RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 CD1DP15813 335 aa13.01□□□□□ -0.33
CCDC88A-201ENST00000263630 DIO3P55073 304 aa13.01□□□□□ -0.33
CCDC88A-201ENST00000263630 SOWAHAQ2M3V2 549 aa13.01□□□□□ -0.33
CCDC88A-201ENST00000263630 SYPL2Q5VXT5 272 aa13.01□□□□□ -0.33
CCDC88A-201ENST00000263630 LRRC18Q8N456 261 aa13.01□□□□□ -0.33
CCDC88A-201ENST00000263630 IFI44Q8TCB0 444 aa13.01□□□□□ -0.33
CCDC88A-201ENST00000263630 HLA-CQ95604 372 aa13.01□□□□□ -0.33
CCDC88A-201ENST00000263630 FAM103A1Q9BTL3 118 aaKnown RBP13.01□□□□□ -0.33
CCDC88A-201ENST00000263630 OR51I2Q9H344 312 aa13.01□□□□□ -0.33
CCDC88A-201ENST00000263630 C8orf33Q9H7E9 229 aaPredicted RBP13.01□□□□□ -0.33
CCDC88A-201ENST00000263630 FBXO34Q9NWN3 711 aa13.01□□□□□ -0.33
CCDC88A-201ENST00000263630 SRPK3Q9UPE1 567 aa13.01□□□□□ -0.33
CCDC88A-201ENST00000263630 FAM171A2A8MVW0 826 aa13.01□□□□□ -0.33
CCDC88A-201ENST00000263630 JTBO76095 146 aa13.01□□□□□ -0.33
CCDC88A-201ENST00000263630 MMP7P09237 267 aaPredicted RBP13.01□□□□□ -0.33
CCDC88A-201ENST00000263630 OR2G3Q8NGZ4 309 aa13.01□□□□□ -0.33
CCDC88A-201ENST00000263630 OTOFQ9HC10 1997 aa13.01□□□□□ -0.33
CCDC88A-201ENST00000263630 PMS2P1A4D2B8 440 aa13.01□□□□□ -0.33
CCDC88A-201ENST00000263630 LGALS8O00214 317 aa13.01□□□□□ -0.33
CCDC88A-201ENST00000263630 GLCEO94923 617 aa13.01□□□□□ -0.33
CCDC88A-201ENST00000263630 H2AFB1P0C5Y9 115 aa13.01□□□□□ -0.33
CCDC88A-201ENST00000263630 S100A11P31949 105 aa13.01□□□□□ -0.33
CCDC88A-201ENST00000263630 RABGGTBP53611 331 aa13.01□□□□□ -0.33
CCDC88A-201ENST00000263630 SQSTM1Q13501 440 aa13.01□□□□□ -0.33
CCDC88A-201ENST00000263630 ACOT6Q3I5F7 207 aaPredicted RBP13.01□□□□□ -0.33
CCDC88A-201ENST00000263630 RPL22L1Q6P5R6 122 aaKnown RBP13.01□□□□□ -0.33
CCDC88A-201ENST00000263630 ZNF566Q969W8 418 aa13.01□□□□□ -0.33
CCDC88A-201ENST00000263630 UCK1Q9HA47 277 aa13.01□□□□□ -0.33
CCDC88A-201ENST00000263630 USP36Q9P275 1121 aaKnown RBP13.01□□□□□ -0.33
CCDC88A-201ENST00000263630 CSNK1G3Q9Y6M4 447 aa13.01□□□□□ -0.33
CCDC88A-201ENST00000263630 HELTA6NFD8 242 aa13.01□□□□□ -0.33
CCDC88A-201ENST00000263630 TAAR5O14804 337 aa13.01□□□□□ -0.33
CCDC88A-201ENST00000263630 FCGR2AP12318 317 aa13.01□□□□□ -0.33
CCDC88A-201ENST00000263630 BMP2P12643 396 aa13.01□□□□□ -0.33
CCDC88A-201ENST00000263630 ERHP84090 104 aaKnown RBP13.01□□□□□ -0.33
CCDC88A-201ENST00000263630 SIAH1Q8IUQ4 282 aa13.01□□□□□ -0.33
CCDC88A-201ENST00000263630 GGHQ92820 318 aa13.01□□□□□ -0.33
CCDC88A-201ENST00000263630 CACNG3O60359 315 aa13.01□□□□□ -0.33
CCDC88A-201ENST00000263630 HMGCLP35914 325 aa13.01□□□□□ -0.33
CCDC88A-201ENST00000263630 TPPP2P59282 170 aa13.01□□□□□ -0.33
CCDC88A-201ENST00000263630 TUSC1Q2TAM9 212 aa13.01□□□□□ -0.33
CCDC88A-201ENST00000263630 FAM26DQ5JW98 314 aa13.01□□□□□ -0.33
CCDC88A-201ENST00000263630 FIBINQ8TAL6 211 aa13.01□□□□□ -0.33
CCDC88A-201ENST00000263630 KCNE4Q8WWG9 221 aa13.01□□□□□ -0.33
CCDC88A-201ENST00000263630 DPH2Q9BQC3 489 aaPredicted RBP13.01□□□□□ -0.33
CCDC88A-201ENST00000263630 VDAC3Q9Y277 283 aa13.01□□□□□ -0.33
CCDC88A-201ENST00000263630 INSL5Q9Y5Q6 135 aa13.01□□□□□ -0.33
CCDC88A-201ENST00000263630 H3BQ06 376 aaPredicted RBP13.01□□□□□ -0.33
CCDC88A-201ENST00000263630 B3GNTL1Q67FW5 361 aaPredicted RBP13.01□□□□□ -0.33
CCDC88A-201ENST00000263630 FIGLAQ6QHK4 219 aa13.01□□□□□ -0.33
CCDC88A-201ENST00000263630 SDR9C7Q8NEX9 313 aa13.01□□□□□ -0.33
CCDC88A-201ENST00000263630 TSLPQ969D9 159 aa13.01□□□□□ -0.33
CCDC88A-201ENST00000263630 SFXN1Q9H9B4 322 aa13.01□□□□□ -0.33
CCDC88A-201ENST00000263630 ADAMTS6Q9UKP5 1117 aa13.01□□□□□ -0.33
CCDC88A-201ENST00000263630 GPRIN2O60269 458 aa13□□□□□ -0.33
CCDC88A-201ENST00000263630 PMS2P2O95744 297 aa13□□□□□ -0.33
CCDC88A-201ENST00000263630 F10P00742 488 aa13□□□□□ -0.33
CCDC88A-201ENST00000263630 SCGB1A1P11684 91 aa13□□□□□ -0.33
CCDC88A-201ENST00000263630 DGAT2L6Q6ZPD8 337 aa13□□□□□ -0.33
CCDC88A-201ENST00000263630 OR10G3Q8NGC4 313 aa13□□□□□ -0.33
CCDC88A-201ENST00000263630 OR8J2Q8NGG1 315 aa13□□□□□ -0.33
CCDC88A-201ENST00000263630 EPHX3Q9H6B9 360 aa13□□□□□ -0.33
CCDC88A-201ENST00000263630 CXXC1Q9P0U4 656 aaPredicted RBP13□□□□□ -0.33
CCDC88A-201ENST00000263630 A0A1W2PP55 124 aa13□□□□□ -0.33
CCDC88A-201ENST00000263630 GPLD1P80108 840 aa13□□□□□ -0.33
CCDC88A-201ENST00000263630 TEKQ02763 1124 aa13□□□□□ -0.33
CCDC88A-201ENST00000263630 UNC50Q53HI1 259 aa13□□□□□ -0.33
CCDC88A-201ENST00000263630 OR5H6Q8NGV6 325 aa13□□□□□ -0.33
CCDC88A-201ENST00000263630 LINC00597Q9H2U6 94 aa13□□□□□ -0.33
CCDC88A-201ENST00000263630 SLAMF7Q9NQ25 335 aa13□□□□□ -0.33
CCDC88A-201ENST00000263630 OR52A1Q9UKL2 312 aa13□□□□□ -0.33
CCDC88A-201ENST00000263630 ENTPD2Q9Y5L3 495 aa13□□□□□ -0.33
CCDC88A-201ENST00000263630 TMEM72A0PK05 275 aa13□□□□□ -0.33
CCDC88A-201ENST00000263630 SOCS6O14544 535 aa13□□□□□ -0.33
CCDC88A-201ENST00000263630 CASP7P55210 303 aa13□□□□□ -0.33
CCDC88A-201ENST00000263630 LYPD4Q6UWN0 246 aa13□□□□□ -0.33
CCDC88A-201ENST00000263630 C1GALT1Q9NS00 363 aa13□□□□□ -0.33
CCDC88A-201ENST00000263630 FAM198AQ9UFP1 575 aa13□□□□□ -0.33
CCDC88A-201ENST00000263630 INTS6Q9UL03 887 aaKnown RBP13□□□□□ -0.33
CCDC88A-201ENST00000263630 ZDHHC24Q6UX98 284 aa13□□□□□ -0.33
CCDC88A-201ENST00000263630 Q6ZTK2 550 aa13□□□□□ -0.33
CCDC88A-201ENST00000263630 EID2Q8N6I1 236 aa13□□□□□ -0.33
CCDC88A-201ENST00000263630 RANGRFQ9HD47 186 aaPredicted RBP13□□□□□ -0.33
CCDC88A-201ENST00000263630 CNIH4Q9P003 139 aa13□□□□□ -0.33
CCDC88A-201ENST00000263630 RRADP55042 308 aa13□□□□□ -0.33
CCDC88A-201ENST00000263630 KCNJ15Q99712 375 aa13□□□□□ -0.33
CCDC88A-201ENST00000263630 SELENOIQ9C0D9 397 aa13□□□□□ -0.33
CCDC88A-201ENST00000263630 CRLF2Q9HC73 371 aa13□□□□□ -0.33
CCDC88A-201ENST00000263630 RAD1O60671 282 aa13□□□□□ -0.33
CCDC88A-201ENST00000263630 GNB1P62873 340 aa13□□□□□ -0.33
CCDC88A-201ENST00000263630 OR10X1Q8NGY0 326 aa13□□□□□ -0.33
CCDC88A-201ENST00000263630 ZFYVE21Q9BQ24 234 aa13□□□□□ -0.33
CCDC88A-201ENST00000263630 ANKRD60Q9BZ19 345 aa13□□□□□ -0.33
CCDC88A-201ENST00000263630 ZCWPW2A0A1B0GU75 182 aa13□□□□□ -0.33
CCDC88A-201ENST00000263630 ZNF17P17021 662 aa13□□□□□ -0.33
CCDC88A-201ENST00000263630 IQCJQ1A5X6 159 aa13□□□□□ -0.33
CCDC88A-201ENST00000263630 OR52B6Q8NGF0 335 aa13□□□□□ -0.33
CCDC88A-201ENST00000263630 GNPNAT1Q96EK6 184 aaPredicted RBP13□□□□□ -0.33
CCDC88A-201ENST00000263630 SIAEQ9HAT2 523 aa13□□□□□ -0.33
CCDC88A-201ENST00000263630 GABRQQ9UN88 632 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms