RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 TGP01266 2768 aa11.93□□□□□ -0.5
VPS29-201ENST00000360579 A0A096LPI6 279 aa11.93□□□□□ -0.5
VPS29-201ENST00000360579 PRSS51A0A1B0GVH4 220 aa11.93□□□□□ -0.5
VPS29-201ENST00000360579 RGS9O75916 674 aaPredicted RBP11.93□□□□□ -0.5
VPS29-201ENST00000360579 CELA3BP08861 270 aa11.93□□□□□ -0.5
VPS29-201ENST00000360579 GAAP10253 952 aa11.93□□□□□ -0.5
VPS29-201ENST00000360579 ANXA11P50995 505 aaKnown RBP11.93□□□□□ -0.5
VPS29-201ENST00000360579 P2RY4P51582 365 aa11.93□□□□□ -0.5
VPS29-201ENST00000360579 COPZ1P61923 177 aa11.93□□□□□ -0.5
VPS29-201ENST00000360579 MRPS11P82912 194 aaKnown RBP11.93□□□□□ -0.5
VPS29-201ENST00000360579 ARF1P84077 181 aaKnown RBP11.93□□□□□ -0.5
VPS29-201ENST00000360579 NPRL3Q12980 569 aa11.93□□□□□ -0.5
VPS29-201ENST00000360579 SMU1Q2TAY7 513 aa11.93□□□□□ -0.5
VPS29-201ENST00000360579 AWAT1Q58HT5 328 aa11.93□□□□□ -0.5
VPS29-201ENST00000360579 ELFN2Q5R3F8 820 aa11.93□□□□□ -0.5
VPS29-201ENST00000360579 LINGO2Q7L985 606 aa11.93□□□□□ -0.5
VPS29-201ENST00000360579 MYPOPQ86VE0 399 aaPredicted RBP11.93□□□□□ -0.5
VPS29-201ENST00000360579 EPHX4Q8IUS5 362 aa11.93□□□□□ -0.5
VPS29-201ENST00000360579 C4orf33Q8N1A6 199 aa11.93□□□□□ -0.5
VPS29-201ENST00000360579 MRPL24Q96A35 216 aaKnown RBP11.93□□□□□ -0.5
VPS29-201ENST00000360579 TXLNGYQ9BZA5 131 aa11.93□□□□□ -0.5
VPS29-201ENST00000360579 MTHFD2LQ9H903 347 aaPredicted RBP11.93□□□□□ -0.5
VPS29-201ENST00000360579 CRLF2Q9HC73 371 aa11.93□□□□□ -0.5
VPS29-201ENST00000360579 MARCOQ9UEW3 520 aaPredicted RBP11.93□□□□□ -0.5
VPS29-201ENST00000360579 RCE1Q9Y256 329 aa11.93□□□□□ -0.5
VPS29-201ENST00000360579 TMEM229AB2RXF0 380 aa11.92□□□□□ -0.5
VPS29-201ENST00000360579 HMGN4O00479 90 aa11.92□□□□□ -0.5
VPS29-201ENST00000360579 FRS3O43559 492 aa11.92□□□□□ -0.5
VPS29-201ENST00000360579 SLC43A1O75387 559 aa11.92□□□□□ -0.5
VPS29-201ENST00000360579 CPSF4O95639 269 aaKnown RBP11.92□□□□□ -0.5
VPS29-201ENST00000360579 DBIP07108 87 aaKnown RBP11.92□□□□□ -0.5
VPS29-201ENST00000360579 CHRM4P08173 479 aa11.92□□□□□ -0.5
VPS29-201ENST00000360579 NR4A1P22736 598 aa11.92□□□□□ -0.5
VPS29-201ENST00000360579 ALDH3A1P30838 453 aa11.92□□□□□ -0.5
VPS29-201ENST00000360579 CAPZA2P47755 286 aa11.92□□□□□ -0.5
VPS29-201ENST00000360579 MRPL2Q5T653 305 aaKnown RBP11.92□□□□□ -0.5
VPS29-201ENST00000360579 C1orf140Q5VVS0 124 aa11.92□□□□□ -0.5
VPS29-201ENST00000360579 WBP2NLQ6ICG8 309 aa11.92□□□□□ -0.5
VPS29-201ENST00000360579 KRT80Q6KB66 452 aa11.92□□□□□ -0.5
VPS29-201ENST00000360579 SHISA2Q6UWI4 295 aa11.92□□□□□ -0.5
VPS29-201ENST00000360579 LRRC74BQ6ZQY2 392 aa11.92□□□□□ -0.5
VPS29-201ENST00000360579 ZCCHC23Q6ZST2 131 aa11.92□□□□□ -0.5
VPS29-201ENST00000360579 ANKRD46Q86W74 232 aa11.92□□□□□ -0.5
VPS29-201ENST00000360579 ZIM3Q96PE6 472 aa11.92□□□□□ -0.5
VPS29-201ENST00000360579 ZNF416Q9BWM5 594 aa11.92□□□□□ -0.5
VPS29-201ENST00000360579 SLC38A1Q9H2H9 487 aa11.92□□□□□ -0.5
VPS29-201ENST00000360579 NARFLQ9H6Q4 476 aa11.92□□□□□ -0.5
VPS29-201ENST00000360579 SLC52A3Q9NQ40 469 aa11.92□□□□□ -0.5
VPS29-201ENST00000360579 PRAMEF27A3QJZ7 478 aa11.91□□□□□ -0.5
VPS29-201ENST00000360579 BCL10O95999 233 aa11.91□□□□□ -0.5
VPS29-201ENST00000360579 HPXP02790 462 aa11.91□□□□□ -0.5
VPS29-201ENST00000360579 GSNP06396 782 aa11.91□□□□□ -0.5
VPS29-201ENST00000360579 TFPTP0C1Z6 253 aa11.91□□□□□ -0.5
VPS29-201ENST00000360579 ZNF43P17038 809 aa11.91□□□□□ -0.5
VPS29-201ENST00000360579 RPS4Y1P22090 263 aaKnown RBP11.91□□□□□ -0.5
VPS29-201ENST00000360579 RPS23P62266 143 aaKnown RBP11.91□□□□□ -0.5
VPS29-201ENST00000360579 MYBPC1Q00872 1141 aa11.91□□□□□ -0.5
VPS29-201ENST00000360579 DPY19L1Q2PZI1 675 aa11.91□□□□□ -0.5
VPS29-201ENST00000360579 PDLIM3Q53GG5 364 aaPredicted RBP11.91□□□□□ -0.5
VPS29-201ENST00000360579 ZNF311Q5JNZ3 666 aa11.91□□□□□ -0.5
VPS29-201ENST00000360579 BLOC1S3Q6QNY0 202 aa11.91□□□□□ -0.5
VPS29-201ENST00000360579 MDP1Q86V88 176 aa11.91□□□□□ -0.5
VPS29-201ENST00000360579 PEX5LQ8IYB4 626 aa11.91□□□□□ -0.5
VPS29-201ENST00000360579 GPR137CQ8N3F9 429 aa11.91□□□□□ -0.5
VPS29-201ENST00000360579 ANKFN1Q8N957 763 aa11.91□□□□□ -0.5
VPS29-201ENST00000360579 SLC35A5Q9BS91 424 aa11.91□□□□□ -0.5
VPS29-201ENST00000360579 ZNF747Q9BV97 191 aa11.91□□□□□ -0.5
VPS29-201ENST00000360579 MRPL37Q9BZE1 423 aaKnown RBP11.91□□□□□ -0.5
VPS29-201ENST00000360579 MKS1Q9NXB0 559 aa11.91□□□□□ -0.5
VPS29-201ENST00000360579 TREM2Q9NZC2 230 aa11.91□□□□□ -0.5
VPS29-201ENST00000360579 NOX1Q9Y5S8 564 aa11.91□□□□□ -0.5
VPS29-201ENST00000360579 A0A0G2JMP0 313 aa11.9□□□□□ -0.5
VPS29-201ENST00000360579 A0A0X1KG70 313 aa11.9□□□□□ -0.5
VPS29-201ENST00000360579 SMIM23A6NLE4 172 aa11.9□□□□□ -0.5
VPS29-201ENST00000360579 TMPRSS2O15393 492 aa11.9□□□□□ -0.5
VPS29-201ENST00000360579 PPIHO43447 177 aaKnown RBP11.9□□□□□ -0.5
VPS29-201ENST00000360579 AKAP8O43823 692 aaKnown RBP11.9□□□□□ -0.5
VPS29-201ENST00000360579 ZNF432O94892 652 aa11.9□□□□□ -0.5
VPS29-201ENST00000360579 AHSA1O95433 338 aa11.9□□□□□ -0.5
VPS29-201ENST00000360579 FAM153BP0C7A2 387 aa11.9□□□□□ -0.5
VPS29-201ENST00000360579 COL8A2P25067 703 aa11.9□□□□□ -0.5
VPS29-201ENST00000360579 GTF2E2P29084 291 aaKnown RBP11.9□□□□□ -0.5
VPS29-201ENST00000360579 GLRXP35754 106 aa11.9□□□□□ -0.5
VPS29-201ENST00000360579 CLDN17P56750 224 aa11.9□□□□□ -0.5
VPS29-201ENST00000360579 LMO4P61968 165 aa11.9□□□□□ -0.5
VPS29-201ENST00000360579 FOXL1Q12952 345 aa11.9□□□□□ -0.5
VPS29-201ENST00000360579 SYPL1Q16563 259 aa11.9□□□□□ -0.5
VPS29-201ENST00000360579 TRMT5Q32P41 509 aaKnown RBP11.9□□□□□ -0.5
VPS29-201ENST00000360579 CADM2Q8N3J6 435 aa11.9□□□□□ -0.5
VPS29-201ENST00000360579 RIBC1Q8N443 379 aaPredicted RBP11.9□□□□□ -0.5
VPS29-201ENST00000360579 BPIFB2Q8N4F0 458 aa11.9□□□□□ -0.5
VPS29-201ENST00000360579 TRIML2Q8N7C3 387 aa11.9□□□□□ -0.5
VPS29-201ENST00000360579 PIK3C3Q8NEB9 887 aa11.9□□□□□ -0.5
VPS29-201ENST00000360579 OR4M2Q8NGB6 313 aa11.9□□□□□ -0.5
VPS29-201ENST00000360579 MFSD8Q8NHS3 518 aa11.9□□□□□ -0.5
VPS29-201ENST00000360579 STK35Q8TDR2 534 aa11.9□□□□□ -0.5
VPS29-201ENST00000360579 TESCQ96BS2 214 aa11.9□□□□□ -0.5
VPS29-201ENST00000360579 APOPT1Q96IL0 206 aa11.9□□□□□ -0.5
VPS29-201ENST00000360579 ZNF385DQ9H6B1 395 aa11.9□□□□□ -0.5
VPS29-201ENST00000360579 GPR35Q9HC97 309 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms