RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 ZNF74Q16587 644 aa9□□□□□ -0.97
USP3-216ENST00000559873 ANKDD1AQ495B1 522 aa9□□□□□ -0.97
USP3-216ENST00000559873 TMEM225Q6GV28 225 aa9□□□□□ -0.97
USP3-216ENST00000559873 OR2T5Q6IEZ7 315 aa9□□□□□ -0.97
USP3-216ENST00000559873 ZFP1Q6P2D0 407 aa9□□□□□ -0.97
USP3-216ENST00000559873 SEM1Q6ZVN7 128 aa9□□□□□ -0.97
USP3-216ENST00000559873 FAM214BQ7L5A3 538 aa9□□□□□ -0.97
USP3-216ENST00000559873 HIST3H2AQ7L7L0 130 aa9□□□□□ -0.97
USP3-216ENST00000559873 STK32CQ86UX6 486 aa9□□□□□ -0.97
USP3-216ENST00000559873 P3H2Q8IVL5 708 aa9□□□□□ -0.97
USP3-216ENST00000559873 NRMQ8IXM6 262 aa9□□□□□ -0.97
USP3-216ENST00000559873 GCNT2Q8N0V5 402 aa9□□□□□ -0.97
USP3-216ENST00000559873 CNEP1R1Q8N9A8 125 aa9□□□□□ -0.97
USP3-216ENST00000559873 OR6K3Q8NGY3 331 aa9□□□□□ -0.97
USP3-216ENST00000559873 OR2T29Q8NH02 315 aa9□□□□□ -0.97
USP3-216ENST00000559873 SSC4DQ8WTU2 575 aa9□□□□□ -0.97
USP3-216ENST00000559873 CA5BP1Q8WTZ4 195 aa9□□□□□ -0.97
USP3-216ENST00000559873 ABHD3Q8WU67 409 aa9□□□□□ -0.97
USP3-216ENST00000559873 ROBO4Q8WZ75 1007 aa9□□□□□ -0.97
USP3-216ENST00000559873 HIST1H2ACQ93077 130 aa9□□□□□ -0.97
USP3-216ENST00000559873 TAAR8Q969N4 342 aa9□□□□□ -0.97
USP3-216ENST00000559873 DNAJA3Q96EY1 480 aa9□□□□□ -0.97
USP3-216ENST00000559873 CHID1Q9BWS9 393 aa9□□□□□ -0.97
USP3-216ENST00000559873 CHST11Q9NPF2 352 aa9□□□□□ -0.97
USP3-216ENST00000559873 MAN2C1Q9NTJ4 1040 aa9□□□□□ -0.97
USP3-216ENST00000559873 CCM2LQ9NUG4 571 aaPredicted RBP9□□□□□ -0.97
USP3-216ENST00000559873 MRPL39Q9NYK5 338 aaKnown RBP9□□□□□ -0.97
USP3-216ENST00000559873 Q9UFV3 132 aa9□□□□□ -0.97
USP3-216ENST00000559873 PROCRQ9UNN8 238 aa9□□□□□ -0.97
USP3-216ENST00000559873 RNF6Q9Y252 685 aa9□□□□□ -0.97
USP3-216ENST00000559873 SPTAN1Q13813 2472 aaKnown RBP9□□□□□ -0.97
USP3-216ENST00000559873 PHF3Q92576 2039 aaKnown RBP9□□□□□ -0.97
USP3-216ENST00000559873 USP9XQ93008 2570 aaPredicted RBP9□□□□□ -0.97
USP3-216ENST00000559873 MYO7BQ6PIF6 2116 aa8.99□□□□□ -0.97
USP3-216ENST00000559873 SPTBN1Q01082 2364 aaKnown RBP8.99□□□□□ -0.97
USP3-216ENST00000559873 IGKV3D-15A0A087WSY6 115 aa8.99□□□□□ -0.97
USP3-216ENST00000559873 A0A1W2PNV4 684 aa8.99□□□□□ -0.97
USP3-216ENST00000559873 ERICH4A6NGS2 130 aa8.99□□□□□ -0.97
USP3-216ENST00000559873 EFCAB9A8MZ26 197 aa8.99□□□□□ -0.97
USP3-216ENST00000559873 M0R082 166 aa8.99□□□□□ -0.97
USP3-216ENST00000559873 TNFRSF11BO00300 401 aa8.99□□□□□ -0.97
USP3-216ENST00000559873 OR10H3O60404 316 aa8.99□□□□□ -0.97
USP3-216ENST00000559873 ZG16O60844 167 aa8.99□□□□□ -0.97
USP3-216ENST00000559873 DEAF1O75398 565 aaPredicted RBP8.99□□□□□ -0.97
USP3-216ENST00000559873 E2F6O75461 281 aa8.99□□□□□ -0.97
USP3-216ENST00000559873 OR7A10O76100 309 aa8.99□□□□□ -0.97
USP3-216ENST00000559873 TOXO94900 526 aa8.99□□□□□ -0.97
USP3-216ENST00000559873 AKR7A3O95154 331 aa8.99□□□□□ -0.97
USP3-216ENST00000559873 CH25HO95992 272 aa8.99□□□□□ -0.97
USP3-216ENST00000559873 LDLRP01130 860 aa8.99□□□□□ -0.97
USP3-216ENST00000559873 YES1P07947 543 aa8.99□□□□□ -0.97
USP3-216ENST00000559873 SAGP10523 405 aaPredicted RBP8.99□□□□□ -0.97
USP3-216ENST00000559873 BMP5P22003 454 aa8.99□□□□□ -0.97
USP3-216ENST00000559873 AGTR1P30556 359 aa8.99□□□□□ -0.97
USP3-216ENST00000559873 SLC9A3P48764 834 aa8.99□□□□□ -0.97
USP3-216ENST00000559873 SIRPAP78324 504 aa8.99□□□□□ -0.97
USP3-216ENST00000559873 H3F3AP84243 136 aa8.99□□□□□ -0.97
USP3-216ENST00000559873 PUDPQ08623 228 aa8.99□□□□□ -0.97
USP3-216ENST00000559873 PMS2P3Q13401 168 aa8.99□□□□□ -0.97
USP3-216ENST00000559873 C1DQ13901 141 aaKnown RBP8.99□□□□□ -0.97
USP3-216ENST00000559873 POU4F3Q15319 338 aa8.99□□□□□ -0.97
USP3-216ENST00000559873 IQCCQ4KMZ1 466 aa8.99□□□□□ -0.97
USP3-216ENST00000559873 PODNL1Q6PEZ8 512 aa8.99□□□□□ -0.97
USP3-216ENST00000559873 H1FNTQ75WM6 255 aaPredicted RBP8.99□□□□□ -0.97
USP3-216ENST00000559873 HDDC2Q7Z4H3 204 aa8.99□□□□□ -0.97
USP3-216ENST00000559873 GALNT5Q7Z7M9 940 aa8.99□□□□□ -0.97
USP3-216ENST00000559873 GPAT4Q86UL3 456 aa8.99□□□□□ -0.97
USP3-216ENST00000559873 TMEM99Q8N816 258 aa8.99□□□□□ -0.97
USP3-216ENST00000559873 NAXEQ8NCW5 288 aa8.99□□□□□ -0.97
USP3-216ENST00000559873 OR4K5Q8NGD3 323 aa8.99□□□□□ -0.97
USP3-216ENST00000559873 OR5J2Q8NH18 312 aa8.99□□□□□ -0.97
USP3-216ENST00000559873 OR52J3Q8NH60 311 aa8.99□□□□□ -0.97
USP3-216ENST00000559873 PFN4Q8NHR9 129 aa8.99□□□□□ -0.97
USP3-216ENST00000559873 ZNF417Q8TAU3 575 aa8.99□□□□□ -0.97
USP3-216ENST00000559873 SLC7A13Q8TCU3 470 aa8.99□□□□□ -0.97
USP3-216ENST00000559873 STMN2Q93045 179 aa8.99□□□□□ -0.97
USP3-216ENST00000559873 UTP4Q969X6 686 aaKnown RBP8.99□□□□□ -0.97
USP3-216ENST00000559873 BPIFA2Q96DR5 249 aa8.99□□□□□ -0.97
USP3-216ENST00000559873 ALPK1Q96QP1 1244 aa8.99□□□□□ -0.97
USP3-216ENST00000559873 ZNF587Q96SQ5 575 aaPredicted RBP8.99□□□□□ -0.97
USP3-216ENST00000559873 PSD2Q9BQI7 771 aa8.99□□□□□ -0.97
USP3-216ENST00000559873 BCO1Q9HAY6 547 aa8.99□□□□□ -0.97
USP3-216ENST00000559873 PARPBPQ9NWS1 579 aa8.99□□□□□ -0.97
USP3-216ENST00000559873 DNAJB9Q9UBS3 223 aa8.99□□□□□ -0.97
USP3-216ENST00000559873 SAMHD1Q9Y3Z3 626 aaKnown RBP8.99□□□□□ -0.97
USP3-216ENST00000559873 LYVE1Q9Y5Y7 322 aa8.99□□□□□ -0.97
USP3-216ENST00000559873 PCNX1Q96RV3 2341 aa8.99□□□□□ -0.97
USP3-216ENST00000559873 MPDZO75970 2070 aa8.98□□□□□ -0.97
USP3-216ENST00000559873 RELNP78509 3460 aa8.98□□□□□ -0.97
USP3-216ENST00000559873 A0A087WUU8 490 aa8.98□□□□□ -0.97
USP3-216ENST00000559873 SH3PXD2BA1X283 911 aa8.98□□□□□ -0.97
USP3-216ENST00000559873 ZNF716A6NP11 495 aa8.98□□□□□ -0.97
USP3-216ENST00000559873 KDM4EB2RXH2 506 aaPredicted RBP8.98□□□□□ -0.97
USP3-216ENST00000559873 HNRNPRO43390 633 aaKnown RBP8.98□□□□□ -0.97
USP3-216ENST00000559873 CLDN14O95500 239 aa8.98□□□□□ -0.97
USP3-216ENST00000559873 ADORA3P0DMS8 318 aa8.98□□□□□ -0.97
USP3-216ENST00000559873 ZNF43P17038 809 aa8.98□□□□□ -0.97
USP3-216ENST00000559873 FUT1P19526 365 aa8.98□□□□□ -0.97
USP3-216ENST00000559873 FASP25445 335 aa8.98□□□□□ -0.97
USP3-216ENST00000559873 ERFP50548 548 aa8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms