RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 LAMP3Q9UQV4 416 aa13.33□□□□□ -0.28
COL7A1-201ENST00000328333 PIPP12273 146 aaPredicted RBP13.33□□□□□ -0.28
COL7A1-201ENST00000328333 GPX3P22352 226 aa13.33□□□□□ -0.28
COL7A1-201ENST00000328333 HTR1FP30939 366 aa13.33□□□□□ -0.28
COL7A1-201ENST00000328333 HNRNPA3P51991 378 aaKnown RBP13.33□□□□□ -0.28
COL7A1-201ENST00000328333 CBARPQ8N350 705 aaPredicted RBP13.33□□□□□ -0.28
COL7A1-201ENST00000328333 OR4N2Q8NGD1 307 aa13.33□□□□□ -0.28
COL7A1-201ENST00000328333 TMIGD2Q96BF3 282 aa13.33□□□□□ -0.28
COL7A1-201ENST00000328333 KLHDC7BQ96G42 594 aa13.33□□□□□ -0.28
COL7A1-201ENST00000328333 ERVMER34-1Q9H9K5 563 aa13.33□□□□□ -0.28
COL7A1-201ENST00000328333 GIMAP2Q9UG22 337 aa13.33□□□□□ -0.28
COL7A1-201ENST00000328333 SLC23A2Q9UGH3 650 aa13.33□□□□□ -0.28
COL7A1-201ENST00000328333 RPS19P39019 145 aaKnown RBP13.33□□□□□ -0.28
COL7A1-201ENST00000328333 KCNG2Q9UJ96 466 aa13.33□□□□□ -0.28
COL7A1-201ENST00000328333 GAB2Q9UQC2 676 aa13.33□□□□□ -0.28
COL7A1-201ENST00000328333 YARS2Q9Y2Z4 477 aaKnown RBP13.33□□□□□ -0.28
COL7A1-201ENST00000328333 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.33□□□□□ -0.28
COL7A1-201ENST00000328333 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.33□□□□□ -0.28
COL7A1-201ENST00000328333 LEFTY1O75610 366 aa13.33□□□□□ -0.28
COL7A1-201ENST00000328333 PRR11Q96HE9 360 aaPredicted RBP13.33□□□□□ -0.28
COL7A1-201ENST00000328333 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP13.33□□□□□ -0.28
COL7A1-201ENST00000328333 PLEK2Q9NYT0 353 aa13.33□□□□□ -0.28
COL7A1-201ENST00000328333 KCNK6Q9Y257 313 aa13.33□□□□□ -0.28
COL7A1-201ENST00000328333 DOCK5Q9H7D0 1870 aa13.33□□□□□ -0.28
COL7A1-201ENST00000328333 TMEM129A0AVI4 362 aa13.33□□□□□ -0.28
COL7A1-201ENST00000328333 CCR9P51686 369 aa13.33□□□□□ -0.28
COL7A1-201ENST00000328333 C2orf27AQ580R0 203 aa13.33□□□□□ -0.28
COL7A1-201ENST00000328333 SPRED1Q7Z699 444 aa13.33□□□□□ -0.28
COL7A1-201ENST00000328333 OR6K3Q8NGY3 331 aa13.33□□□□□ -0.28
COL7A1-201ENST00000328333 CD200R1Q8TD46 325 aa13.33□□□□□ -0.28
COL7A1-201ENST00000328333 TMEM98Q9Y2Y6 226 aa13.33□□□□□ -0.28
COL7A1-201ENST00000328333 ARAFP10398 606 aa13.32□□□□□ -0.28
COL7A1-201ENST00000328333 SMIM3Q9BZL3 60 aa13.32□□□□□ -0.28
COL7A1-201ENST00000328333 PSORS1C1Q9UIG5 152 aa13.32□□□□□ -0.28
COL7A1-201ENST00000328333 INSL6Q9Y581 213 aa13.32□□□□□ -0.28
COL7A1-201ENST00000328333 PTGDR2Q9Y5Y4 395 aa13.32□□□□□ -0.28
COL7A1-201ENST00000328333 DOCK6Q96HP0 2047 aa13.32□□□□□ -0.28
COL7A1-201ENST00000328333 SMPD1P17405 629 aa13.32□□□□□ -0.28
COL7A1-201ENST00000328333 TSPAN31Q12999 210 aa13.32□□□□□ -0.28
COL7A1-201ENST00000328333 AADACL3Q5VUY0 350 aa13.32□□□□□ -0.28
COL7A1-201ENST00000328333 FAM185AQ8N0U4 392 aa13.32□□□□□ -0.28
COL7A1-201ENST00000328333 CABLES2Q9BTV7 478 aa13.32□□□□□ -0.28
COL7A1-201ENST00000328333 A0A0D9SEW6 157 aa13.32□□□□□ -0.28
COL7A1-201ENST00000328333 OR6C68A6NDL8 312 aa13.32□□□□□ -0.28
COL7A1-201ENST00000328333 MGMTP16455 207 aa13.32□□□□□ -0.28
COL7A1-201ENST00000328333 ZNF28P17035 718 aa13.32□□□□□ -0.28
COL7A1-201ENST00000328333 DUSP1P28562 367 aa13.32□□□□□ -0.28
COL7A1-201ENST00000328333 HYAL2Q12891 473 aa13.32□□□□□ -0.28
COL7A1-201ENST00000328333 ACOT6Q3I5F7 207 aaPredicted RBP13.32□□□□□ -0.28
COL7A1-201ENST00000328333 CORO6Q6QEF8 472 aa13.32□□□□□ -0.28
COL7A1-201ENST00000328333 GRINAQ7Z429 371 aa13.32□□□□□ -0.28
COL7A1-201ENST00000328333 TOLLIPQ9H0E2 274 aa13.32□□□□□ -0.28
COL7A1-201ENST00000328333 A0A0B4J2A0 478 aa13.32□□□□□ -0.28
COL7A1-201ENST00000328333 CTXN2P0C2S0 81 aa13.32□□□□□ -0.28
COL7A1-201ENST00000328333 SLC2A1P11166 492 aa13.32□□□□□ -0.28
COL7A1-201ENST00000328333 HOXA1P49639 335 aaPredicted RBP13.32□□□□□ -0.28
COL7A1-201ENST00000328333 CD81P60033 236 aa13.32□□□□□ -0.28
COL7A1-201ENST00000328333 RAC1P63000 192 aa13.32□□□□□ -0.28
COL7A1-201ENST00000328333 PIN1Q13526 163 aaPredicted RBP13.32□□□□□ -0.28
COL7A1-201ENST00000328333 KIR2DS3Q14952 304 aa13.32□□□□□ -0.28
COL7A1-201ENST00000328333 TP53I3Q53FA7 332 aa13.32□□□□□ -0.28
COL7A1-201ENST00000328333 CLEC4DQ8WXI8 215 aa13.32□□□□□ -0.28
COL7A1-201ENST00000328333 SHPKQ9UHJ6 478 aa13.32□□□□□ -0.28
COL7A1-201ENST00000328333 SNRPGP15A8MWD9 76 aa13.32□□□□□ -0.28
COL7A1-201ENST00000328333 ZNF91Q05481 1191 aa13.32□□□□□ -0.28
COL7A1-201ENST00000328333 RPS27LQ71UM5 84 aaKnown RBP13.32□□□□□ -0.28
COL7A1-201ENST00000328333 OR6M1Q8NGM8 313 aa13.32□□□□□ -0.28
COL7A1-201ENST00000328333 OR13C8Q8NGS7 320 aa13.32□□□□□ -0.28
COL7A1-201ENST00000328333 OR52D1Q9H346 318 aa13.32□□□□□ -0.28
COL7A1-201ENST00000328333 C1orf198Q9H425 327 aa13.32□□□□□ -0.28
COL7A1-201ENST00000328333 TM7SF3Q9NS93 570 aa13.32□□□□□ -0.28
COL7A1-201ENST00000328333 ZNF230Q9UIE0 474 aaPredicted RBP13.32□□□□□ -0.28
COL7A1-201ENST00000328333 CSNK1G3Q9Y6M4 447 aa13.32□□□□□ -0.28
COL7A1-201ENST00000328333 KIR2DS1A0A191URI9 304 aa13.32□□□□□ -0.28
COL7A1-201ENST00000328333 HOXB2P14652 356 aa13.32□□□□□ -0.28
COL7A1-201ENST00000328333 KIR2DS4P43632 304 aa13.32□□□□□ -0.28
COL7A1-201ENST00000328333 CSNK1A1P48729 337 aa13.32□□□□□ -0.28
COL7A1-201ENST00000328333 CCL23P55773 120 aa13.32□□□□□ -0.28
COL7A1-201ENST00000328333 DGKZQ13574 1117 aa13.32□□□□□ -0.28
COL7A1-201ENST00000328333 KIR2DS1Q14954 304 aa13.32□□□□□ -0.28
COL7A1-201ENST00000328333 AJAP1Q9UKB5 411 aaPredicted RBP13.32□□□□□ -0.28
COL7A1-201ENST00000328333 V9GYS6 101 aa13.32□□□□□ -0.28
COL7A1-201ENST00000328333 CDC123O75794 336 aaPredicted RBP13.32□□□□□ -0.28
COL7A1-201ENST00000328333 TBX18O95935 607 aa13.32□□□□□ -0.28
COL7A1-201ENST00000328333 ZNF728P0DKX0 622 aa13.32□□□□□ -0.28
COL7A1-201ENST00000328333 SPINT3P49223 89 aa13.32□□□□□ -0.28
COL7A1-201ENST00000328333 RBMXL3Q8N7X1 1067 aaKnown RBP13.32□□□□□ -0.28
COL7A1-201ENST00000328333 BOLLQ8N9W6 283 aaKnown RBP13.32□□□□□ -0.28
COL7A1-201ENST00000328333 METTL9Q9H1A3 318 aa13.32□□□□□ -0.28
COL7A1-201ENST00000328333 ACAD8Q9UKU7 415 aa13.32□□□□□ -0.28
COL7A1-201ENST00000328333 KCTD3Q9Y597 815 aa13.32□□□□□ -0.28
COL7A1-201ENST00000328333 TMEM269A0A1B0GVZ9 245 aa13.32□□□□□ -0.28
COL7A1-201ENST00000328333 A0A1W2PRU2 124 aa13.32□□□□□ -0.28
COL7A1-201ENST00000328333 TRAF3IP2O43734 574 aaPredicted RBP13.32□□□□□ -0.28
COL7A1-201ENST00000328333 SRMP19623 302 aa13.32□□□□□ -0.28
COL7A1-201ENST00000328333 SULT1A2P50226 295 aa13.32□□□□□ -0.28
COL7A1-201ENST00000328333 ERVPABLB-1P60509 514 aa13.32□□□□□ -0.28
COL7A1-201ENST00000328333 BORCS6Q96GS4 357 aa13.32□□□□□ -0.28
COL7A1-201ENST00000328333 MSLNLQ96KJ4 702 aa13.32□□□□□ -0.28
COL7A1-201ENST00000328333 GSTO2Q9H4Y5 243 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms