RNA–Protein interactions for RNA: ENST00000599322.5

LIG1-218, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-218ENST00000599322 CLOCKO15516 846 aa12.49□□□□□ -0.41
LIG1-218ENST00000599322 RAD51DO75771 328 aa12.49□□□□□ -0.41
LIG1-218ENST00000599322 LGI1O95970 557 aa12.49□□□□□ -0.41
LIG1-218ENST00000599322 COX5AP20674 150 aa12.49□□□□□ -0.41
LIG1-218ENST00000599322 IGHV1-2P23083 117 aa12.49□□□□□ -0.41
LIG1-218ENST00000599322 ZNF613Q6PF04 617 aa12.49□□□□□ -0.41
LIG1-218ENST00000599322 PTOV1Q86YD1 416 aa12.49□□□□□ -0.41
LIG1-218ENST00000599322 C10orf111Q8N326 155 aa12.49□□□□□ -0.41
LIG1-218ENST00000599322 ZNF433Q8N7K0 673 aaPredicted RBP12.49□□□□□ -0.41
LIG1-218ENST00000599322 RP9Q8TA86 221 aaKnown RBP12.49□□□□□ -0.41
LIG1-218ENST00000599322 RADILQ96JH8 1075 aa12.49□□□□□ -0.41
LIG1-218ENST00000599322 CXXC4Q9H2H0 198 aa12.49□□□□□ -0.41
LIG1-218ENST00000599322 SLCO5A1Q9H2Y9 848 aa12.49□□□□□ -0.41
LIG1-218ENST00000599322 CXorf56Q9H5V9 222 aa12.49□□□□□ -0.41
LIG1-218ENST00000599322 MALT1Q9UDY8 824 aa12.49□□□□□ -0.41
LIG1-218ENST00000599322 MGAT4BQ9UQ53 548 aa12.49□□□□□ -0.41
LIG1-218ENST00000599322 B3GALT5Q9Y2C3 310 aa12.49□□□□□ -0.41
LIG1-218ENST00000599322 CORINQ9Y5Q5 1042 aa12.49□□□□□ -0.41
LIG1-218ENST00000599322 ABCA4P78363 2273 aa12.49□□□□□ -0.41
LIG1-218ENST00000599322 ZNF587BE7ETH6 402 aa12.48□□□□□ -0.41
LIG1-218ENST00000599322 FBP2O00757 339 aa12.48□□□□□ -0.41
LIG1-218ENST00000599322 RAMP1O60894 148 aa12.48□□□□□ -0.41
LIG1-218ENST00000599322 TMCC2O75069 709 aa12.48□□□□□ -0.41
LIG1-218ENST00000599322 NPIPB7O75200 414 aa12.48□□□□□ -0.41
LIG1-218ENST00000599322 OR6A2O95222 327 aa12.48□□□□□ -0.41
LIG1-218ENST00000599322 WNT11O96014 354 aa12.48□□□□□ -0.41
LIG1-218ENST00000599322 OPN1SWP03999 348 aa12.48□□□□□ -0.41
LIG1-218ENST00000599322 CD99P14209 185 aa12.48□□□□□ -0.41
LIG1-218ENST00000599322 CD53P19397 219 aa12.48□□□□□ -0.41
LIG1-218ENST00000599322 CD247P20963 164 aa12.48□□□□□ -0.41
LIG1-218ENST00000599322 PAX7P23759 505 aa12.48□□□□□ -0.41
LIG1-218ENST00000599322 MPGP29372 298 aa12.48□□□□□ -0.41
LIG1-218ENST00000599322 PCBP3P57721 371 aaKnown RBP12.48□□□□□ -0.41
LIG1-218ENST00000599322 DMTNQ08495 405 aa12.48□□□□□ -0.41
LIG1-218ENST00000599322 VEZF1Q14119 521 aa12.48□□□□□ -0.41
LIG1-218ENST00000599322 SELPLGQ14242 412 aa12.48□□□□□ -0.41
LIG1-218ENST00000599322 GLIPR1L2Q4G1C9 344 aa12.48□□□□□ -0.41
LIG1-218ENST00000599322 NCMAPQ5T1S8 102 aa12.48□□□□□ -0.41
LIG1-218ENST00000599322 SHEQ5VZ18 495 aa12.48□□□□□ -0.41
LIG1-218ENST00000599322 TTC33Q6PID6 262 aaPredicted RBP12.48□□□□□ -0.41
LIG1-218ENST00000599322 TMEM108Q6UXF1 575 aa12.48□□□□□ -0.41
LIG1-218ENST00000599322 H1FNTQ75WM6 255 aaPredicted RBP12.48□□□□□ -0.41
LIG1-218ENST00000599322 CPLX4Q7Z7G2 160 aa12.48□□□□□ -0.41
LIG1-218ENST00000599322 C1orf162Q8NEQ5 155 aaPredicted RBP12.48□□□□□ -0.41
LIG1-218ENST00000599322 OR6S1Q8NH40 331 aa12.48□□□□□ -0.41
LIG1-218ENST00000599322 VANGL1Q8TAA9 524 aaPredicted RBP12.48□□□□□ -0.41
LIG1-218ENST00000599322 KTI12Q96EK9 354 aaPredicted RBP12.48□□□□□ -0.41
LIG1-218ENST00000599322 OXGR1Q96P68 337 aa12.48□□□□□ -0.41
LIG1-218ENST00000599322 ARHGDIGQ99819 225 aa12.48□□□□□ -0.41
LIG1-218ENST00000599322 EFCAB1Q9HAE3 211 aa12.48□□□□□ -0.41
LIG1-218ENST00000599322 AMDHD2Q9Y303 409 aa12.48□□□□□ -0.41
LIG1-218ENST00000599322 MAP1AP78559 2803 aaPredicted RBP12.47□□□□□ -0.41
LIG1-218ENST00000599322 A0A087WUJ7 227 aa12.47□□□□□ -0.41
LIG1-218ENST00000599322 HS3ST1O14792 307 aa12.47□□□□□ -0.41
LIG1-218ENST00000599322 SIAH2O43255 324 aa12.47□□□□□ -0.41
LIG1-218ENST00000599322 SLC43A1O75387 559 aa12.47□□□□□ -0.41
LIG1-218ENST00000599322 HIST1H2ABP04908 130 aa12.47□□□□□ -0.41
LIG1-218ENST00000599322 HTR2AP28223 471 aa12.47□□□□□ -0.41
LIG1-218ENST00000599322 PRPS1P60891 318 aa12.47□□□□□ -0.41
LIG1-218ENST00000599322 NKX6-1P78426 367 aaPredicted RBP12.47□□□□□ -0.41
LIG1-218ENST00000599322 PMS2P3Q13401 168 aa12.47□□□□□ -0.41
LIG1-218ENST00000599322 DUSP7Q16829 419 aa12.47□□□□□ -0.41
LIG1-218ENST00000599322 KRTAP21-3Q3LHN1 58 aa12.47□□□□□ -0.41
LIG1-218ENST00000599322 RABL3Q5HYI8 236 aa12.47□□□□□ -0.41
LIG1-218ENST00000599322 TSPO2Q5TGU0 170 aa12.47□□□□□ -0.41
LIG1-218ENST00000599322 CGB2Q6NT52 195 aa12.47□□□□□ -0.41
LIG1-218ENST00000599322 HMBOX1Q6NT76 420 aa12.47□□□□□ -0.41
LIG1-218ENST00000599322 NIPAL3Q6P499 406 aa12.47□□□□□ -0.41
LIG1-218ENST00000599322 C22orf34Q6ZV56 151 aa12.47□□□□□ -0.41
LIG1-218ENST00000599322 CREB3L2Q70SY1 520 aa12.47□□□□□ -0.41
LIG1-218ENST00000599322 CCDC80Q76M96 950 aa12.47□□□□□ -0.41
LIG1-218ENST00000599322 HIST3H2AQ7L7L0 130 aa12.47□□□□□ -0.41
LIG1-218ENST00000599322 SPATA21Q7Z572 469 aa12.47□□□□□ -0.41
LIG1-218ENST00000599322 TGIF2LYQ8IUE0 185 aa12.47□□□□□ -0.41
LIG1-218ENST00000599322 C17orf78Q8N4C9 275 aa12.47□□□□□ -0.41
LIG1-218ENST00000599322 ZNF611Q8N823 705 aa12.47□□□□□ -0.41
LIG1-218ENST00000599322 OR52N5Q8NH56 324 aa12.47□□□□□ -0.41
LIG1-218ENST00000599322 LZICQ8WZA0 190 aa12.47□□□□□ -0.41
LIG1-218ENST00000599322 AKAP1Q92667 903 aaKnown RBP eCLIP12.47□□□□□ -0.41
LIG1-218ENST00000599322 HIST1H2ACQ93077 130 aa12.47□□□□□ -0.41
LIG1-218ENST00000599322 FBXW5Q969U6 566 aa12.47□□□□□ -0.41
LIG1-218ENST00000599322 HS3ST6Q96QI5 342 aa12.47□□□□□ -0.41
LIG1-218ENST00000599322 HOPXQ9BPY8 73 aaPredicted RBP12.47□□□□□ -0.41
LIG1-218ENST00000599322 TMEM43Q9BTV4 400 aa12.47□□□□□ -0.41
LIG1-218ENST00000599322 TMUB1Q9BVT8 246 aa12.47□□□□□ -0.41
LIG1-218ENST00000599322 SLC7A10Q9NS82 523 aa12.47□□□□□ -0.41
LIG1-218ENST00000599322 FAIMQ9NVQ4 179 aa12.47□□□□□ -0.41
LIG1-218ENST00000599322 POU2F3Q9UKI9 436 aa12.47□□□□□ -0.41
LIG1-218ENST00000599322 A0A0B4J2E0 115 aa12.46□□□□□ -0.41
LIG1-218ENST00000599322 A0A1B0GX12 115 aa12.46□□□□□ -0.41
LIG1-218ENST00000599322 TRAPPC13A5PLN9 417 aa12.46□□□□□ -0.41
LIG1-218ENST00000599322 M0R3H8 397 aa12.46□□□□□ -0.41
LIG1-218ENST00000599322 GSTA4O15217 222 aa12.46□□□□□ -0.41
LIG1-218ENST00000599322 CHP2O43745 196 aa12.46□□□□□ -0.41
LIG1-218ENST00000599322 CDH2P19022 906 aaPredicted RBP12.46□□□□□ -0.41
LIG1-218ENST00000599322 CBLP22681 906 aa12.46□□□□□ -0.41
LIG1-218ENST00000599322 PTAFRP25105 342 aa12.46□□□□□ -0.41
LIG1-218ENST00000599322 GRPRP30550 384 aa12.46□□□□□ -0.41
LIG1-218ENST00000599322 CDH12P55289 794 aa12.46□□□□□ -0.41
LIG1-218ENST00000599322 UBE2NP61088 152 aaKnown RBP12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms