RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 C14orf105Q9NVL8 296 aa10.43□□□□□ -0.74
LDLR-208ENST00000558518 PIPOXQ9P0Z9 390 aa10.43□□□□□ -0.74
LDLR-208ENST00000558518 ERVK-19Q9WJR5 959 aa10.43□□□□□ -0.74
LDLR-208ENST00000558518 DUXAA6NLW8 204 aa10.42□□□□□ -0.74
LDLR-208ENST00000558518 IFITM5A6NNB3 132 aa10.42□□□□□ -0.74
LDLR-208ENST00000558518 EEF1E1-BLOC1S5C9J1V9 151 aa10.42□□□□□ -0.74
LDLR-208ENST00000558518 KRBOX1C9JBD0 128 aa10.42□□□□□ -0.74
LDLR-208ENST00000558518 MCIDASD6RGH6 385 aa10.42□□□□□ -0.74
LDLR-208ENST00000558518 BHLHE40O14503 412 aa10.42□□□□□ -0.74
LDLR-208ENST00000558518 FARS2O95363 451 aaKnown RBP10.42□□□□□ -0.74
LDLR-208ENST00000558518 MNDAP41218 407 aa10.42□□□□□ -0.74
LDLR-208ENST00000558518 RIN1Q13671 783 aa10.42□□□□□ -0.74
LDLR-208ENST00000558518 CDK5R1Q15078 307 aa10.42□□□□□ -0.74
LDLR-208ENST00000558518 DHCR24Q15392 516 aa10.42□□□□□ -0.74
LDLR-208ENST00000558518 OR7A5Q15622 319 aa10.42□□□□□ -0.74
LDLR-208ENST00000558518 PSRC1Q6PGN9 363 aaPredicted RBP10.42□□□□□ -0.74
LDLR-208ENST00000558518 GLDNQ6ZMI3 551 aaPredicted RBP10.42□□□□□ -0.74
LDLR-208ENST00000558518 OR4C16Q8NGL9 310 aa10.42□□□□□ -0.74
LDLR-208ENST00000558518 OR6N2Q8NGY6 317 aa10.42□□□□□ -0.74
LDLR-208ENST00000558518 SCARB1Q8WTV0 552 aa10.42□□□□□ -0.74
LDLR-208ENST00000558518 KISS1RQ969F8 398 aaPredicted RBP10.42□□□□□ -0.74
LDLR-208ENST00000558518 ZNF514Q96K75 400 aaPredicted RBP10.42□□□□□ -0.74
LDLR-208ENST00000558518 DEFB118Q96PH6 123 aa10.42□□□□□ -0.74
LDLR-208ENST00000558518 SDF2Q99470 211 aa10.42□□□□□ -0.74
LDLR-208ENST00000558518 C12orf57Q99622 126 aa10.42□□□□□ -0.74
LDLR-208ENST00000558518 ARHGDIGQ99819 225 aa10.42□□□□□ -0.74
LDLR-208ENST00000558518 LMAN2LQ9H0V9 348 aa10.42□□□□□ -0.74
LDLR-208ENST00000558518 TREM1Q9NP99 234 aa10.42□□□□□ -0.74
LDLR-208ENST00000558518 MEPEQ9NQ76 525 aaPredicted RBP10.42□□□□□ -0.74
LDLR-208ENST00000558518 OR2S2Q9NQN1 319 aa10.42□□□□□ -0.74
LDLR-208ENST00000558518 NPFFR2Q9Y5X5 522 aa10.42□□□□□ -0.74
LDLR-208ENST00000558518 ANAPC1Q9H1A4 1944 aa10.42□□□□□ -0.74
LDLR-208ENST00000558518 D6RAR5 112 aa10.42□□□□□ -0.74
LDLR-208ENST00000558518 F5H0A9 414 aaPredicted RBP10.42□□□□□ -0.74
LDLR-208ENST00000558518 OR10H2O60403 315 aa10.42□□□□□ -0.74
LDLR-208ENST00000558518 ZFPL1O95159 310 aa10.42□□□□□ -0.74
LDLR-208ENST00000558518 AQP2P41181 271 aa10.42□□□□□ -0.74
LDLR-208ENST00000558518 SKP1P63208 163 aa10.42□□□□□ -0.74
LDLR-208ENST00000558518 SP3Q02447 781 aa10.42□□□□□ -0.74
LDLR-208ENST00000558518 ZNF234Q14588 700 aa10.42□□□□□ -0.74
LDLR-208ENST00000558518 DCST2Q5T1A1 773 aa10.42□□□□□ -0.74
LDLR-208ENST00000558518 OR10K2Q6IF99 312 aa10.42□□□□□ -0.74
LDLR-208ENST00000558518 RGS7BPQ6MZT1 257 aaPredicted RBP10.42□□□□□ -0.74
LDLR-208ENST00000558518 LEG1Q6P5S2 330 aa10.42□□□□□ -0.74
LDLR-208ENST00000558518 TSSK4Q6SA08 328 aa10.42□□□□□ -0.74
LDLR-208ENST00000558518 PRSS41Q7RTY9 318 aa10.42□□□□□ -0.74
LDLR-208ENST00000558518 GLB1L2Q8IW92 636 aa10.42□□□□□ -0.74
LDLR-208ENST00000558518 OR2L5Q8NG80 312 aa10.42□□□□□ -0.74
LDLR-208ENST00000558518 OR4K14Q8NGD5 310 aa10.42□□□□□ -0.74
LDLR-208ENST00000558518 NPAS1Q99742 590 aa10.42□□□□□ -0.74
LDLR-208ENST00000558518 SARGQ9BW04 601 aa10.42□□□□□ -0.74
LDLR-208ENST00000558518 ATG5Q9H1Y0 275 aa10.42□□□□□ -0.74
LDLR-208ENST00000558518 COMMD9Q9P000 198 aa10.42□□□□□ -0.74
LDLR-208ENST00000558518 CA5BQ9Y2D0 317 aa10.42□□□□□ -0.74
LDLR-208ENST00000558518 A0A1W2PPV9 198 aa10.41□□□□□ -0.74
LDLR-208ENST00000558518 FGF18O76093 207 aa10.41□□□□□ -0.74
LDLR-208ENST00000558518 CD3DP04234 171 aa10.41□□□□□ -0.74
LDLR-208ENST00000558518 RD3LP0DJH9 198 aa10.41□□□□□ -0.74
LDLR-208ENST00000558518 IFNGR1P15260 489 aa10.41□□□□□ -0.74
LDLR-208ENST00000558518 PPP3CBP16298 524 aa10.41□□□□□ -0.74
LDLR-208ENST00000558518 NDUFS1P28331 727 aa10.41□□□□□ -0.74
LDLR-208ENST00000558518 RAB28P51157 221 aa10.41□□□□□ -0.74
LDLR-208ENST00000558518 DLX5P56178 289 aa10.41□□□□□ -0.74
LDLR-208ENST00000558518 TAS2R20P59543 309 aa10.41□□□□□ -0.74
LDLR-208ENST00000558518 CDK3Q00526 305 aa10.41□□□□□ -0.74
LDLR-208ENST00000558518 TNFRSF17Q02223 184 aa10.41□□□□□ -0.74
LDLR-208ENST00000558518 IRF5Q13568 498 aa10.41□□□□□ -0.74
LDLR-208ENST00000558518 FAM220AQ7Z4H9 259 aa10.41□□□□□ -0.74
LDLR-208ENST00000558518 NRROSQ86YC3 692 aa10.41□□□□□ -0.74
LDLR-208ENST00000558518 SLC39A11Q8N1S5 342 aa10.41□□□□□ -0.74
LDLR-208ENST00000558518 BVESQ8NE79 360 aa10.41□□□□□ -0.74
LDLR-208ENST00000558518 OR4N2Q8NGD1 307 aa10.41□□□□□ -0.74
LDLR-208ENST00000558518 ELF4Q99607 663 aaPredicted RBP10.41□□□□□ -0.74
LDLR-208ENST00000558518 RSPH9Q9H1X1 276 aaPredicted RBP10.41□□□□□ -0.74
LDLR-208ENST00000558518 PRDM7Q9NQW5 492 aa10.41□□□□□ -0.74
LDLR-208ENST00000558518 PTTG3PQ9NZH4 202 aa10.41□□□□□ -0.74
LDLR-208ENST00000558518 OR5V1Q9UGF6 321 aa10.41□□□□□ -0.74
LDLR-208ENST00000558518 SIGLEC7Q9Y286 467 aa10.41□□□□□ -0.74
LDLR-208ENST00000558518 KIF26AQ9ULI4 1882 aaPredicted RBP10.41□□□□□ -0.74
LDLR-208ENST00000558518 A0A1B0GWA3 101 aa10.41□□□□□ -0.74
LDLR-208ENST00000558518 PLSCR5A0PG75 271 aa10.41□□□□□ -0.74
LDLR-208ENST00000558518 OR2AT4A6NND4 320 aa10.41□□□□□ -0.74
LDLR-208ENST00000558518 ZNF806P0C7X5 589 aa10.41□□□□□ -0.74
LDLR-208ENST00000558518 ITGB8P26012 769 aa10.41□□□□□ -0.74
LDLR-208ENST00000558518 MLF2Q15773 248 aaPredicted RBP10.41□□□□□ -0.74
LDLR-208ENST00000558518 DMKNQ6E0U4 476 aaPredicted RBP10.41□□□□□ -0.74
LDLR-208ENST00000558518 SLC35D2Q76EJ3 337 aa10.41□□□□□ -0.74
LDLR-208ENST00000558518 RHOUQ7L0Q8 258 aa10.41□□□□□ -0.74
LDLR-208ENST00000558518 BPIFCQ8NFQ6 507 aa10.41□□□□□ -0.74
LDLR-208ENST00000558518 PAQR8Q8TEZ7 354 aa10.41□□□□□ -0.74
LDLR-208ENST00000558518 SLC25A38Q96DW6 304 aa10.41□□□□□ -0.74
LDLR-208ENST00000558518 SMIM19Q96E16 107 aa10.41□□□□□ -0.74
LDLR-208ENST00000558518 AHCYL2Q96HN2 611 aaKnown RBP10.41□□□□□ -0.74
LDLR-208ENST00000558518 SLC6A15Q9H2J7 730 aa10.41□□□□□ -0.74
LDLR-208ENST00000558518 PELI2Q9HAT8 420 aa10.41□□□□□ -0.74
LDLR-208ENST00000558518 TRPV4Q9HBA0 871 aa10.41□□□□□ -0.74
LDLR-208ENST00000558518 MED17Q9NVC6 651 aa10.41□□□□□ -0.74
LDLR-208ENST00000558518 C2orf42Q9NWW7 574 aa10.41□□□□□ -0.74
LDLR-208ENST00000558518 NCDNQ9UBB6 729 aa10.41□□□□□ -0.74
LDLR-208ENST00000558518 CYB5R1Q9UHQ9 305 aa10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms