RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 TUBA1BP68363 451 aa17.06■□□□□ 0.32
LIME1-201ENST00000309546 TUBA4AP68366 448 aa17.06■□□□□ 0.32
LIME1-201ENST00000309546 KRTAP1-1Q07627 177 aa17.06■□□□□ 0.32
LIME1-201ENST00000309546 DMTNQ08495 405 aa17.06■□□□□ 0.32
LIME1-201ENST00000309546 C1DQ13901 141 aaKnown RBP17.06■□□□□ 0.32
LIME1-201ENST00000309546 FAM69AQ5T7M9 428 aa17.06■□□□□ 0.32
LIME1-201ENST00000309546 HMBOX1Q6NT76 420 aa17.06■□□□□ 0.32
LIME1-201ENST00000309546 ZNF544Q6NX49 715 aa17.06■□□□□ 0.32
LIME1-201ENST00000309546 C5orf46Q6UWT4 87 aa17.06■□□□□ 0.32
LIME1-201ENST00000309546 TUBA1AQ71U36 451 aa17.06■□□□□ 0.32
LIME1-201ENST00000309546 LINGO2Q7L985 606 aa17.06■□□□□ 0.32
LIME1-201ENST00000309546 HDXQ7Z353 690 aa17.06■□□□□ 0.32
LIME1-201ENST00000309546 DHDDSQ86SQ9 333 aa17.06■□□□□ 0.32
LIME1-201ENST00000309546 LSMEM1Q8N8F7 131 aa17.06■□□□□ 0.32
LIME1-201ENST00000309546 ZNF417Q8TAU3 575 aa17.06■□□□□ 0.32
LIME1-201ENST00000309546 DNAJA4Q8WW22 397 aaPredicted RBP17.06■□□□□ 0.32
LIME1-201ENST00000309546 TAAR8Q969N4 342 aa17.06■□□□□ 0.32
LIME1-201ENST00000309546 MAGEB18Q96M61 343 aa17.06■□□□□ 0.32
LIME1-201ENST00000309546 ZNF587Q96SQ5 575 aaPredicted RBP17.06■□□□□ 0.32
LIME1-201ENST00000309546 TMEM38AQ9H6F2 299 aa17.06■□□□□ 0.32
LIME1-201ENST00000309546 LEF1Q9UJU2 399 aaPredicted RBP17.06■□□□□ 0.32
LIME1-201ENST00000309546 PRORSD1PA6NEY8 169 aa17.05■□□□□ 0.32
LIME1-201ENST00000309546 AIM2O14862 343 aa17.05■□□□□ 0.32
LIME1-201ENST00000309546 OR2T1O43869 369 aa17.05■□□□□ 0.32
LIME1-201ENST00000309546 SERPINB7O75635 380 aa17.05■□□□□ 0.32
LIME1-201ENST00000309546 TP53P04637 393 aaPredicted RBP17.05■□□□□ 0.32
LIME1-201ENST00000309546 GRPRP30550 384 aa17.05■□□□□ 0.32
LIME1-201ENST00000309546 ROR2Q01974 943 aaKnown RBP17.05■□□□□ 0.32
LIME1-201ENST00000309546 RAB35Q15286 201 aa17.05■□□□□ 0.32
LIME1-201ENST00000309546 ULK3Q6PHR2 472 aa17.05■□□□□ 0.32
LIME1-201ENST00000309546 ARMC8Q8IUR7 673 aa17.05■□□□□ 0.32
LIME1-201ENST00000309546 HIPK4Q8NE63 616 aa17.05■□□□□ 0.32
LIME1-201ENST00000309546 CKAP2Q8WWK9 683 aa17.05■□□□□ 0.32
LIME1-201ENST00000309546 OXGR1Q96P68 337 aa17.05■□□□□ 0.32
LIME1-201ENST00000309546 KCNS3Q9BQ31 491 aa17.05■□□□□ 0.32
LIME1-201ENST00000309546 RHNO1Q9BSD3 238 aa17.05■□□□□ 0.32
LIME1-201ENST00000309546 NPHS2Q9NP85 383 aa17.05■□□□□ 0.32
LIME1-201ENST00000309546 OBP2BQ9NPH6 170 aa17.05■□□□□ 0.32
LIME1-201ENST00000309546 B3GAT1Q9P2W7 334 aa17.05■□□□□ 0.32
LIME1-201ENST00000309546 GMEB1Q9Y692 573 aa17.05■□□□□ 0.32
LIME1-201ENST00000309546 ALPK2Q86TB3 2170 aa17.05■□□□□ 0.32
LIME1-201ENST00000309546 IGKV1D-42A0A075B6H8 117 aa17.04■□□□□ 0.32
LIME1-201ENST00000309546 TRAV36DV7A0A075B6V5 113 aa17.04■□□□□ 0.32
LIME1-201ENST00000309546 A0A096LPE4 126 aa17.04■□□□□ 0.32
LIME1-201ENST00000309546 IGHV1-18A0A0C4DH31 117 aa17.04■□□□□ 0.32
LIME1-201ENST00000309546 A0A1W2PPZ6 126 aa17.04■□□□□ 0.32
LIME1-201ENST00000309546 ANGPT2O15123 496 aa17.04■□□□□ 0.32
LIME1-201ENST00000309546 SLC43A1O75387 559 aa17.04■□□□□ 0.32
LIME1-201ENST00000309546 MTPNP58546 118 aa17.04■□□□□ 0.32
LIME1-201ENST00000309546 OR1Q1Q15612 314 aa17.04■□□□□ 0.32
LIME1-201ENST00000309546 CYP51A1Q16850 503 aa17.04■□□□□ 0.32
LIME1-201ENST00000309546 RUNDC3AQ59EK9 446 aa17.04■□□□□ 0.32
LIME1-201ENST00000309546 C1QTNF12Q5T7M4 302 aa17.04■□□□□ 0.32
LIME1-201ENST00000309546 CLEC2AQ6UVW9 174 aa17.04■□□□□ 0.32
LIME1-201ENST00000309546 DLEU7Q6UYE1 221 aa17.04■□□□□ 0.32
LIME1-201ENST00000309546 DNM1P46Q6ZS02 220 aa17.04■□□□□ 0.32
LIME1-201ENST00000309546 PRIMA1Q86XR5 153 aa17.04■□□□□ 0.32
LIME1-201ENST00000309546 SMYD1Q8NB12 490 aa17.04■□□□□ 0.32
LIME1-201ENST00000309546 SLC47A1Q96FL8 570 aa17.04■□□□□ 0.32
LIME1-201ENST00000309546 SLC38A2Q96QD8 506 aa17.04■□□□□ 0.32
LIME1-201ENST00000309546 LINC00470Q9BZP3 86 aa17.04■□□□□ 0.32
LIME1-201ENST00000309546 TMEM27Q9HBJ8 222 aa17.04■□□□□ 0.32
LIME1-201ENST00000309546 ARGLU1Q9NWB6 273 aaPredicted RBP17.04■□□□□ 0.32
LIME1-201ENST00000309546 KLHL14Q9P2G3 628 aa17.04■□□□□ 0.32
LIME1-201ENST00000309546 TRIM33Q9UPN9 1127 aa17.04■□□□□ 0.32
LIME1-201ENST00000309546 RCE1Q9Y256 329 aa17.04■□□□□ 0.32
LIME1-201ENST00000309546 NDUFAF1Q9Y375 327 aa17.04■□□□□ 0.32
LIME1-201ENST00000309546 CHD3Q12873 2000 aaKnown RBP17.03■□□□□ 0.32
LIME1-201ENST00000309546 IGHV4-30-2A0A087WSY4 118 aa17.03■□□□□ 0.32
LIME1-201ENST00000309546 AKAP8O43823 692 aaKnown RBP17.03■□□□□ 0.32
LIME1-201ENST00000309546 OPN1SWP03999 348 aa17.03■□□□□ 0.32
LIME1-201ENST00000309546 NQO1P15559 274 aaKnown RBP17.03■□□□□ 0.32
LIME1-201ENST00000309546 APOBEC3AP31941 199 aaPredicted RBP17.03■□□□□ 0.32
LIME1-201ENST00000309546 CHRNB3Q05901 458 aa17.03■□□□□ 0.32
LIME1-201ENST00000309546 SELPLGQ14242 412 aa17.03■□□□□ 0.32
LIME1-201ENST00000309546 ADRM1Q16186 407 aa17.03■□□□□ 0.32
LIME1-201ENST00000309546 FAM91A1Q658Y4 838 aa17.03■□□□□ 0.32
LIME1-201ENST00000309546 RANBP3LQ86VV4 465 aaPredicted RBP17.03■□□□□ 0.32
LIME1-201ENST00000309546 GPR137CQ8N3F9 429 aa17.03■□□□□ 0.32
LIME1-201ENST00000309546 BHLHE22Q8NFJ8 381 aaPredicted RBP17.03■□□□□ 0.32
LIME1-201ENST00000309546 BCL2L2Q92843 193 aaPredicted RBP17.03■□□□□ 0.32
LIME1-201ENST00000309546 FBXO17Q96EF6 278 aa17.03■□□□□ 0.32
LIME1-201ENST00000309546 WFDC6Q9BQY6 131 aa17.03■□□□□ 0.32
LIME1-201ENST00000309546 A0A0B4J2E0 115 aa17.02■□□□□ 0.32
LIME1-201ENST00000309546 A0A1B0GX12 115 aa17.02■□□□□ 0.32
LIME1-201ENST00000309546 M0R3H8 397 aa17.02■□□□□ 0.32
LIME1-201ENST00000309546 BMP4P12644 408 aa17.02■□□□□ 0.32
LIME1-201ENST00000309546 SH3BGRP55822 239 aaPredicted RBP17.02■□□□□ 0.32
LIME1-201ENST00000309546 NFYCQ13952 458 aa17.02■□□□□ 0.32
LIME1-201ENST00000309546 CARD17Q5XLA6 110 aa17.02■□□□□ 0.32
LIME1-201ENST00000309546 ANKRD16Q6P6B7 361 aa17.02■□□□□ 0.32
LIME1-201ENST00000309546 H1FNTQ75WM6 255 aaPredicted RBP17.02■□□□□ 0.32
LIME1-201ENST00000309546 NET1Q7Z628 596 aaPredicted RBP17.02■□□□□ 0.32
LIME1-201ENST00000309546 RETREG3Q86VR2 466 aa17.02■□□□□ 0.32
LIME1-201ENST00000309546 PTOV1Q86YD1 416 aa17.02■□□□□ 0.32
LIME1-201ENST00000309546 UEVLDQ8IX04 471 aa17.02■□□□□ 0.32
LIME1-201ENST00000309546 C10orf53Q8N6V4 93 aa17.02■□□□□ 0.32
LIME1-201ENST00000309546 ZNF525Q8N782 197 aa17.02■□□□□ 0.32
LIME1-201ENST00000309546 C11orf65Q8NCR3 313 aa17.02■□□□□ 0.32
LIME1-201ENST00000309546 BOD1Q96IK1 185 aa17.02■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms