LSMEM2Q8N112 164 aa3.7□□□□□ -1.82
BRCA1-204ENST00000412061 TRAM1L1Q8N609 369 aa3.7□□□□□ -1.82
BRCA1-204ENST00000412061 PRSS33Q8NF86 280 aa3.7□□□□□ -1.82
BRCA1-204ENST00000412061 OR56A4Q8NGH8 313 aa3.7□□□□□ -1.82
BRCA1-204ENST00000412061 OR1S2Q8NGQ3 325 aa3.7□□□□□ -1.82
BRCA1-204ENST00000412061 ZPLD1Q8TCW7 415 aa3.7□□□□□ -1.82
BRCA1-204ENST00000412061 HTR3CQ8WXA8 447 aa3.7□□□□□ -1.82
BRCA1-204ENST00000412061 ISOC2Q96AB3 205 aa3.7□□□□□ -1.82
BRCA1-204ENST00000412061 APH1AQ96BI3 265 aa3.7□□□□□ -1.82
BRCA1-204ENST00000412061 WBP1Q96G27 269 aa3.7□□□□□ -1.82
BRCA1-204ENST00000412061 MS4A14Q96JA4 679 aa3.7□□□□□ -1.82
BRCA1-204ENST00000412061 ACTR3CQ9C0K3 210 aaPredicted RBP3.7□□□□□ -1.82
BRCA1-204ENST00000412061 HDHD2Q9H0R4 259 aa3.7□□□□□ -1.82
BRCA1-204ENST00000412061 WDR13Q9H1Z4 485 aa3.7□□□□□ -1.82
BRCA1-204ENST00000412061 LY9Q9HBG7 655 aa3.7□□□□□ -1.82
BRCA1-204ENST00000412061 RETNQ9HD89 108 aa3.7□□□□□ -1.82
BRCA1-204ENST00000412061 B3GAT2Q9NPZ5 323 aa3.7□□□□□ -1.82
BRCA1-204ENST00000412061 ZNF71Q9NQZ8 489 aaPredicted RBP3.7□□□□□ -1.82
BRCA1-204ENST00000412061 SAMSN1Q9NSI8 373 aaKnown RBP3.7□□□□□ -1.82
BRCA1-204ENST00000412061 QPCTLQ9NXS2 382 aa3.7□□□□□ -1.82
BRCA1-204ENST00000412061 EHFQ9NZC4 300 aa3.7□□□□□ -1.82
BRCA1-204ENST00000412061 UXTQ9UBK9 157 aaPredicted RBP3.7□□□□□ -1.82
BRCA1-204ENST00000412061 MTRF1LQ9UGC7 380 aaKnown RBP3.7□□□□□ -1.82
BRCA1-204ENST00000412061 SLC2A6Q9UGQ3 507 aa3.7□□□□□ -1.82
BRCA1-204ENST00000412061 LSM7Q9UK45 103 aaKnown RBP3.7□□□□□ -1.82
BRCA1-204ENST00000412061 PPP1R3CQ9UQK1 317 aa3.7□□□□□ -1.82
BRCA1-204ENST00000412061 UBN2Q6ZU65 1347 aa3.7□□□□□ -1.82
BRCA1-204ENST00000412061 A0A1B0GW15 77 aa3.7□□□□□ -1.82
BRCA1-204ENST00000412061 IFITM10A6NMD0 228 aa3.7□□□□□ -1.82
BRCA1-204ENST00000412061 G3V2L1 256 aa3.7□□□□□ -1.82
BRCA1-204ENST00000412061 SULT2B1O00204 365 aa3.7□□□□□ -1.82
BRCA1-204ENST00000412061 EIF4E2O60573 245 aaKnown RBP3.7□□□□□ -1.82
BRCA1-204ENST00000412061 SLC19A2O60779 497 aa3.7□□□□□ -1.82
BRCA1-204ENST00000412061 CRTAPO75718 401 aaPredicted RBP3.7□□□□□ -1.82
BRCA1-204ENST00000412061 ERLIN2O94905 339 aa3.7□□□□□ -1.82
BRCA1-204ENST00000412061 LGALS2P05162 132 aa3.7□□□□□ -1.82
BRCA1-204ENST00000412061 KRT16P08779 473 aa3.7□□□□□ -1.82
BRCA1-204ENST00000412061 HOXD4P09016 255 aaPredicted RBP3.7□□□□□ -1.82
BRCA1-204ENST00000412061 CD48P09326 243 aa3.7□□□□□ -1.82
BRCA1-204ENST00000412061 BCL3P20749 454 aa3.7□□□□□ -1.82
BRCA1-204ENST00000412061 PDHA2P29803 388 aa3.7□□□□□ -1.82
BRCA1-204ENST00000412061 MAP2K2P36507 400 aa3.7□□□□□ -1.82
BRCA1-204ENST00000412061 DDOSTP39656 456 aa3.7□□□□□ -1.82
BRCA1-204ENST00000412061 SLC26A3P40879 764 aa3.7□□□□□ -1.82
BRCA1-204ENST00000412061 ELK3P41970 407 aa3.7□□□□□ -1.82
BRCA1-204ENST00000412061 GSSP48637 474 aa3.7□□□□□ -1.82
BRCA1-204ENST00000412061 CRISP1P54107 249 aa3.7□□□□□ -1.82
BRCA1-204ENST00000412061 RPS15AP62244 130 aaKnown RBP3.7□□□□□ -1.82
BRCA1-204ENST00000412061 UBE2IP63279 158 aaKnown RBP3.7□□□□□ -1.82
BRCA1-204ENST00000412061 GNMTQ14749 295 aa3.7□□□□□ -1.82
BRCA1-204ENST00000412061 NCF4Q15080 339 aa3.7□□□□□ -1.82
BRCA1-204ENST00000412061 TSC22D1Q15714 1073 aa3.7□□□□□ -1.82
BRCA1-204ENST00000412061 MUC21Q5SSG8 566 aa3.7□□□□□ -1.82
BRCA1-204ENST00000412061 LINC00242Q5T6M2 205 aa3.7□□□□□ -1.82
BRCA1-204ENST00000412061 LCE1AQ5T7P2 110 aa3.7□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms