RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 SYT5O00445 386 aa18.13■□□□□ 0.49
CCDC88B-202ENST00000356786 TGM5O43548 720 aa18.13■□□□□ 0.49
CCDC88B-202ENST00000356786 PAPLNO95428 1278 aa18.13■□□□□ 0.49
CCDC88B-202ENST00000356786 PMS2P2O95744 297 aa18.13■□□□□ 0.49
CCDC88B-202ENST00000356786 C1SP09871 688 aa18.13■□□□□ 0.49
CCDC88B-202ENST00000356786 C5AR1P21730 350 aa18.13■□□□□ 0.49
CCDC88B-202ENST00000356786 HCCSP53701 268 aa18.13■□□□□ 0.49
CCDC88B-202ENST00000356786 FAM26EQ8N5C1 309 aa18.13■□□□□ 0.49
CCDC88B-202ENST00000356786 OR10Z1Q8NGY1 313 aa18.13■□□□□ 0.49
CCDC88B-202ENST00000356786 SLC25A21Q9BQT8 299 aaPredicted RBP18.13■□□□□ 0.49
CCDC88B-202ENST00000356786 GPR174Q9BXC1 333 aa18.13■□□□□ 0.49
CCDC88B-202ENST00000356786 GABARAPL3Q9BY60 117 aa18.13■□□□□ 0.49
CCDC88B-202ENST00000356786 GABARAPL1Q9H0R8 117 aa18.13■□□□□ 0.49
CCDC88B-202ENST00000356786 A4GALTQ9NPC4 353 aa18.13■□□□□ 0.49
CCDC88B-202ENST00000356786 VDAC3Q9Y277 283 aa18.13■□□□□ 0.49
CCDC88B-202ENST00000356786 A0A0A6YYJ9 748 aa18.13■□□□□ 0.49
CCDC88B-202ENST00000356786 CFIP05156 583 aa18.13■□□□□ 0.49
CCDC88B-202ENST00000356786 NUDT1P36639 197 aa18.13■□□□□ 0.49
CCDC88B-202ENST00000356786 RPL23AP62750 156 aaKnown RBP18.13■□□□□ 0.49
CCDC88B-202ENST00000356786 DGCR2P98153 550 aa18.13■□□□□ 0.49
CCDC88B-202ENST00000356786 ZNF852Q6ZMS4 543 aa18.13■□□□□ 0.49
CCDC88B-202ENST00000356786 USP53Q70EK8 1073 aa18.13■□□□□ 0.49
CCDC88B-202ENST00000356786 PRICKLE2Q7Z3G6 844 aa18.13■□□□□ 0.49
CCDC88B-202ENST00000356786 OR5L2Q8NGL0 311 aa18.13■□□□□ 0.49
CCDC88B-202ENST00000356786 PDCD1LG2Q9BQ51 273 aa18.13■□□□□ 0.49
CCDC88B-202ENST00000356786 RBM38Q9H0Z9 239 aaKnown RBP18.13■□□□□ 0.49
CCDC88B-202ENST00000356786 MUTYHQ9UIF7 546 aa18.13■□□□□ 0.49
CCDC88B-202ENST00000356786 ADAM29Q9UKF5 820 aa18.13■□□□□ 0.49
CCDC88B-202ENST00000356786 C17orf105B2RV13 164 aa18.12■□□□□ 0.49
CCDC88B-202ENST00000356786 D6RAR5 112 aa18.12■□□□□ 0.49
CCDC88B-202ENST00000356786 SFTPDP35247 375 aa18.12■□□□□ 0.49
CCDC88B-202ENST00000356786 NDUFA6P56556 154 aa18.12■□□□□ 0.49
CCDC88B-202ENST00000356786 OR4Q3Q8NH05 313 aa18.12■□□□□ 0.49
CCDC88B-202ENST00000356786 SELENOIQ9C0D9 397 aa18.12■□□□□ 0.49
CCDC88B-202ENST00000356786 R3HDMLQ9H3Y0 253 aa18.12■□□□□ 0.49
CCDC88B-202ENST00000356786 CD300LBA8K4G0 201 aa18.12■□□□□ 0.49
CCDC88B-202ENST00000356786 H7C1C5 153 aa18.12■□□□□ 0.49
CCDC88B-202ENST00000356786 YY2O15391 372 aa18.12■□□□□ 0.49
CCDC88B-202ENST00000356786 SULT1B1O43704 296 aa18.12■□□□□ 0.49
CCDC88B-202ENST00000356786 ATG12O94817 140 aa18.12■□□□□ 0.49
CCDC88B-202ENST00000356786 LCN6P62502 163 aa18.12■□□□□ 0.49
CCDC88B-202ENST00000356786 CAMK2DQ13557 499 aa18.12■□□□□ 0.49
CCDC88B-202ENST00000356786 TANGO2Q6ICL3 276 aa18.12■□□□□ 0.49
CCDC88B-202ENST00000356786 NLRC3Q7RTR2 1065 aa18.12■□□□□ 0.49
CCDC88B-202ENST00000356786 OR13C9Q8NGT0 318 aa18.12■□□□□ 0.49
CCDC88B-202ENST00000356786 RNF32Q9H0A6 362 aa18.12■□□□□ 0.49
CCDC88B-202ENST00000356786 OR52A5Q9H2C5 316 aa18.12■□□□□ 0.49
CCDC88B-202ENST00000356786 HHATLQ9HCP6 504 aa18.12■□□□□ 0.49
CCDC88B-202ENST00000356786 KCNIP1Q9NZI2 227 aa18.12■□□□□ 0.49
CCDC88B-202ENST00000356786 APOBEC3BQ9UH17 382 aaKnown RBP18.12■□□□□ 0.49
CCDC88B-202ENST00000356786 SEC14L5O43304 696 aa18.12■□□□□ 0.49
CCDC88B-202ENST00000356786 GPR75O95800 540 aa18.12■□□□□ 0.49
CCDC88B-202ENST00000356786 SBK3P0C264 359 aa18.12■□□□□ 0.49
CCDC88B-202ENST00000356786 ZNF28P17035 718 aa18.12■□□□□ 0.49
CCDC88B-202ENST00000356786 TGM1P22735 817 aa18.12■□□□□ 0.49
CCDC88B-202ENST00000356786 OMGP23515 440 aa18.12■□□□□ 0.49
CCDC88B-202ENST00000356786 EVX1P49640 407 aa18.12■□□□□ 0.49
CCDC88B-202ENST00000356786 EID2Q8N6I1 236 aa18.12■□□□□ 0.49
CCDC88B-202ENST00000356786 OR51S1Q8NGJ8 323 aa18.12■□□□□ 0.49
CCDC88B-202ENST00000356786 ASB17Q8WXJ9 295 aa18.12■□□□□ 0.49
CCDC88B-202ENST00000356786 SPTSSAQ969W0 71 aa18.12■□□□□ 0.49
CCDC88B-202ENST00000356786 SRMP19623 302 aa18.12■□□□□ 0.49
CCDC88B-202ENST00000356786 SERPINA2P20848 420 aa18.12■□□□□ 0.49
CCDC88B-202ENST00000356786 SMAD2Q15796 467 aaKnown RBP18.12■□□□□ 0.49
CCDC88B-202ENST00000356786 EXOSC6Q5RKV6 272 aaKnown RBP18.12■□□□□ 0.49
CCDC88B-202ENST00000356786 ZNF511Q8NB15 262 aa18.12■□□□□ 0.49
CCDC88B-202ENST00000356786 PHYHIPQ92561 330 aa18.12■□□□□ 0.49
CCDC88B-202ENST00000356786 PPP1R2P9O14990 202 aa18.11■□□□□ 0.49
CCDC88B-202ENST00000356786 HOXC13P31276 330 aa18.11■□□□□ 0.49
CCDC88B-202ENST00000356786 OR10K2Q6IF99 312 aa18.11■□□□□ 0.49
CCDC88B-202ENST00000356786 TMEM184AQ6ZMB5 413 aa18.11■□□□□ 0.49
CCDC88B-202ENST00000356786 TCEAL8Q8IYN2 117 aa18.11■□□□□ 0.49
CCDC88B-202ENST00000356786 OR52H1Q8NGJ2 320 aa18.11■□□□□ 0.49
CCDC88B-202ENST00000356786 OR2A12Q8NGT7 310 aa18.11■□□□□ 0.49
CCDC88B-202ENST00000356786 OR52I2Q8NH67 350 aa18.11■□□□□ 0.49
CCDC88B-202ENST00000356786 OLIG1Q8TAK6 271 aa18.11■□□□□ 0.49
CCDC88B-202ENST00000356786 GLIPR2Q9H4G4 154 aa18.11■□□□□ 0.49
CCDC88B-202ENST00000356786 RNF186Q9NXI6 227 aa18.11■□□□□ 0.49
CCDC88B-202ENST00000356786 KLHL13Q9P2N7 655 aa18.11■□□□□ 0.49
CCDC88B-202ENST00000356786 ASB1Q9Y576 335 aa18.11■□□□□ 0.49
CCDC88B-202ENST00000356786 HOXD11P31277 338 aaPredicted RBP18.11■□□□□ 0.49
CCDC88B-202ENST00000356786 WBP2NLQ6ICG8 309 aa18.11■□□□□ 0.49
CCDC88B-202ENST00000356786 ACSM5Q6NUN0 579 aa18.11■□□□□ 0.49
CCDC88B-202ENST00000356786 NIPAL3Q6P499 406 aa18.11■□□□□ 0.49
CCDC88B-202ENST00000356786 TMPPEQ6ZT21 453 aa18.11■□□□□ 0.49
CCDC88B-202ENST00000356786 OPALINQ96PE5 141 aa18.11■□□□□ 0.49
CCDC88B-202ENST00000356786 STARD5Q9NSY2 213 aa18.11■□□□□ 0.49
CCDC88B-202ENST00000356786 PLEK2Q9NYT0 353 aa18.11■□□□□ 0.49
CCDC88B-202ENST00000356786 ETV7Q9Y603 341 aa18.11■□□□□ 0.49
CCDC88B-202ENST00000356786 CYBAP13498 195 aa18.11■□□□□ 0.49
CCDC88B-202ENST00000356786 NTHL1P78549 312 aa18.11■□□□□ 0.49
CCDC88B-202ENST00000356786 OR7A5Q15622 319 aa18.11■□□□□ 0.49
CCDC88B-202ENST00000356786 FBXW12Q6X9E4 464 aa18.11■□□□□ 0.49
CCDC88B-202ENST00000356786 GDF7Q7Z4P5 450 aa18.11■□□□□ 0.49
CCDC88B-202ENST00000356786 CHTF18Q8WVB6 975 aa18.11■□□□□ 0.49
CCDC88B-202ENST00000356786 TBC1D20Q96BZ9 403 aa18.11■□□□□ 0.49
CCDC88B-202ENST00000356786 SRRQ9GZT4 340 aa18.11■□□□□ 0.49
CCDC88B-202ENST00000356786 CHST8Q9H2A9 424 aa18.11■□□□□ 0.49
CCDC88B-202ENST00000356786 CPNE7Q9UBL6 633 aa18.11■□□□□ 0.49
CCDC88B-202ENST00000356786 ZNF629Q9UEG4 869 aaPredicted RBP18.11■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms