RNA–Protein interactions for RNA: ENST00000593706.3

PNKP-202, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 849 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-202ENST00000593706 PDLIM4P50479 330 aa12.89□□□□□ -0.35
PNKP-202ENST00000593706 ATP4BP51164 291 aa12.89□□□□□ -0.35
PNKP-202ENST00000593706 POLR2HP52434 150 aaKnown RBP12.89□□□□□ -0.35
PNKP-202ENST00000593706 LRIF1Q5T3J3 769 aa12.89□□□□□ -0.35
PNKP-202ENST00000593706 TSPO2Q5TGU0 170 aa12.89□□□□□ -0.35
PNKP-202ENST00000593706 FAM166AQ6J272 317 aa12.89□□□□□ -0.35
PNKP-202ENST00000593706 IL17RELQ6ZVW7 336 aa12.89□□□□□ -0.35
PNKP-202ENST00000593706 ARIH2OSQ8N7S6 290 aa12.89□□□□□ -0.35
PNKP-202ENST00000593706 WDR31Q8NA23 367 aa12.89□□□□□ -0.35
PNKP-202ENST00000593706 SLC38A5Q8WUX1 472 aa12.89□□□□□ -0.35
PNKP-202ENST00000593706 C3orf49Q96BT1 292 aa12.89□□□□□ -0.35
PNKP-202ENST00000593706 MAGEB18Q96M61 343 aa12.89□□□□□ -0.35
PNKP-202ENST00000593706 KCNS3Q9BQ31 491 aa12.89□□□□□ -0.35
PNKP-202ENST00000593706 MTHFD2LQ9H903 347 aaPredicted RBP12.89□□□□□ -0.35
PNKP-202ENST00000593706 TMEM45AQ9NWC5 275 aa12.89□□□□□ -0.35
PNKP-202ENST00000593706 MOKQ9UQ07 419 aa12.89□□□□□ -0.35
PNKP-202ENST00000593706 PCDHB14Q9Y5E9 798 aa12.89□□□□□ -0.35
PNKP-202ENST00000593706 A0A096LPI6 279 aa12.88□□□□□ -0.35
PNKP-202ENST00000593706 PDLIM1O00151 329 aa12.88□□□□□ -0.35
PNKP-202ENST00000593706 KRT33AO76009 404 aa12.88□□□□□ -0.35
PNKP-202ENST00000593706 NR2F1P10589 423 aa12.88□□□□□ -0.35
PNKP-202ENST00000593706 IGFBP5P24593 272 aa12.88□□□□□ -0.35
PNKP-202ENST00000593706 MPGP29372 298 aa12.88□□□□□ -0.35
PNKP-202ENST00000593706 PRPS1P60891 318 aa12.88□□□□□ -0.35
PNKP-202ENST00000593706 H3F3AP84243 136 aa12.88□□□□□ -0.35
PNKP-202ENST00000593706 C6orf10Q5SRN2 563 aa12.88□□□□□ -0.35
PNKP-202ENST00000593706 OTUD3Q5T2D3 398 aaPredicted RBP12.88□□□□□ -0.35
PNKP-202ENST00000593706 MRPL2Q5T653 305 aaKnown RBP12.88□□□□□ -0.35
PNKP-202ENST00000593706 SLC46A3Q7Z3Q1 461 aa12.88□□□□□ -0.35
PNKP-202ENST00000593706 LSRQ86X29 649 aaPredicted RBP12.88□□□□□ -0.35
PNKP-202ENST00000593706 C10orf111Q8N326 155 aa12.88□□□□□ -0.35
PNKP-202ENST00000593706 GOLGA6L1Q8N7Z2 621 aa12.88□□□□□ -0.35
PNKP-202ENST00000593706 DYDC1Q8WWB3 177 aa12.88□□□□□ -0.35
PNKP-202ENST00000593706 SLAMF8Q9P0V8 285 aa12.88□□□□□ -0.35
PNKP-202ENST00000593706 P2RX2Q9UBL9 471 aa12.88□□□□□ -0.35
PNKP-202ENST00000593706 CHST2Q9Y4C5 530 aa12.88□□□□□ -0.35
PNKP-202ENST00000593706 LOC100289279A0A1B0GTE1 492 aa12.87□□□□□ -0.35
PNKP-202ENST00000593706 TMEM72A0PK05 275 aa12.87□□□□□ -0.35
PNKP-202ENST00000593706 CDHR4A6H8M9 788 aa12.87□□□□□ -0.35
PNKP-202ENST00000593706 NDUFS8O00217 210 aa12.87□□□□□ -0.35
PNKP-202ENST00000593706 ZNF208O43345 1280 aa12.87□□□□□ -0.35
PNKP-202ENST00000593706 EDF1O60869 148 aaKnown RBP12.87□□□□□ -0.35
PNKP-202ENST00000593706 DBIP07108 87 aaKnown RBP12.87□□□□□ -0.35
PNKP-202ENST00000593706 C8BP07358 591 aa12.87□□□□□ -0.35
PNKP-202ENST00000593706 NUDT7P0C024 238 aa12.87□□□□□ -0.35
PNKP-202ENST00000593706 IMPDH2P12268 514 aa12.87□□□□□ -0.35
PNKP-202ENST00000593706 APEHP13798 732 aaKnown RBP12.87□□□□□ -0.35
PNKP-202ENST00000593706 TACR3P29371 465 aa12.87□□□□□ -0.35
PNKP-202ENST00000593706 DSTNP60981 165 aa12.87□□□□□ -0.35
PNKP-202ENST00000593706 STX1BP61266 288 aa12.87□□□□□ -0.35
PNKP-202ENST00000593706 GNA13Q14344 377 aa12.87□□□□□ -0.35
PNKP-202ENST00000593706 SLC17A1Q14916 467 aa12.87□□□□□ -0.35
PNKP-202ENST00000593706 RGNQ15493 299 aa12.87□□□□□ -0.35
PNKP-202ENST00000593706 PAGE3Q5JUK9 113 aa12.87□□□□□ -0.35
PNKP-202ENST00000593706 C1QTNF12Q5T7M4 302 aa12.87□□□□□ -0.35
PNKP-202ENST00000593706 RNF220Q5VTB9 566 aa12.87□□□□□ -0.35
PNKP-202ENST00000593706 PAQR6Q6TCH4 344 aa12.87□□□□□ -0.35
PNKP-202ENST00000593706 ABHD12BQ7Z5M8 362 aaPredicted RBP12.87□□□□□ -0.35
PNKP-202ENST00000593706 GPAT4Q86UL3 456 aa12.87□□□□□ -0.35
PNKP-202ENST00000593706 WDR60Q8WVS4 1066 aa12.87□□□□□ -0.35
PNKP-202ENST00000593706 SPDL1Q96EA4 605 aa12.87□□□□□ -0.35
PNKP-202ENST00000593706 SORCS2Q96PQ0 1159 aa12.87□□□□□ -0.35
PNKP-202ENST00000593706 VRK1Q99986 396 aaPredicted RBP12.87□□□□□ -0.35
PNKP-202ENST00000593706 C19orf24Q9BVV8 132 aa12.87□□□□□ -0.35
PNKP-202ENST00000593706 RSPO3Q9BXY4 272 aaPredicted RBP12.87□□□□□ -0.35
PNKP-202ENST00000593706 A4GALTQ9NPC4 353 aa12.87□□□□□ -0.35
PNKP-202ENST00000593706 OSGIN1Q9UJX0 560 aa12.87□□□□□ -0.35
PNKP-202ENST00000593706 ZC3H12DA2A288 527 aaKnown RBP12.86□□□□□ -0.35
PNKP-202ENST00000593706 CLIC1O00299 241 aa12.86□□□□□ -0.35
PNKP-202ENST00000593706 NR5A2O00482 541 aa12.86□□□□□ -0.35
PNKP-202ENST00000593706 ANP32DO95626 131 aa12.86□□□□□ -0.35
PNKP-202ENST00000593706 BCHEP06276 602 aa12.86□□□□□ -0.35
PNKP-202ENST00000593706 GPIP06744 558 aa12.86□□□□□ -0.35
PNKP-202ENST00000593706 IL7RP16871 459 aa12.86□□□□□ -0.35
PNKP-202ENST00000593706 SLC1A3P43003 542 aa12.86□□□□□ -0.35
PNKP-202ENST00000593706 CRATP43155 626 aa12.86□□□□□ -0.35
PNKP-202ENST00000593706 NR4A2P43354 598 aa12.86□□□□□ -0.35
PNKP-202ENST00000593706 EPS8Q12929 822 aa12.86□□□□□ -0.35
PNKP-202ENST00000593706 FADDQ13158 208 aa12.86□□□□□ -0.35
PNKP-202ENST00000593706 SQLEQ14534 574 aa12.86□□□□□ -0.35
PNKP-202ENST00000593706 OR7A5Q15622 319 aa12.86□□□□□ -0.35
PNKP-202ENST00000593706 IQCCQ4KMZ1 466 aa12.86□□□□□ -0.35
PNKP-202ENST00000593706 HIKESHIQ53FT3 197 aa12.86□□□□□ -0.35
PNKP-202ENST00000593706 RPS26P11Q5JNZ5 115 aaPredicted RBP12.86□□□□□ -0.35
PNKP-202ENST00000593706 FAM120AOSQ5T036 256 aa12.86□□□□□ -0.35
PNKP-202ENST00000593706 ZNF836Q6ZNA1 936 aa12.86□□□□□ -0.35
PNKP-202ENST00000593706 AAED1Q7RTV5 226 aa12.86□□□□□ -0.35
PNKP-202ENST00000593706 VRK2Q86Y07 508 aa12.86□□□□□ -0.35
PNKP-202ENST00000593706 POMGNT2Q8NAT1 580 aa12.86□□□□□ -0.35
PNKP-202ENST00000593706 OR9K2Q8NGE7 335 aa12.86□□□□□ -0.35
PNKP-202ENST00000593706 TMEM45BQ96B21 275 aa12.86□□□□□ -0.35
PNKP-202ENST00000593706 TMEM19Q96HH6 336 aa12.86□□□□□ -0.35
PNKP-202ENST00000593706 IKZF5Q9H5V7 419 aa12.86□□□□□ -0.35
PNKP-202ENST00000593706 BCL2L10Q9HD36 194 aa12.86□□□□□ -0.35
PNKP-202ENST00000593706 RLIMQ9NVW2 624 aa12.86□□□□□ -0.35
PNKP-202ENST00000593706 THUMPD1Q9NXG2 353 aaKnown RBP12.86□□□□□ -0.35
PNKP-202ENST00000593706 CALML5Q9NZT1 146 aa12.86□□□□□ -0.35
PNKP-202ENST00000593706 CCDC167Q9P0B6 97 aa12.86□□□□□ -0.35
PNKP-202ENST00000593706 CFAP73A6NFT4 308 aa12.85□□□□□ -0.35
PNKP-202ENST00000593706 AKR7A3O95154 331 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms