RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 ABOP16442 354 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 GSTM3P21266 225 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 TACR2P21452 398 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 KELP23276 732 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 APEX1P27695 318 aaKnown RBP3.8□□□□□ -1.8
LIG3-211ENST00000588713 AOAHP28039 575 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 OR1E1P30953 314 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 LCN1P31025 176 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 SSTR4P31391 388 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 TIA1P31483 386 aaKnown RBP eCLIP3.8□□□□□ -1.8
LIG3-211ENST00000588713 ACVRL1P37023 503 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 CAPZA2P47755 286 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 RFX3P48380 749 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 TGM4P49221 684 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 AGFG1P52594 562 aaKnown RBP3.8□□□□□ -1.8
LIG3-211ENST00000588713 MVDP53602 400 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 CDH4P55283 916 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 AP1S1P61966 158 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 ARG2P78540 354 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 CDK6Q00534 326 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 PMP22Q01453 160 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 MXD1Q05195 221 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 EEF1A2Q05639 463 aaKnown RBP3.8□□□□□ -1.8
LIG3-211ENST00000588713 PUDPQ08623 228 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 ACSM2AQ08AH3 577 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 DBPQ10586 325 aaPredicted RBP3.8□□□□□ -1.8
LIG3-211ENST00000588713 ILF3Q12906 894 aaKnown RBP eCLIP3.8□□□□□ -1.8
LIG3-211ENST00000588713 PDE7AQ13946 482 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 POU4F3Q15319 338 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 P2RY14Q15391 338 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 SEC23BQ15437 767 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 TRAM1Q15629 374 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 TSC22D1Q15714 1073 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 SNAPC1Q16533 368 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 CPSF6Q16630 551 aaKnown RBP eCLIP3.8□□□□□ -1.8
LIG3-211ENST00000588713 FAM214AQ32MH5 1076 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 PTCHD3Q3KNS1 767 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 GPR33Q49SQ1 333 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 SYT14P1Q58G82 188 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 CLVS2Q5SYC1 327 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 GPRC6AQ5T6X5 926 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 CPTPQ5TA50 214 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 ACSM2BQ68CK6 577 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 GRHL2Q6ISB3 625 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 LCN10Q6JVE6 187 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 PGBD2Q6P3X8 592 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 FAM198BQ6UWH4 519 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 SEZ6L2Q6UXD5 910 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 WASH2PQ6VEQ5 465 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 ZNF783Q6ZMS7 281 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 BTN2A1Q7KYR7 527 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 C16orf62Q7Z3J2 963 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 GLCCI1Q86VQ1 547 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 SERPINA9Q86WD7 417 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 CXorf67Q86X51 503 aaPredicted RBP3.8□□□□□ -1.8
LIG3-211ENST00000588713 CIR1Q86X95 450 aaPredicted RBP3.8□□□□□ -1.8
LIG3-211ENST00000588713 CMIPQ8IY22 773 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 TIGD4Q8IY51 512 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 SYT14Q8NB59 555 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 CLRN3Q8NCR9 226 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 OR8D4Q8NGM9 314 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 OR52P1PQ8NH57 321 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 NFKBIDQ8NI38 313 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 NEIL3Q8TAT5 605 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 WDR20Q8TBZ3 569 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 ASB13Q8WXK3 278 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 ASB12Q8WXK4 309 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 SLC9A6Q92581 669 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 FBXW5Q969U6 566 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 C11orf24Q96F05 449 aaPredicted RBP3.8□□□□□ -1.8
LIG3-211ENST00000588713 MEGF10Q96KG7 1140 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 TGM7Q96PF1 710 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 SLC38A2Q96QD8 506 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 OR4K3Q96R72 315 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 COPS8Q99627 209 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 MAP3K3Q99759 626 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 SLC35A5Q9BS91 424 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 FUZQ9BT04 418 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 WRAP53Q9BUR4 548 aaKnown RBP3.8□□□□□ -1.8
LIG3-211ENST00000588713 ZNF416Q9BWM5 594 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 EBPLQ9BY08 206 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 GSDMCQ9BYG8 508 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 SLC7A5P2Q9GIP4 190 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 SHARPINQ9H0F6 387 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 OR51J1Q9H342 316 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 FN3KQ9H479 309 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 IFT22Q9H7X7 185 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 SCPEP1Q9HB40 452 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 A4GALTQ9NPC4 353 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 WASH6PQ9NQA3 447 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 CYSLTR2Q9NS75 346 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 NUDT15Q9NV35 164 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 SDHAF2Q9NX18 166 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 ARL15Q9NXU5 204 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 PTGFRNQ9P2B2 879 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 EXTL2Q9UBQ6 330 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 CLEC2DQ9UHP7 191 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 PFDN2Q9UHV9 154 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 ZNF222Q9UK12 451 aa3.8□□□□□ -1.8
LIG3-211ENST00000588713 POMT2Q9UKY4 750 aa3.8□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms