RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 VWA1Q6PCB0 445 aa15.85■□□□□ 0.13
CLN3-247ENST00000636351 C5orf46Q6UWT4 87 aa15.85■□□□□ 0.13
CLN3-247ENST00000636351 FAM214BQ7L5A3 538 aa15.85■□□□□ 0.13
CLN3-247ENST00000636351 LUZP2Q86TE4 346 aa15.85■□□□□ 0.13
CLN3-247ENST00000636351 TSPYL5Q86VY4 417 aaPredicted RBP15.85■□□□□ 0.13
CLN3-247ENST00000636351 C10orf53Q8N6V4 93 aa15.85■□□□□ 0.13
CLN3-247ENST00000636351 PIGXQ8TBF5 258 aa15.85■□□□□ 0.13
CLN3-247ENST00000636351 SLC25A36Q96CQ1 311 aa15.85■□□□□ 0.13
CLN3-247ENST00000636351 KTI12Q96EK9 354 aaPredicted RBP15.85■□□□□ 0.13
CLN3-247ENST00000636351 EPYCQ99645 322 aa15.85■□□□□ 0.13
CLN3-247ENST00000636351 POLR2J2Q9GZM3 115 aaKnown RBP15.85■□□□□ 0.13
CLN3-247ENST00000636351 POLR2J3Q9H1A7 115 aaKnown RBP15.85■□□□□ 0.13
CLN3-247ENST00000636351 PIGMQ9H3S5 423 aa15.85■□□□□ 0.13
CLN3-247ENST00000636351 GORASP2Q9H8Y8 452 aa15.85■□□□□ 0.13
CLN3-247ENST00000636351 DCAF13Q9NV06 445 aaKnown RBP15.85■□□□□ 0.13
CLN3-247ENST00000636351 KLHL13Q9P2N7 655 aa15.85■□□□□ 0.13
CLN3-247ENST00000636351 TRAPPC4Q9Y296 219 aa15.85■□□□□ 0.13
CLN3-247ENST00000636351 VPS13CQ709C8 3753 aa15.85■□□□□ 0.13
CLN3-247ENST00000636351 NAV3Q8IVL0 2385 aa15.84■□□□□ 0.13
CLN3-247ENST00000636351 IGKV1D-42A0A075B6H8 117 aa15.84■□□□□ 0.13
CLN3-247ENST00000636351 TRAV36DV7A0A075B6V5 113 aa15.84■□□□□ 0.13
CLN3-247ENST00000636351 CYTIPO60759 359 aa15.84■□□□□ 0.13
CLN3-247ENST00000636351 TNFSF13O75888 250 aa15.84■□□□□ 0.13
CLN3-247ENST00000636351 OR5F1O95221 314 aa15.84■□□□□ 0.13
CLN3-247ENST00000636351 STAMBPO95630 424 aa15.84■□□□□ 0.13
CLN3-247ENST00000636351 FOSL1P15407 271 aa15.84■□□□□ 0.13
CLN3-247ENST00000636351 AGTR1P30556 359 aa15.84■□□□□ 0.13
CLN3-247ENST00000636351 KIR2DL2P43627 348 aaPredicted RBP15.84■□□□□ 0.13
CLN3-247ENST00000636351 YAP1P46937 504 aaKnown RBP15.84■□□□□ 0.13
CLN3-247ENST00000636351 KEAP1Q14145 624 aa15.84■□□□□ 0.13
CLN3-247ENST00000636351 FXNQ16595 210 aa15.84■□□□□ 0.13
CLN3-247ENST00000636351 DEFB113Q30KQ7 82 aa15.84■□□□□ 0.13
CLN3-247ENST00000636351 OTUD3Q5T2D3 398 aaPredicted RBP15.84■□□□□ 0.13
CLN3-247ENST00000636351 ABLIM2Q6H8Q1 611 aa15.84■□□□□ 0.13
CLN3-247ENST00000636351 CYP2R1Q6VVX0 501 aa15.84■□□□□ 0.13
CLN3-247ENST00000636351 KIF18BQ86Y91 864 aa15.84■□□□□ 0.13
CLN3-247ENST00000636351 WFDC11Q8NEX6 87 aa15.84■□□□□ 0.13
CLN3-247ENST00000636351 CLPTM1LQ96KA5 538 aa15.84■□□□□ 0.13
CLN3-247ENST00000636351 PRRC1Q96M27 445 aa15.84■□□□□ 0.13
CLN3-247ENST00000636351 C12orf49Q9H741 205 aa15.84■□□□□ 0.13
CLN3-247ENST00000636351 EMC3Q9P0I2 261 aa15.84■□□□□ 0.13
CLN3-247ENST00000636351 RIMS3Q9UJD0 308 aa15.84■□□□□ 0.13
CLN3-247ENST00000636351 PROCRQ9UNN8 238 aa15.84■□□□□ 0.13
CLN3-247ENST00000636351 KPNA4O00629 521 aaPredicted RBP15.83■□□□□ 0.12
CLN3-247ENST00000636351 NPIPB7O75200 414 aa15.83■□□□□ 0.12
CLN3-247ENST00000636351 AKR7A3O95154 331 aa15.83■□□□□ 0.12
CLN3-247ENST00000636351 CBLP22681 906 aa15.83■□□□□ 0.12
CLN3-247ENST00000636351 SORDQ00796 357 aa15.83■□□□□ 0.12
CLN3-247ENST00000636351 EGR4Q05215 589 aa15.83■□□□□ 0.12
CLN3-247ENST00000636351 BNIP1Q12981 228 aa15.83■□□□□ 0.12
CLN3-247ENST00000636351 PIN1Q13526 163 aaPredicted RBP15.83■□□□□ 0.12
CLN3-247ENST00000636351 FAM69AQ5T7M9 428 aa15.83■□□□□ 0.12
CLN3-247ENST00000636351 TTC33Q6PID6 262 aaPredicted RBP15.83■□□□□ 0.12
CLN3-247ENST00000636351 PAQR6Q6TCH4 344 aa15.83■□□□□ 0.12
CLN3-247ENST00000636351 WDR88Q6ZMY6 472 aa15.83■□□□□ 0.12
CLN3-247ENST00000636351 BTLAQ7Z6A9 289 aa15.83■□□□□ 0.12
CLN3-247ENST00000636351 CYP4Z1Q86W10 505 aa15.83■□□□□ 0.12
CLN3-247ENST00000636351 CCDC103Q8IW40 242 aa15.83■□□□□ 0.12
CLN3-247ENST00000636351 TUSC5Q8IXB3 177 aa15.83■□□□□ 0.12
CLN3-247ENST00000636351 FAM86B1Q8N7N1 296 aa15.83■□□□□ 0.12
CLN3-247ENST00000636351 OR6K3Q8NGY3 331 aa15.83■□□□□ 0.12
CLN3-247ENST00000636351 MFSD8Q8NHS3 518 aa15.83■□□□□ 0.12
CLN3-247ENST00000636351 TAAR8Q969N4 342 aa15.83■□□□□ 0.12
CLN3-247ENST00000636351 MPP4Q96JB8 637 aa15.83■□□□□ 0.12
CLN3-247ENST00000636351 TACO1Q9BSH4 297 aaKnown RBP15.83■□□□□ 0.12
CLN3-247ENST00000636351 TMEM43Q9BTV4 400 aa15.83■□□□□ 0.12
CLN3-247ENST00000636351 PTDSS2Q9BVG9 487 aa15.83■□□□□ 0.12
CLN3-247ENST00000636351 AMBRA1Q9C0C7 1298 aa15.83■□□□□ 0.12
CLN3-247ENST00000636351 MUC13Q9H3R2 512 aa15.83■□□□□ 0.12
CLN3-247ENST00000636351 J3KTA2 159 aa15.82■□□□□ 0.12
CLN3-247ENST00000636351 OR2T1O43869 369 aa15.82■□□□□ 0.12
CLN3-247ENST00000636351 THY1P04216 161 aa15.82■□□□□ 0.12
CLN3-247ENST00000636351 ATP6V1B2P21281 511 aa15.82■□□□□ 0.12
CLN3-247ENST00000636351 IL1RL1Q01638 556 aa15.82■□□□□ 0.12
CLN3-247ENST00000636351 POU4F3Q15319 338 aa15.82■□□□□ 0.12
CLN3-247ENST00000636351 GUSBP1Q15486 140 aa15.82■□□□□ 0.12
CLN3-247ENST00000636351 MCUR1Q96AQ8 359 aa15.82■□□□□ 0.12
CLN3-247ENST00000636351 SLC7A6OSQ96CW6 309 aaPredicted RBP15.82■□□□□ 0.12
CLN3-247ENST00000636351 STARD4Q96DR4 205 aa15.82■□□□□ 0.12
CLN3-247ENST00000636351 ZNF300Q96RE9 604 aaPredicted RBP15.82■□□□□ 0.12
CLN3-247ENST00000636351 PSD2Q9BQI7 771 aa15.82■□□□□ 0.12
CLN3-247ENST00000636351 BTBD10Q9BSF8 475 aa15.82■□□□□ 0.12
CLN3-247ENST00000636351 FNDC11Q9BVV2 318 aa15.82■□□□□ 0.12
CLN3-247ENST00000636351 RBM24Q9BX46 236 aaKnown RBP15.82■□□□□ 0.12
CLN3-247ENST00000636351 OPN3Q9H1Y3 402 aaPredicted RBP15.82■□□□□ 0.12
CLN3-247ENST00000636351 PLEKHF2Q9H8W4 249 aa15.82■□□□□ 0.12
CLN3-247ENST00000636351 GP6Q9HCN6 339 aa15.82■□□□□ 0.12
CLN3-247ENST00000636351 JKAMPQ9P055 326 aa15.82■□□□□ 0.12
CLN3-247ENST00000636351 ACTR3BQ9P1U1 418 aa15.82■□□□□ 0.12
CLN3-247ENST00000636351 RHCGQ9UBD6 479 aa15.82■□□□□ 0.12
CLN3-247ENST00000636351 FAM32AQ9Y421 112 aaKnown RBP15.82■□□□□ 0.12
CLN3-247ENST00000636351 AQP7P3A6NL99 342 aa15.81■□□□□ 0.12
CLN3-247ENST00000636351 ZNF814B7Z6K7 855 aa15.81■□□□□ 0.12
CLN3-247ENST00000636351 hCG_2039718K7EN88 272 aa15.81■□□□□ 0.12
CLN3-247ENST00000636351 RAMP1O60894 148 aa15.81■□□□□ 0.12
CLN3-247ENST00000636351 DNAJC8O75937 253 aaPredicted RBP15.81■□□□□ 0.12
CLN3-247ENST00000636351 ATP5HO75947 161 aa15.81■□□□□ 0.12
CLN3-247ENST00000636351 LYPD3O95274 346 aa15.81■□□□□ 0.12
CLN3-247ENST00000636351 YES1P07947 543 aa15.81■□□□□ 0.12
CLN3-247ENST00000636351 RASSF2P50749 326 aa15.81■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms