RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 PRR32B1ATL7 298 aa9.67□□□□□ -0.86
CUX1-217ENST00000558836 ZNF354AO60765 605 aaPredicted RBP9.67□□□□□ -0.86
CUX1-217ENST00000558836 CPNE3O75131 537 aaKnown RBP9.67□□□□□ -0.86
CUX1-217ENST00000558836 RPP14O95059 124 aaKnown RBP9.67□□□□□ -0.86
CUX1-217ENST00000558836 ELK1P19419 428 aa9.67□□□□□ -0.86
CUX1-217ENST00000558836 ABCD3P28288 659 aa9.67□□□□□ -0.86
CUX1-217ENST00000558836 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.67□□□□□ -0.861e-6■□□□□ 9
CUX1-217ENST00000558836 ALG10Q5BKT4 473 aa9.67□□□□□ -0.86
CUX1-217ENST00000558836 XKRXQ6PP77 449 aa9.67□□□□□ -0.86
CUX1-217ENST00000558836 SLC35F2Q8IXU6 374 aa9.67□□□□□ -0.86
CUX1-217ENST00000558836 SLC41A2Q96JW4 573 aa9.67□□□□□ -0.86
CUX1-217ENST00000558836 OR1F2PQ96R84 312 aa9.67□□□□□ -0.86
CUX1-217ENST00000558836 CNN2Q99439 309 aaKnown RBP9.67□□□□□ -0.86
CUX1-217ENST00000558836 LPAR4Q99677 370 aa9.67□□□□□ -0.86
CUX1-217ENST00000558836 JAM3Q9BX67 310 aa9.67□□□□□ -0.86
CUX1-217ENST00000558836 MMP25Q9NPA2 562 aa9.67□□□□□ -0.86
CUX1-217ENST00000558836 ING1Q9UK53 422 aaPredicted RBP9.67□□□□□ -0.86
CUX1-217ENST00000558836 RASD1Q9Y272 281 aa9.67□□□□□ -0.86
CUX1-217ENST00000558836 ANKRD61A6NGH8 418 aa9.67□□□□□ -0.86
CUX1-217ENST00000558836 PLPP2O43688 288 aa9.67□□□□□ -0.86
CUX1-217ENST00000558836 FOSL2P15408 326 aa9.67□□□□□ -0.86
CUX1-217ENST00000558836 TCEA1P23193 301 aaKnown RBP9.67□□□□□ -0.86
CUX1-217ENST00000558836 AHCYP23526 432 aa9.67□□□□□ -0.86
CUX1-217ENST00000558836 OR2B6P58173 313 aa9.67□□□□□ -0.86
CUX1-217ENST00000558836 SCN1BQ07699 218 aa9.67□□□□□ -0.86
CUX1-217ENST00000558836 WDR45BQ5MNZ6 344 aa9.67□□□□□ -0.86
CUX1-217ENST00000558836 AKAP14Q86UN6 197 aa9.67□□□□□ -0.86
CUX1-217ENST00000558836 LSM14AQ8ND56 463 aaKnown RBP9.67□□□□□ -0.86
CUX1-217ENST00000558836 FAM71CQ8NEG0 241 aa9.67□□□□□ -0.86
CUX1-217ENST00000558836 HSD17B8Q92506 261 aa9.67□□□□□ -0.86
CUX1-217ENST00000558836 TMCO6Q96DC7 493 aa9.67□□□□□ -0.86
CUX1-217ENST00000558836 OMA1Q96E52 524 aa9.67□□□□□ -0.86
CUX1-217ENST00000558836 OR6C1Q96RD1 312 aa9.67□□□□□ -0.86
CUX1-217ENST00000558836 NPAS1Q99742 590 aa9.67□□□□□ -0.86
CUX1-217ENST00000558836 TBL1XR1Q9BZK7 514 aa9.67□□□□□ -0.86
CUX1-217ENST00000558836 WWTR1Q9GZV5 400 aa9.67□□□□□ -0.86
CUX1-217ENST00000558836 KCNN2Q9H2S1 579 aa9.67□□□□□ -0.86
CUX1-217ENST00000558836 PAIP2BQ9ULR5 123 aaKnown RBP9.67□□□□□ -0.86
CUX1-217ENST00000558836 BAIAP2Q9UQB8 552 aa9.67□□□□□ -0.86
CUX1-217ENST00000558836 MMACHCQ9Y4U1 282 aa9.67□□□□□ -0.86
CUX1-217ENST00000558836 A0A0G2JMP0 313 aa9.66□□□□□ -0.86
CUX1-217ENST00000558836 A0A0X1KG70 313 aa9.66□□□□□ -0.86
CUX1-217ENST00000558836 FRG2CA6NGY1 282 aa9.66□□□□□ -0.86
CUX1-217ENST00000558836 PLA2G10O15496 165 aa9.66□□□□□ -0.86
CUX1-217ENST00000558836 PPM1BO75688 479 aa9.66□□□□□ -0.86
CUX1-217ENST00000558836 SDHBP21912 280 aa9.66□□□□□ -0.86
CUX1-217ENST00000558836 ARRB1P49407 418 aaPredicted RBP9.66□□□□□ -0.86
CUX1-217ENST00000558836 RPL18Q07020 188 aaKnown RBP9.66□□□□□ -0.86
CUX1-217ENST00000558836 ODF4Q2M2E3 257 aa9.66□□□□□ -0.86
CUX1-217ENST00000558836 RNASE12Q5GAN4 147 aaKnown RBP9.66□□□□□ -0.86
CUX1-217ENST00000558836 KDM8Q8N371 416 aa9.66□□□□□ -0.86
CUX1-217ENST00000558836 SAMD12Q8N8I0 201 aa9.66□□□□□ -0.86
CUX1-217ENST00000558836 OR4M2Q8NGB6 313 aa9.66□□□□□ -0.86
CUX1-217ENST00000558836 STT3BQ8TCJ2 826 aa9.66□□□□□ -0.86
CUX1-217ENST00000558836 DUSP19Q8WTR2 217 aa9.66□□□□□ -0.86
CUX1-217ENST00000558836 THAP4Q8WY91 577 aa9.66□□□□□ -0.86
CUX1-217ENST00000558836 OR14A2Q96R54 314 aa9.66□□□□□ -0.86
CUX1-217ENST00000558836 PELOQ9BRX2 385 aaKnown RBP9.66□□□□□ -0.86
CUX1-217ENST00000558836 AKIRIN1Q9H9L7 192 aaPredicted RBP9.66□□□□□ -0.86
CUX1-217ENST00000558836 COPS7AQ9UBW8 275 aa9.66□□□□□ -0.86
CUX1-217ENST00000558836 POLHQ9Y253 713 aa9.66□□□□□ -0.86
CUX1-217ENST00000558836 TRBV2A0A0J9YWF9 115 aa9.66□□□□□ -0.86
CUX1-217ENST00000558836 A0A1B0GTH9 108 aa9.66□□□□□ -0.86
CUX1-217ENST00000558836 EVX1P49640 407 aa9.66□□□□□ -0.86
CUX1-217ENST00000558836 RPS4XP62701 263 aaKnown RBP9.66□□□□□ -0.86
CUX1-217ENST00000558836 ESPNLQ6ZVH7 1005 aa9.66□□□□□ -0.86
CUX1-217ENST00000558836 GPALPP1Q8IXQ4 340 aa9.66□□□□□ -0.86
CUX1-217ENST00000558836 OR1N1Q8NGS0 311 aa9.66□□□□□ -0.86
CUX1-217ENST00000558836 DAZLQ92904 295 aaKnown RBP9.66□□□□□ -0.86
CUX1-217ENST00000558836 DDOQ99489 341 aa9.66□□□□□ -0.86
CUX1-217ENST00000558836 CTRCQ99895 268 aa9.66□□□□□ -0.86
CUX1-217ENST00000558836 ALG12Q9BV10 488 aa9.66□□□□□ -0.86
CUX1-217ENST00000558836 OR11A1Q9GZK7 315 aa9.66□□□□□ -0.86
CUX1-217ENST00000558836 PCED1AQ9H1Q7 454 aa9.66□□□□□ -0.86
CUX1-217ENST00000558836 APMAPQ9HDC9 416 aa9.66□□□□□ -0.86
CUX1-217ENST00000558836 HAO2Q9NYQ3 351 aa9.66□□□□□ -0.86
CUX1-217ENST00000558836 EXTL2Q9UBQ6 330 aa9.66□□□□□ -0.86
CUX1-217ENST00000558836 ST6GALNAC2Q9UJ37 374 aa9.66□□□□□ -0.86
CUX1-217ENST00000558836 A0A1W2PQM1 296 aa9.66□□□□□ -0.86
CUX1-217ENST00000558836 TMEM72A0PK05 275 aa9.66□□□□□ -0.86
CUX1-217ENST00000558836 EIF4EP06730 217 aaKnown RBP9.66□□□□□ -0.86
CUX1-217ENST00000558836 GUSBP08236 651 aa9.66□□□□□ -0.86
CUX1-217ENST00000558836 F8A1P23610 371 aa9.66□□□□□ -0.86
CUX1-217ENST00000558836 NR4A2P43354 598 aa9.66□□□□□ -0.86
CUX1-217ENST00000558836 DIO1P49895 249 aa9.66□□□□□ -0.86
CUX1-217ENST00000558836 GDI2P50395 445 aaKnown RBP9.66□□□□□ -0.86
CUX1-217ENST00000558836 PPP3R1P63098 170 aa9.66□□□□□ -0.86
CUX1-217ENST00000558836 GPLD1P80108 840 aa9.66□□□□□ -0.86
CUX1-217ENST00000558836 DMKNQ6E0U4 476 aaPredicted RBP9.66□□□□□ -0.86
CUX1-217ENST00000558836 SLC29A4Q7RTT9 530 aa9.66□□□□□ -0.86
CUX1-217ENST00000558836 JAZF1Q86VZ6 243 aa9.66□□□□□ -0.86
CUX1-217ENST00000558836 OR4D9Q8NGE8 314 aa9.66□□□□□ -0.86
CUX1-217ENST00000558836 C8orf44Q96CB5 159 aa9.66□□□□□ -0.86
CUX1-217ENST00000558836 MVB12AQ96EY5 273 aa9.66□□□□□ -0.86
CUX1-217ENST00000558836 HOXD1Q9GZZ0 328 aa9.66□□□□□ -0.86
CUX1-217ENST00000558836 DUSP15Q9H1R2 295 aaPredicted RBP9.66□□□□□ -0.86
CUX1-217ENST00000558836 PPP1R3EQ9H7J1 279 aa9.66□□□□□ -0.86
CUX1-217ENST00000558836 NCDNQ9UBB6 729 aa9.66□□□□□ -0.86
CUX1-217ENST00000558836 KLHDC2Q9Y2U9 406 aa9.66□□□□□ -0.86
CUX1-217ENST00000558836 AK6Q9Y3D8 172 aaKnown RBP9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms