RNA–Protein interactions for RNA: ENST00000558314.5

TPM1-211, Transcript of tropomyosin 1, humanhuman

TSL 1 (best)

Gene TPM1, Length 1,031 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-211ENST00000558314 FAM168AQ92567 244 aa13.59□□□□□ -0.23
TPM1-211ENST00000558314 C3orf49Q96BT1 292 aa13.59□□□□□ -0.23
TPM1-211ENST00000558314 REPIN1Q9BWE0 567 aaKnown RBP13.59□□□□□ -0.23
TPM1-211ENST00000558314 SF3B5Q9BWJ5 86 aaKnown RBP13.59□□□□□ -0.23
TPM1-211ENST00000558314 SPATA9Q9BWV2 254 aa13.59□□□□□ -0.23
TPM1-211ENST00000558314 CHD3Q12873 2000 aaKnown RBP13.59□□□□□ -0.23
TPM1-211ENST00000558314 ELOA3DA6NLF2 546 aaPredicted RBP13.58□□□□□ -0.24
TPM1-211ENST00000558314 NR5A2O00482 541 aa13.58□□□□□ -0.24
TPM1-211ENST00000558314 THBS1P07996 1170 aa13.58□□□□□ -0.24
TPM1-211ENST00000558314 ZCCHC18P0CG32 403 aa13.58□□□□□ -0.24
TPM1-211ENST00000558314 APOBEC3AP31941 199 aaPredicted RBP13.58□□□□□ -0.24
TPM1-211ENST00000558314 CLDN17P56750 224 aa13.58□□□□□ -0.24
TPM1-211ENST00000558314 DSCR9P59020 149 aa13.58□□□□□ -0.24
TPM1-211ENST00000558314 C1DQ13901 141 aaKnown RBP13.58□□□□□ -0.24
TPM1-211ENST00000558314 ELOA3BQ3SY89 546 aa13.58□□□□□ -0.24
TPM1-211ENST00000558314 TBRG1Q3YBR2 411 aa13.58□□□□□ -0.24
TPM1-211ENST00000558314 RNF220Q5VTB9 566 aa13.58□□□□□ -0.24
TPM1-211ENST00000558314 DNM1P46Q6ZS02 220 aa13.58□□□□□ -0.24
TPM1-211ENST00000558314 ELOA3Q8NG57 546 aa13.58□□□□□ -0.24
TPM1-211ENST00000558314 MAELQ96JY0 434 aaKnown RBP13.58□□□□□ -0.24
TPM1-211ENST00000558314 VRK1Q99986 396 aaPredicted RBP13.58□□□□□ -0.24
TPM1-211ENST00000558314 AMBRA1Q9C0C7 1298 aa13.58□□□□□ -0.24
TPM1-211ENST00000558314 SDR39U1Q9NRG7 319 aaPredicted RBP13.58□□□□□ -0.24
TPM1-211ENST00000558314 IFT52Q9Y366 437 aa13.58□□□□□ -0.24
TPM1-211ENST00000558314 PCDHB14Q9Y5E9 798 aa13.58□□□□□ -0.24
TPM1-211ENST00000558314 DSPPQ9NZW4 1301 aa13.58□□□□□ -0.24
TPM1-211ENST00000558314 PLCE1Q9P212 2302 aa13.57□□□□□ -0.24
TPM1-211ENST00000558314 HEATR1Q9H583 2144 aaKnown RBP13.57□□□□□ -0.24
TPM1-211ENST00000558314 RNF212BA8MTL3 300 aa13.57□□□□□ -0.24
TPM1-211ENST00000558314 CLIC1O00299 241 aa13.57□□□□□ -0.24
TPM1-211ENST00000558314 UPK3AO75631 287 aa13.57□□□□□ -0.24
TPM1-211ENST00000558314 IFNA2P01563 188 aa13.57□□□□□ -0.24
TPM1-211ENST00000558314 PNMTP11086 282 aa13.57□□□□□ -0.24
TPM1-211ENST00000558314 RGNQ15493 299 aa13.57□□□□□ -0.24
TPM1-211ENST00000558314 TMEM249Q2WGJ8 235 aa13.57□□□□□ -0.24
TPM1-211ENST00000558314 CHRFAM7AQ494W8 412 aa13.57□□□□□ -0.24
TPM1-211ENST00000558314 CREB3L2Q70SY1 520 aa13.57□□□□□ -0.24
TPM1-211ENST00000558314 OR1K1Q8NGR3 316 aa13.57□□□□□ -0.24
TPM1-211ENST00000558314 NFKBIDQ8NI38 313 aa13.57□□□□□ -0.24
TPM1-211ENST00000558314 KTI12Q96EK9 354 aaPredicted RBP13.57□□□□□ -0.24
TPM1-211ENST00000558314 SLC38A2Q96QD8 506 aa13.57□□□□□ -0.24
TPM1-211ENST00000558314 TNFRSF13CQ96RJ3 184 aa13.57□□□□□ -0.24
TPM1-211ENST00000558314 KCNK17Q96T54 332 aa13.57□□□□□ -0.24
TPM1-211ENST00000558314 RAD21L1Q9H4I0 556 aa13.57□□□□□ -0.24
TPM1-211ENST00000558314 THUMPD1Q9NXG2 353 aaKnown RBP13.57□□□□□ -0.24
TPM1-211ENST00000558314 SEC14L4Q9UDX3 406 aa13.57□□□□□ -0.24
TPM1-211ENST00000558314 RASD1Q9Y272 281 aa13.57□□□□□ -0.24
TPM1-211ENST00000558314 USH1CQ9Y6N9 552 aa13.57□□□□□ -0.24
TPM1-211ENST00000558314 IGHV1-18A0A0C4DH31 117 aa13.56□□□□□ -0.24
TPM1-211ENST00000558314 H7C417 338 aa13.56□□□□□ -0.24
TPM1-211ENST00000558314 ZNF500O60304 480 aaPredicted RBP13.56□□□□□ -0.24
TPM1-211ENST00000558314 ERLIN1O75477 346 aa13.56□□□□□ -0.24
TPM1-211ENST00000558314 VAMP5O95183 116 aa13.56□□□□□ -0.24
TPM1-211ENST00000558314 SLC25A16P16260 332 aa13.56□□□□□ -0.24
TPM1-211ENST00000558314 ZNF43P17038 809 aa13.56□□□□□ -0.24
TPM1-211ENST00000558314 CAPZA2P47755 286 aa13.56□□□□□ -0.24
TPM1-211ENST00000558314 EFNA4P52798 201 aa13.56□□□□□ -0.24
TPM1-211ENST00000558314 ROR2Q01974 943 aaKnown RBP13.56□□□□□ -0.24
TPM1-211ENST00000558314 GGTLC2Q14390 218 aa13.56□□□□□ -0.24
TPM1-211ENST00000558314 ZSWIM7Q19AV6 140 aa13.56□□□□□ -0.24
TPM1-211ENST00000558314 MSANTD1Q6ZTZ1 278 aa13.56□□□□□ -0.24
TPM1-211ENST00000558314 LINGO2Q7L985 606 aa13.56□□□□□ -0.24
TPM1-211ENST00000558314 SLC46A3Q7Z3Q1 461 aa13.56□□□□□ -0.24
TPM1-211ENST00000558314 EPHX4Q8IUS5 362 aa13.56□□□□□ -0.24
TPM1-211ENST00000558314 GOLGA6L1Q8N7Z2 621 aa13.56□□□□□ -0.24
TPM1-211ENST00000558314 ANKS4BQ8N8V4 417 aa13.56□□□□□ -0.24
TPM1-211ENST00000558314 OR10H5Q8NGA6 315 aa13.56□□□□□ -0.24
TPM1-211ENST00000558314 BBS10Q8TAM1 723 aa13.56□□□□□ -0.24
TPM1-211ENST00000558314 STK35Q8TDR2 534 aa13.56□□□□□ -0.24
TPM1-211ENST00000558314 NANOS1Q8WY41 292 aaKnown RBP13.56□□□□□ -0.24
TPM1-211ENST00000558314 GTF2H4Q92759 462 aa13.56□□□□□ -0.24
TPM1-211ENST00000558314 PRR14Q9BWN1 585 aa13.56□□□□□ -0.24
TPM1-211ENST00000558314 PAIP1Q9H074 479 aaKnown RBP13.56□□□□□ -0.24
TPM1-211ENST00000558314 TMBIM4Q9HC24 238 aa13.56□□□□□ -0.24
TPM1-211ENST00000558314 CHST2Q9Y4C5 530 aa13.56□□□□□ -0.24
TPM1-211ENST00000558314 RTTNQ86VV8 2226 aa13.55□□□□□ -0.24
TPM1-211ENST00000558314 A0A096LPI6 279 aa13.55□□□□□ -0.24
TPM1-211ENST00000558314 TMEM229AB2RXF0 380 aa13.55□□□□□ -0.24
TPM1-211ENST00000558314 POLR3GO15318 223 aaPredicted RBP13.55□□□□□ -0.24
TPM1-211ENST00000558314 SEC14L2O76054 403 aa13.55□□□□□ -0.24
TPM1-211ENST00000558314 CRYAAP02489 173 aa13.55□□□□□ -0.24
TPM1-211ENST00000558314 ZNF16P17020 682 aaPredicted RBP13.55□□□□□ -0.24
TPM1-211ENST00000558314 P2RY4P51582 365 aa13.55□□□□□ -0.24
TPM1-211ENST00000558314 SNRPD2P62316 118 aaKnown RBP13.55□□□□□ -0.24
TPM1-211ENST00000558314 C6orf52Q5T4I8 152 aa13.55□□□□□ -0.24
TPM1-211ENST00000558314 GCNT6Q5T4J0 391 aa13.55□□□□□ -0.24
TPM1-211ENST00000558314 CARD17Q5XLA6 110 aa13.55□□□□□ -0.24
TPM1-211ENST00000558314 PODNL1Q6PEZ8 512 aa13.55□□□□□ -0.24
TPM1-211ENST00000558314 HIPK1Q86Z02 1210 aa13.55□□□□□ -0.24
TPM1-211ENST00000558314 GPR137CQ8N3F9 429 aa13.55□□□□□ -0.24
TPM1-211ENST00000558314 MFSD8Q8NHS3 518 aa13.55□□□□□ -0.24
TPM1-211ENST00000558314 SEC61A2Q9H9S3 476 aa13.55□□□□□ -0.24
TPM1-211ENST00000558314 A4GALTQ9NPC4 353 aa13.55□□□□□ -0.24
TPM1-211ENST00000558314 SELENONQ9NZV5 590 aa13.55□□□□□ -0.24
TPM1-211ENST00000558314 FKBP7Q9Y680 259 aa13.55□□□□□ -0.24
TPM1-211ENST00000558314 M0R082 166 aa13.54□□□□□ -0.24
TPM1-211ENST00000558314 SLC43A1O75387 559 aa13.54□□□□□ -0.24
TPM1-211ENST00000558314 NQO1P15559 274 aaKnown RBP13.54□□□□□ -0.24
TPM1-211ENST00000558314 USF1P22415 310 aaPredicted RBP13.54□□□□□ -0.24
TPM1-211ENST00000558314 AQP1P29972 269 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms