RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 PELOQ9BRX2 385 aaKnown RBP8.85□□□□□ -0.99
COL6A3-204ENST00000392003 LRRC61Q9BV99 259 aa8.85□□□□□ -0.99
COL6A3-204ENST00000392003 PLCL2Q9UPR0 1127 aa8.85□□□□□ -0.99
COL6A3-204ENST00000392003 SMLR1H3BR10 107 aa8.84□□□□□ -0.99
COL6A3-204ENST00000392003 TO15178 435 aa8.84□□□□□ -0.99
COL6A3-204ENST00000392003 GATCO43716 136 aaKnown RBP8.84□□□□□ -0.99
COL6A3-204ENST00000392003 PLATP00750 562 aa8.84□□□□□ -0.99
COL6A3-204ENST00000392003 SHC1P29353 583 aa8.84□□□□□ -0.99
COL6A3-204ENST00000392003 ACVR1BP36896 505 aa8.84□□□□□ -0.99
COL6A3-204ENST00000392003 ACAA2P42765 397 aaKnown RBP8.84□□□□□ -0.99
COL6A3-204ENST00000392003 HOXA1P49639 335 aaPredicted RBP8.84□□□□□ -0.99
COL6A3-204ENST00000392003 CSNK1EP49674 416 aaKnown RBP8.84□□□□□ -0.99
COL6A3-204ENST00000392003 HNRNPKP61978 463 aaKnown RBP eCLIP8.84□□□□□ -0.99
COL6A3-204ENST00000392003 MAT1AQ00266 395 aaKnown RBP8.84□□□□□ -0.99
COL6A3-204ENST00000392003 PON3Q15166 354 aa8.84□□□□□ -0.99
COL6A3-204ENST00000392003 POU4F3Q15319 338 aa8.84□□□□□ -0.99
COL6A3-204ENST00000392003 ZNF141Q15928 474 aa8.84□□□□□ -0.99
COL6A3-204ENST00000392003 POC1BQ8TC44 478 aa8.84□□□□□ -0.99
COL6A3-204ENST00000392003 SNX33Q8WV41 574 aa8.84□□□□□ -0.99
COL6A3-204ENST00000392003 RNF32Q9H0A6 362 aa8.84□□□□□ -0.99
COL6A3-204ENST00000392003 IER3IP1Q9Y5U9 82 aa8.84□□□□□ -0.99
COL6A3-204ENST00000392003 METTL12A8MUP2 240 aa8.84□□□□□ -0.99
COL6A3-204ENST00000392003 B4DXG7 233 aa8.84□□□□□ -0.99
COL6A3-204ENST00000392003 RFPL3O75679 317 aa8.84□□□□□ -0.99
COL6A3-204ENST00000392003 NSA2O95478 260 aaKnown RBP8.84□□□□□ -0.99
COL6A3-204ENST00000392003 S1PR1P21453 382 aa8.84□□□□□ -0.99
COL6A3-204ENST00000392003 ACTA2P62736 377 aa8.84□□□□□ -0.99
COL6A3-204ENST00000392003 ACTG2P63267 376 aa8.84□□□□□ -0.99
COL6A3-204ENST00000392003 KIRREL2Q6UWL6 708 aa8.84□□□□□ -0.99
COL6A3-204ENST00000392003 RDH10Q8IZV5 341 aa8.84□□□□□ -0.99
COL6A3-204ENST00000392003 ARL14Q8N4G2 192 aa8.84□□□□□ -0.99
COL6A3-204ENST00000392003 SDR9C7Q8NEX9 313 aa8.84□□□□□ -0.99
COL6A3-204ENST00000392003 ABHD4Q8TB40 342 aa8.84□□□□□ -0.99
COL6A3-204ENST00000392003 HOXB13Q92826 284 aaPredicted RBP8.84□□□□□ -0.99
COL6A3-204ENST00000392003 KISS1RQ969F8 398 aaPredicted RBP8.84□□□□□ -0.99
COL6A3-204ENST00000392003 ZMYND19Q96E35 227 aaPredicted RBP8.84□□□□□ -0.99
COL6A3-204ENST00000392003 VSTM2LQ96N03 204 aa8.84□□□□□ -0.99
COL6A3-204ENST00000392003 LRFN5Q96NI6 719 aa8.84□□□□□ -0.99
COL6A3-204ENST00000392003 SPSB2Q99619 263 aa8.84□□□□□ -0.99
COL6A3-204ENST00000392003 WDR77Q9BQA1 342 aaPredicted RBP8.84□□□□□ -0.99
COL6A3-204ENST00000392003 PPP1R14DQ9NXH3 145 aa8.84□□□□□ -0.99
COL6A3-204ENST00000392003 HAO2Q9NYQ3 351 aa8.84□□□□□ -0.99
COL6A3-204ENST00000392003 SLCO1B1Q9Y6L6 691 aa8.84□□□□□ -0.99
COL6A3-204ENST00000392003 SZT2Q5T011 3432 aa8.84□□□□□ -0.99
COL6A3-204ENST00000392003 LOC105378220A0A1B0GUY1 285 aaPredicted RBP8.84□□□□□ -1
COL6A3-204ENST00000392003 SERINC4A6NH21 518 aa8.84□□□□□ -1
COL6A3-204ENST00000392003 LYRM1O43325 122 aa8.84□□□□□ -1
COL6A3-204ENST00000392003 PLPP2O43688 288 aa8.84□□□□□ -1
COL6A3-204ENST00000392003 IGKV1D-16P01601 117 aa8.84□□□□□ -1
COL6A3-204ENST00000392003 CLUP10909 449 aa8.84□□□□□ -1
COL6A3-204ENST00000392003 IL9P15248 144 aa8.84□□□□□ -1
COL6A3-204ENST00000392003 DDOSTP39656 456 aa8.84□□□□□ -1
COL6A3-204ENST00000392003 CCR4P51679 360 aa8.84□□□□□ -1
COL6A3-204ENST00000392003 OR12D2P58182 307 aa8.84□□□□□ -1
COL6A3-204ENST00000392003 SERTAD2Q14140 314 aa8.84□□□□□ -1
COL6A3-204ENST00000392003 FAM53BQ14153 422 aa8.84□□□□□ -1
COL6A3-204ENST00000392003 SF3A2Q15428 464 aaKnown RBP8.84□□□□□ -1
COL6A3-204ENST00000392003 LRRC28Q86X40 367 aaPredicted RBP8.84□□□□□ -1
COL6A3-204ENST00000392003 METTL27Q8N6F8 245 aaPredicted RBP8.84□□□□□ -1
COL6A3-204ENST00000392003 POMGNT2Q8NAT1 580 aa8.84□□□□□ -1
COL6A3-204ENST00000392003 NLGN4YQ8NFZ3 816 aaPredicted RBP8.84□□□□□ -1
COL6A3-204ENST00000392003 OR5M3Q8NGP4 307 aa8.84□□□□□ -1
COL6A3-204ENST00000392003 CNN2Q99439 309 aaKnown RBP8.84□□□□□ -1
COL6A3-204ENST00000392003 OR10A5Q9H207 317 aa8.84□□□□□ -1
COL6A3-204ENST00000392003 PPP1R3EQ9H7J1 279 aa8.84□□□□□ -1
COL6A3-204ENST00000392003 ADGRL4Q9HBW9 690 aa8.84□□□□□ -1
COL6A3-204ENST00000392003 ENAMQ9NRM1 1142 aa8.84□□□□□ -1
COL6A3-204ENST00000392003 FAM212BQ9NTI7 297 aaPredicted RBP8.84□□□□□ -1
COL6A3-204ENST00000392003 RBFOX1Q9NWB1 397 aaKnown RBP8.84□□□□□ -1
COL6A3-204ENST00000392003 SIRT4Q9Y6E7 314 aaPredicted RBP8.84□□□□□ -1
COL6A3-204ENST00000392003 SEC16AO15027 2179 aa8.83□□□□□ -1
COL6A3-204ENST00000392003 SPAG17Q6Q759 2223 aa8.83□□□□□ -1
COL6A3-204ENST00000392003 ELOA3DA6NLF2 546 aaPredicted RBP8.83□□□□□ -1
COL6A3-204ENST00000392003 SEC14L5O43304 696 aa8.83□□□□□ -1
COL6A3-204ENST00000392003 EIF1BO60739 113 aaKnown RBP8.83□□□□□ -1
COL6A3-204ENST00000392003 SNAPINO95295 136 aa8.83□□□□□ -1
COL6A3-204ENST00000392003 CTSBP07858 339 aa8.83□□□□□ -1
COL6A3-204ENST00000392003 NDUFB7P17568 137 aa8.83□□□□□ -1
COL6A3-204ENST00000392003 EIF1P41567 113 aaKnown RBP8.83□□□□□ -1
COL6A3-204ENST00000392003 GRK6P43250 576 aa8.83□□□□□ -1
COL6A3-204ENST00000392003 NRG3P56975 720 aa8.83□□□□□ -1
COL6A3-204ENST00000392003 BTG2P78543 158 aa8.83□□□□□ -1
COL6A3-204ENST00000392003 P2RY14Q15391 338 aa8.83□□□□□ -1
COL6A3-204ENST00000392003 BTBD16Q32M84 506 aa8.83□□□□□ -1
COL6A3-204ENST00000392003 ELOA3BQ3SY89 546 aa8.83□□□□□ -1
COL6A3-204ENST00000392003 ACSM3Q53FZ2 586 aa8.83□□□□□ -1
COL6A3-204ENST00000392003 TCTE1Q5JU00 501 aa8.83□□□□□ -1
COL6A3-204ENST00000392003 SAMD12Q8N8I0 201 aa8.83□□□□□ -1
COL6A3-204ENST00000392003 ELOA3Q8NG57 546 aa8.83□□□□□ -1
COL6A3-204ENST00000392003 MARVELD3Q96A59 401 aa8.83□□□□□ -1
COL6A3-204ENST00000392003 UCK1Q9HA47 277 aa8.83□□□□□ -1
COL6A3-204ENST00000392003 PDE7BQ9NP56 450 aa8.83□□□□□ -1
COL6A3-204ENST00000392003 SPTBP11277 2137 aa8.83□□□□□ -1
COL6A3-204ENST00000392003 TMEM265A0A087WTH1 108 aa8.83□□□□□ -1
COL6A3-204ENST00000392003 SHISA3A0PJX4 238 aa8.83□□□□□ -1
COL6A3-204ENST00000392003 PLA2G10O15496 165 aa8.83□□□□□ -1
COL6A3-204ENST00000392003 ZNF749O43361 778 aa8.83□□□□□ -1
COL6A3-204ENST00000392003 FOXS1O43638 330 aa8.83□□□□□ -1
COL6A3-204ENST00000392003 ARL6IP5O75915 188 aa8.83□□□□□ -1
COL6A3-204ENST00000392003 IGLV3-19P01714 112 aa8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms