RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 TAAR8Q969N4 342 aa15.52■□□□□ 0.08
HDDC3-205ENST00000559898 ALKBH3Q96Q83 286 aaPredicted RBP15.52■□□□□ 0.08
HDDC3-205ENST00000559898 USB1Q9BQ65 265 aaKnown RBP15.52■□□□□ 0.08
HDDC3-205ENST00000559898 SEC61A2Q9H9S3 476 aa15.52■□□□□ 0.08
HDDC3-205ENST00000559898 B3GAT1Q9P2W7 334 aa15.52■□□□□ 0.08
HDDC3-205ENST00000559898 DCTN4Q9UJW0 460 aa15.52■□□□□ 0.08
HDDC3-205ENST00000559898 C5orf58C9J3I9 102 aa15.51■□□□□ 0.07
HDDC3-205ENST00000559898 MPGP29372 298 aa15.51■□□□□ 0.07
HDDC3-205ENST00000559898 MAP2K6P52564 334 aa15.51■□□□□ 0.07
HDDC3-205ENST00000559898 DMTNQ08495 405 aa15.51■□□□□ 0.07
HDDC3-205ENST00000559898 SF3A3Q12874 501 aaKnown RBP eCLIP15.51■□□□□ 0.07
HDDC3-205ENST00000559898 RUNDC3AQ59EK9 446 aa15.51■□□□□ 0.07
HDDC3-205ENST00000559898 PRAMEF8Q5VWM4 474 aa15.51■□□□□ 0.07
HDDC3-205ENST00000559898 PRAMEF7Q5VXH5 474 aa15.51■□□□□ 0.07
HDDC3-205ENST00000559898 TMEM225Q6GV28 225 aa15.51■□□□□ 0.07
HDDC3-205ENST00000559898 NIPAL3Q6P499 406 aa15.51■□□□□ 0.07
HDDC3-205ENST00000559898 SLC22A25Q6T423 547 aa15.51■□□□□ 0.07
HDDC3-205ENST00000559898 DNM1P46Q6ZS02 220 aa15.51■□□□□ 0.07
HDDC3-205ENST00000559898 PTOV1Q86YD1 416 aa15.51■□□□□ 0.07
HDDC3-205ENST00000559898 ZNF837Q96EG3 531 aaPredicted RBP15.51■□□□□ 0.07
HDDC3-205ENST00000559898 SF3B5Q9BWJ5 86 aaKnown RBP15.51■□□□□ 0.07
HDDC3-205ENST00000559898 TAPBPLQ9BX59 468 aa15.51■□□□□ 0.07
HDDC3-205ENST00000559898 NELFAQ9H3P2 528 aa15.51■□□□□ 0.07
HDDC3-205ENST00000559898 INTS9Q9NV88 658 aaKnown RBP15.51■□□□□ 0.07
HDDC3-205ENST00000559898 THUMPD1Q9NXG2 353 aaKnown RBP15.51■□□□□ 0.07
HDDC3-205ENST00000559898 NIPSNAP3AQ9UFN0 247 aaPredicted RBP15.51■□□□□ 0.07
HDDC3-205ENST00000559898 TMEM247A6NEH6 219 aa15.5■□□□□ 0.07
HDDC3-205ENST00000559898 LRRN3E7EW58 273 aa15.5■□□□□ 0.07
HDDC3-205ENST00000559898 ATP6V1G2-DDX39BF2Z307 99 aa15.5■□□□□ 0.07
HDDC3-205ENST00000559898 OPN1SWP03999 348 aa15.5■□□□□ 0.07
HDDC3-205ENST00000559898 ETS2P15036 469 aa15.5■□□□□ 0.07
HDDC3-205ENST00000559898 GPX2P18283 190 aa15.5■□□□□ 0.07
HDDC3-205ENST00000559898 ATP4BP51164 291 aa15.5■□□□□ 0.07
HDDC3-205ENST00000559898 SCARB2Q14108 478 aa15.5■□□□□ 0.07
HDDC3-205ENST00000559898 SQLEQ14534 574 aa15.5■□□□□ 0.07
HDDC3-205ENST00000559898 PHYHD1Q5SRE7 291 aa15.5■□□□□ 0.07
HDDC3-205ENST00000559898 REEP3Q6NUK4 255 aa15.5■□□□□ 0.07
HDDC3-205ENST00000559898 DHRS4L2Q6PKH6 230 aa15.5■□□□□ 0.07
HDDC3-205ENST00000559898 TMEM108Q6UXF1 575 aa15.5■□□□□ 0.07
HDDC3-205ENST00000559898 MYPOPQ86VE0 399 aaPredicted RBP15.5■□□□□ 0.07
HDDC3-205ENST00000559898 STK35Q8TDR2 534 aa15.5■□□□□ 0.07
HDDC3-205ENST00000559898 CACNG6Q9BXT2 260 aa15.5■□□□□ 0.07
HDDC3-205ENST00000559898 RAD21L1Q9H4I0 556 aa15.5■□□□□ 0.07
HDDC3-205ENST00000559898 PARPBPQ9NWS1 579 aa15.5■□□□□ 0.07
HDDC3-205ENST00000559898 ADAM21Q9UKJ8 722 aa15.5■□□□□ 0.07
HDDC3-205ENST00000559898 A0A096LPE4 126 aa15.49■□□□□ 0.07
HDDC3-205ENST00000559898 A0A1W2PPZ6 126 aa15.49■□□□□ 0.07
HDDC3-205ENST00000559898 ZNF503-AS2A6NEH8 195 aa15.49■□□□□ 0.07
HDDC3-205ENST00000559898 ELOA3DA6NLF2 546 aaPredicted RBP15.49■□□□□ 0.07
HDDC3-205ENST00000559898 KIAA1324LA8MWY0 1029 aaPredicted RBP15.49■□□□□ 0.07
HDDC3-205ENST00000559898 M0R082 166 aa15.49■□□□□ 0.07
HDDC3-205ENST00000559898 LY6HO94772 140 aa15.49■□□□□ 0.07
HDDC3-205ENST00000559898 AHSA1O95433 338 aa15.49■□□□□ 0.07
HDDC3-205ENST00000559898 HPRP00739 348 aa15.49■□□□□ 0.07
HDDC3-205ENST00000559898 HLA-DOBP13765 273 aa15.49■□□□□ 0.07
HDDC3-205ENST00000559898 H2AFXP16104 143 aaPredicted RBP15.49■□□□□ 0.07
HDDC3-205ENST00000559898 PTAFRP25105 342 aa15.49■□□□□ 0.07
HDDC3-205ENST00000559898 PRKAR1BP31321 381 aa15.49■□□□□ 0.07
HDDC3-205ENST00000559898 TTKP33981 857 aa15.49■□□□□ 0.07
HDDC3-205ENST00000559898 CLDN17P56750 224 aa15.49■□□□□ 0.07
HDDC3-205ENST00000559898 MTPNP58546 118 aa15.49■□□□□ 0.07
HDDC3-205ENST00000559898 ELOA3BQ3SY89 546 aa15.49■□□□□ 0.07
HDDC3-205ENST00000559898 OR7E24Q6IFN5 339 aa15.49■□□□□ 0.07
HDDC3-205ENST00000559898 C6orf89Q6UWU4 347 aa15.49■□□□□ 0.07
HDDC3-205ENST00000559898 TSPYL5Q86VY4 417 aaPredicted RBP15.49■□□□□ 0.07
HDDC3-205ENST00000559898 SMYD1Q8NB12 490 aa15.49■□□□□ 0.07
HDDC3-205ENST00000559898 ELOA3Q8NG57 546 aa15.49■□□□□ 0.07
HDDC3-205ENST00000559898 OR4D11Q8NGI4 311 aa15.49■□□□□ 0.07
HDDC3-205ENST00000559898 OR1K1Q8NGR3 316 aa15.49■□□□□ 0.07
HDDC3-205ENST00000559898 MFSD8Q8NHS3 518 aa15.49■□□□□ 0.07
HDDC3-205ENST00000559898 ZNF417Q8TAU3 575 aa15.49■□□□□ 0.07
HDDC3-205ENST00000559898 ZNF587Q96SQ5 575 aaPredicted RBP15.49■□□□□ 0.07
HDDC3-205ENST00000559898 DHRS9Q9BPW9 319 aa15.49■□□□□ 0.07
HDDC3-205ENST00000559898 REG4Q9BYZ8 158 aa15.49■□□□□ 0.07
HDDC3-205ENST00000559898 NPHS2Q9NP85 383 aa15.49■□□□□ 0.07
HDDC3-205ENST00000559898 POU2F3Q9UKI9 436 aa15.49■□□□□ 0.07
HDDC3-205ENST00000559898 MOKQ9UQ07 419 aa15.49■□□□□ 0.07
HDDC3-205ENST00000559898 GMEB1Q9Y692 573 aa15.49■□□□□ 0.07
HDDC3-205ENST00000559898 ATP23Q9Y6H3 246 aa15.49■□□□□ 0.07
HDDC3-205ENST00000559898 YLPM1P49750 1951 aaKnown RBP15.49■□□□□ 0.07
HDDC3-205ENST00000559898 ARFGEF3Q5TH69 2177 aa15.48■□□□□ 0.07
HDDC3-205ENST00000559898 IGHV4-30-2A0A087WSY4 118 aa15.48■□□□□ 0.07
HDDC3-205ENST00000559898 IGHV1-18A0A0C4DH31 117 aa15.48■□□□□ 0.07
HDDC3-205ENST00000559898 M0R3H8 397 aa15.48■□□□□ 0.07
HDDC3-205ENST00000559898 SSX4O60224 188 aa15.48■□□□□ 0.07
HDDC3-205ENST00000559898 TMCC2O75069 709 aa15.48■□□□□ 0.07
HDDC3-205ENST00000559898 FZD7O75084 574 aa15.48■□□□□ 0.07
HDDC3-205ENST00000559898 ZNF432O94892 652 aa15.48■□□□□ 0.07
HDDC3-205ENST00000559898 GRPRP30550 384 aa15.48■□□□□ 0.07
HDDC3-205ENST00000559898 FABP6P51161 128 aa15.48■□□□□ 0.07
HDDC3-205ENST00000559898 NPTX1Q15818 432 aa15.48■□□□□ 0.07
HDDC3-205ENST00000559898 TBRG1Q3YBR2 411 aa15.48■□□□□ 0.07
HDDC3-205ENST00000559898 KLHL17Q6TDP4 642 aa15.48■□□□□ 0.07
HDDC3-205ENST00000559898 RBM45Q8IUH3 476 aaKnown RBP15.48■□□□□ 0.07
HDDC3-205ENST00000559898 GPR32P1Q8NGA4 272 aa15.48■□□□□ 0.07
HDDC3-205ENST00000559898 BCL2L2Q92843 193 aaPredicted RBP15.48■□□□□ 0.07
HDDC3-205ENST00000559898 TRMT61AQ96FX7 289 aaKnown RBP15.48■□□□□ 0.07
HDDC3-205ENST00000559898 RADILQ96JH8 1075 aa15.48■□□□□ 0.07
HDDC3-205ENST00000559898 MAGEB18Q96M61 343 aa15.48■□□□□ 0.07
HDDC3-205ENST00000559898 KLHL14Q9P2G3 628 aa15.48■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms